Wall clock time and date at job start Mon Mar 30 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48490 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47221 * 300.00679 * 3 2 1 6 6 H 1.48508 * 109.46631 * 59.99916 * 3 2 1 7 7 C 1.39933 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00083 * 164.87147 * 7 2 1 9 9 C 1.41411 * 119.99625 * 344.59239 * 7 2 1 10 10 C 1.40783 * 120.20766 * 335.25393 * 9 7 2 11 11 C 1.37644 * 119.87826 * 179.69887 * 10 9 7 12 12 C 1.38525 * 120.32503 * 0.57749 * 11 10 9 13 13 C 1.39250 * 120.42838 * 359.72058 * 12 11 10 14 14 N 1.39938 * 119.94759 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00092 * 215.63504 * 14 13 12 16 16 O 1.21293 * 119.99856 * 355.50602 * 15 14 13 17 17 C 1.50704 * 120.00259 * 175.50360 * 15 14 13 18 18 H 1.09000 * 112.84307 * 48.80072 * 17 15 14 19 19 C 1.53778 * 113.61530 * 179.97438 * 17 15 14 20 20 C 1.53784 * 87.07844 * 139.98181 * 19 17 15 21 21 H 1.09002 * 113.60887 * 220.01635 * 20 19 17 22 22 N 1.46901 * 113.61199 * 89.11866 * 20 19 17 23 23 C 1.53778 * 87.08192 * 334.56703 * 20 19 17 24 24 C 1.38276 * 120.10585 * 359.97438 * 13 12 11 25 25 H 0.97004 * 120.00241 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.06062 * 359.97323 * 10 9 7 27 27 H 1.07999 * 119.83427 * 180.29645 * 11 10 9 28 28 H 1.08003 * 119.78457 * 179.73848 * 12 11 10 29 29 H 0.97004 * 119.99933 * 35.63028 * 14 13 12 30 30 H 1.08996 * 113.61336 * 254.53018 * 19 17 15 31 31 H 1.09003 * 113.61435 * 25.43279 * 19 17 15 32 32 H 1.00903 * 110.99771 * 179.97438 * 22 20 19 33 33 H 1.00902 * 110.99777 * 303.94859 * 22 20 19 34 34 H 1.08997 * 113.61259 * 270.88248 * 23 20 19 35 35 H 1.09002 * 113.61593 * 139.98059 * 23 20 19 36 36 H 1.07994 * 120.16358 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0599 -1.2279 -0.2446 9 6 1.3390 -2.4146 0.3243 10 6 0.1814 -2.3873 1.1250 11 6 -0.4679 -3.5615 1.4319 12 6 0.0187 -4.7721 0.9666 13 6 1.1661 -4.8150 0.1788 14 7 1.6492 -6.0436 -0.2854 15 6 2.9771 -6.2504 -0.3877 16 8 3.7513 -5.3461 -0.1555 17 6 3.4999 -7.6053 -0.7903 18 1 3.0028 -8.0052 -1.6741 19 6 5.0344 -7.6772 -0.8615 20 6 4.9198 -9.0736 -0.2276 21 1 5.6881 -9.2790 0.5178 22 7 4.7727 -10.1556 -1.2103 23 6 3.5857 -8.6040 0.3759 24 6 1.8289 -3.6456 -0.1455 25 1 -0.4851 0.8401 0.0004 26 1 -0.1990 -1.4463 1.4942 27 1 -1.3586 -3.5392 2.0423 28 1 -0.4953 -5.6886 1.2162 29 1 1.0284 -6.7464 -0.5336 30 1 5.4240 -7.6904 -1.8794 31 1 5.5357 -6.9483 -0.2247 32 1 4.7015 -11.0522 -0.7529 33 1 3.9793 -9.9923 -1.8119 34 1 3.6910 -8.1285 1.3511 35 1 2.8058 -9.3653 0.3571 36 1 2.7191 -3.6779 -0.7561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693562410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:13 Heat of formation + Delta-G solvation = 1.044376 kcal Electronic energy + Delta-G solvation = -18736.303041 eV Core-core repulsion = 15799.297747 eV Total energy + Delta-G solvation = -2937.005294 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.39506 -38.45793 -36.86608 -34.41676 -33.00398 -31.73857 -29.80188 -28.38854 -25.77512 -25.47749 -25.19336 -21.68157 -20.84428 -19.90836 -18.95329 -17.78563 -17.29820 -15.76775 -15.61822 -15.40227 -15.00980 -14.64242 -14.55537 -14.04535 -13.48458 -12.99652 -12.88598 -12.83346 -12.40811 -12.16110 -11.64077 -11.46538 -11.17535 -11.10582 -10.90894 -10.73690 -10.56182 -10.42669 -10.12747 -9.64879 -9.34631 -9.05318 -9.00585 -8.81022 -7.43564 -6.91896 -6.68375 -4.32358 2.61715 2.84823 3.10899 3.17957 3.20034 3.34335 3.67812 3.98273 4.19282 4.34321 4.51373 4.65681 4.70214 4.83764 5.23788 5.43458 5.60998 5.68053 5.75022 5.81735 5.97360 6.18483 6.26284 6.40763 6.79687 6.86929 7.05318 7.07825 7.11073 7.14109 7.28511 7.59111 7.75892 7.99637 8.12974 8.21088 8.28981 8.66049 8.77151 8.96704 9.00784 10.23599 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.032345 B = 0.004466 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.469954 B = 6268.438723 C = 6970.238958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.172 4.172 11 C -0.094 4.094 12 C -0.262 4.262 13 C 0.146 3.854 14 N -0.667 5.667 15 C 0.512 3.488 16 O -0.516 6.516 17 C -0.137 4.137 18 H 0.107 0.893 19 C -0.110 4.110 20 C 0.069 3.931 21 H 0.093 0.907 22 N -0.829 5.829 23 C -0.158 4.158 24 C -0.210 4.210 25 H 0.279 0.721 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.397 0.603 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.343 0.657 33 H 0.341 0.659 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 -14.437 -0.728 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.192 4.192 11 C -0.113 4.113 12 C -0.284 4.284 13 C 0.055 3.945 14 N -0.310 5.310 15 C 0.298 3.702 16 O -0.391 6.391 17 C -0.159 4.159 18 H 0.125 0.875 19 C -0.148 4.148 20 C -0.043 4.043 21 H 0.111 0.889 22 N -0.358 5.358 23 C -0.198 4.198 24 C -0.231 4.231 25 H 0.090 0.910 26 H 0.139 0.861 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.230 0.770 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.328 -13.428 -0.848 14.134 hybrid contribution -1.226 0.239 0.280 1.280 sum 3.102 -13.189 -0.568 13.561 Atomic orbital electron populations 1.69827 1.07517 1.28930 1.36012 1.25911 0.94764 1.01301 0.92278 0.86250 0.81077 0.80876 0.78473 1.18355 1.20013 1.19730 1.19639 0.97285 0.90782 1.40894 0.90332 1.17537 0.91094 0.91714 0.88254 1.21411 0.99033 0.96911 1.01837 1.20465 0.98408 0.92766 0.99643 1.20049 1.01591 0.96863 1.09863 1.17485 0.95838 0.83623 0.97569 1.43469 1.06811 1.15620 1.65099 1.20419 0.82322 0.89634 0.77784 1.90733 1.56244 1.43952 1.48191 1.22767 0.99178 0.93828 1.00126 0.87520 1.22958 0.93280 0.95801 1.02796 1.22488 0.96292 0.91893 0.93668 0.88870 1.58665 1.49663 1.04479 1.22965 1.23701 0.99446 0.98258 0.98437 1.21116 1.03875 0.90892 1.07252 0.91037 0.86077 0.89110 0.89443 0.76979 0.90366 0.88021 0.84391 0.84542 0.89092 0.91119 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.00 10.83 55.55 0.60 -20.39 16 2 C 0.07 1.93 5.19 -17.35 -0.09 1.84 16 3 Si 0.91 19.33 29.59 -169.99 -5.03 14.30 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.46 -12.74 9.06 -37.74 -0.34 -13.08 16 8 H 0.08 2.17 7.89 -52.49 -0.41 1.75 16 9 C 0.12 3.28 5.58 -106.85 -0.60 2.68 16 10 C -0.17 -4.60 8.69 -38.84 -0.34 -4.93 16 11 C -0.09 -2.23 10.02 -39.69 -0.40 -2.62 16 12 C -0.26 -5.87 9.97 -39.10 -0.39 -6.26 16 13 C 0.15 3.38 6.28 -83.77 -0.53 2.85 16 14 N -0.67 -11.99 5.33 -9.91 -0.05 -12.04 16 15 C 0.51 9.07 7.19 -10.98 -0.08 8.99 16 16 O -0.52 -11.57 13.37 5.55 0.07 -11.50 16 17 C -0.14 -1.66 3.81 -90.96 -0.35 -2.00 16 18 H 0.11 1.04 7.72 -51.93 -0.40 0.64 16 19 C -0.11 -1.31 7.20 -25.92 -0.19 -1.50 16 20 C 0.07 0.64 5.18 -66.90 -0.35 0.30 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 22 N -0.83 -6.51 9.64 -3.97 -0.04 -6.55 16 23 C -0.16 -1.58 7.34 -25.92 -0.19 -1.77 16 24 C -0.21 -5.56 8.43 -38.69 -0.33 -5.89 16 25 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 26 H 0.12 3.31 6.08 -52.49 -0.32 2.99 16 27 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 29 H 0.40 5.55 8.82 -40.82 -0.36 5.19 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.41 7.43 -51.93 -0.39 1.02 16 32 H 0.34 2.06 9.08 -39.29 -0.36 1.71 16 33 H 0.34 2.39 8.15 -39.29 -0.32 2.07 16 34 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.11 3.03 6.26 -52.49 -0.33 2.70 16 LS Contribution 302.37 15.07 4.56 4.56 Total: -1.00 -31.30 302.37 -8.60 -39.90 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -4.55 Total: 13.12 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -4.15 Total: -21.39 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.51 Total: -38.98 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.30 -8.60 -39.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693562410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.943 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds