Wall clock time and date at job start Mon Mar 30 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00183 * 2 1 4 4 H 1.48490 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47221 * 300.00679 * 3 2 1 6 6 H 1.48508 * 109.46631 * 59.99916 * 3 2 1 7 7 C 1.39933 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00083 * 164.87147 * 7 2 1 9 9 C 1.41411 * 119.99625 * 344.59239 * 7 2 1 10 10 C 1.40783 * 120.20766 * 335.25393 * 9 7 2 11 11 C 1.37644 * 119.87826 * 179.69887 * 10 9 7 12 12 C 1.38525 * 120.32503 * 0.57749 * 11 10 9 13 13 C 1.39250 * 120.42838 * 359.72058 * 12 11 10 14 14 N 1.39938 * 119.94759 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00092 * 215.63504 * 14 13 12 16 16 O 1.21293 * 119.99856 * 355.50602 * 15 14 13 17 17 C 1.50704 * 120.00259 * 175.50360 * 15 14 13 18 18 H 1.09000 * 112.84307 * 48.80072 * 17 15 14 19 19 C 1.53778 * 113.61530 * 179.97438 * 17 15 14 20 20 C 1.53784 * 87.07844 * 139.98181 * 19 17 15 21 21 H 1.09002 * 113.60887 * 220.01635 * 20 19 17 22 22 N 1.46901 * 113.61199 * 89.11866 * 20 19 17 23 23 C 1.53778 * 87.08192 * 334.56703 * 20 19 17 24 24 C 1.38276 * 120.10585 * 359.97438 * 13 12 11 25 25 H 0.97004 * 120.00241 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.06062 * 359.97323 * 10 9 7 27 27 H 1.07999 * 119.83427 * 180.29645 * 11 10 9 28 28 H 1.08003 * 119.78457 * 179.73848 * 12 11 10 29 29 H 0.97004 * 119.99933 * 35.63028 * 14 13 12 30 30 H 1.08996 * 113.61336 * 254.53018 * 19 17 15 31 31 H 1.09003 * 113.61435 * 25.43279 * 19 17 15 32 32 H 1.00903 * 110.99771 * 179.97438 * 22 20 19 33 33 H 1.00902 * 110.99777 * 303.94859 * 22 20 19 34 34 H 1.08997 * 113.61259 * 270.88248 * 23 20 19 35 35 H 1.09002 * 113.61593 * 139.98059 * 23 20 19 36 36 H 1.07994 * 120.16358 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2118 -0.0005 8 1 3.0599 -1.2279 -0.2446 9 6 1.3390 -2.4146 0.3243 10 6 0.1814 -2.3873 1.1250 11 6 -0.4679 -3.5615 1.4319 12 6 0.0187 -4.7721 0.9666 13 6 1.1661 -4.8150 0.1788 14 7 1.6492 -6.0436 -0.2854 15 6 2.9771 -6.2504 -0.3877 16 8 3.7513 -5.3461 -0.1555 17 6 3.4999 -7.6053 -0.7903 18 1 3.0028 -8.0052 -1.6741 19 6 5.0344 -7.6772 -0.8615 20 6 4.9198 -9.0736 -0.2276 21 1 5.6881 -9.2790 0.5178 22 7 4.7727 -10.1556 -1.2103 23 6 3.5857 -8.6040 0.3759 24 6 1.8289 -3.6456 -0.1455 25 1 -0.4851 0.8401 0.0004 26 1 -0.1990 -1.4463 1.4942 27 1 -1.3586 -3.5392 2.0423 28 1 -0.4953 -5.6886 1.2162 29 1 1.0284 -6.7464 -0.5336 30 1 5.4240 -7.6904 -1.8794 31 1 5.5357 -6.9483 -0.2247 32 1 4.7015 -11.0522 -0.7529 33 1 3.9793 -9.9923 -1.8119 34 1 3.6910 -8.1285 1.3511 35 1 2.8058 -9.3653 0.3571 36 1 2.7191 -3.6779 -0.7561 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693562410.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:12 Heat of formation + Delta-G solvation = -21.124853 kcal Electronic energy + Delta-G solvation = -18737.264371 eV Core-core repulsion = 15799.297747 eV Total energy + Delta-G solvation = -2937.966624 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.67909 -39.83175 -38.52131 -36.20737 -34.83104 -32.53694 -31.77165 -30.12148 -27.31111 -26.66875 -26.49854 -23.28807 -22.70846 -21.44678 -20.01078 -19.45594 -18.65195 -17.44120 -17.03286 -16.52903 -16.50469 -16.36863 -15.86444 -15.32069 -14.95166 -14.67690 -14.25294 -14.05178 -13.77612 -13.55251 -13.36623 -12.99779 -12.91254 -12.81434 -12.51281 -12.19441 -12.01692 -11.57452 -11.56604 -11.41028 -11.16020 -10.85010 -10.52432 -9.62273 -9.42180 -8.79323 -8.61693 -6.40010 0.85227 0.98110 1.34621 1.45120 1.50268 1.76067 2.19257 2.26874 2.71193 3.40450 3.47328 3.63322 3.68424 3.79229 3.98600 4.21004 4.45822 4.60795 4.61453 4.78120 4.85880 4.95521 5.02984 5.06614 5.10264 5.11743 5.23973 5.29168 5.32712 5.74904 5.85534 6.05774 6.10589 6.25148 6.32687 6.63965 6.65801 6.67904 6.91785 6.99015 7.34284 8.31479 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.032345 B = 0.004466 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.469954 B = 6268.438723 C = 6970.238958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.261 1.261 6 H -0.258 1.258 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.087 3.913 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.250 4.250 13 C 0.153 3.847 14 N -0.656 5.656 15 C 0.506 3.494 16 O -0.571 6.571 17 C -0.128 4.128 18 H 0.141 0.859 19 C -0.121 4.121 20 C 0.088 3.912 21 H 0.099 0.901 22 N -0.830 5.830 23 C -0.147 4.147 24 C -0.240 4.240 25 H 0.290 0.710 26 H 0.107 0.893 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.420 0.580 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.357 0.643 33 H 0.349 0.651 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -16.782 -0.657 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.185 1.185 6 H -0.182 1.182 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.084 3.916 10 C -0.218 4.218 11 C -0.111 4.111 12 C -0.271 4.271 13 C 0.059 3.941 14 N -0.301 5.301 15 C 0.295 3.705 16 O -0.449 6.449 17 C -0.149 4.149 18 H 0.159 0.841 19 C -0.160 4.160 20 C -0.025 4.025 21 H 0.117 0.883 22 N -0.361 5.361 23 C -0.188 4.188 24 C -0.262 4.262 25 H 0.100 0.900 26 H 0.125 0.875 27 H 0.141 0.859 28 H 0.150 0.850 29 H 0.258 0.742 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.312 -15.846 -0.790 16.208 hybrid contribution -0.939 0.816 0.243 1.267 sum 2.374 -15.030 -0.547 15.226 Atomic orbital electron populations 1.69851 1.08684 1.30477 1.35862 1.26708 0.95647 1.04239 0.91155 0.85160 0.78989 0.76133 0.79393 1.19047 1.18513 1.18175 1.19785 0.96910 0.92623 1.43897 0.92085 1.17874 0.92172 0.92420 0.89152 1.21374 0.99614 0.97732 1.03128 1.20855 0.98899 0.92222 0.99145 1.20492 1.00738 0.98086 1.07828 1.17594 0.95374 0.84562 0.96536 1.43415 1.07666 1.14419 1.64637 1.21538 0.81605 0.91204 0.76123 1.90724 1.57482 1.46351 1.50309 1.22913 0.98929 0.90638 1.02385 0.84140 1.22973 0.93087 0.97334 1.02575 1.22281 0.96053 0.90748 0.93449 0.88295 1.58601 1.50245 1.04629 1.22657 1.23678 1.00786 0.97760 0.96531 1.21079 1.04096 0.92329 1.08668 0.89973 0.87498 0.85860 0.84997 0.74177 0.90322 0.90831 0.82770 0.83670 0.90818 0.88084 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.48 10.83 21.82 0.24 -44.25 16 2 C 0.04 1.99 5.19 85.25 0.44 2.43 16 3 Si 0.98 40.73 29.59 68.60 2.03 42.76 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.50 -29.87 9.06 23.46 0.21 -29.65 16 8 H 0.06 3.67 7.89 -2.91 -0.02 3.64 16 9 C 0.09 5.10 5.58 -21.31 -0.12 4.99 16 10 C -0.20 -10.89 8.69 22.75 0.20 -10.70 16 11 C -0.09 -4.28 10.02 22.20 0.22 -4.06 16 12 C -0.25 -10.62 9.97 22.58 0.23 -10.40 16 13 C 0.15 6.99 6.28 38.10 0.24 7.23 16 14 N -0.66 -22.61 5.33 -303.64 -1.62 -24.23 16 15 C 0.51 17.79 7.19 87.66 0.63 18.42 16 16 O -0.57 -26.78 13.37 -3.07 -0.04 -26.83 16 17 C -0.13 -2.81 3.81 -11.01 -0.04 -2.85 16 18 H 0.14 2.20 7.72 -2.39 -0.02 2.18 16 19 C -0.12 -2.80 7.20 31.12 0.22 -2.58 16 20 C 0.09 1.41 5.18 45.44 0.24 1.64 16 21 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 22 N -0.83 -10.09 9.64 -166.49 -1.60 -11.69 16 23 C -0.15 -2.50 7.34 31.12 0.23 -2.27 16 24 C -0.24 -13.34 8.43 22.85 0.19 -13.15 16 25 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 26 H 0.11 6.06 6.08 -2.91 -0.02 6.05 16 27 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 28 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 29 H 0.42 10.35 8.82 -92.71 -0.82 9.53 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 2.13 7.43 -2.39 -0.02 2.11 16 32 H 0.36 2.88 9.08 -89.69 -0.81 2.07 16 33 H 0.35 3.45 8.15 -89.69 -0.73 2.72 16 34 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 5.12 6.26 -2.91 -0.02 5.10 16 Total: -1.00 -73.31 302.37 0.66 -72.65 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -1.23 Total: 32.53 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 2.89 Total: -40.94 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.99 Total: -80.17 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.04 Total: -26.83 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -73.31 0.66 -72.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693562410.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.523 kcal (2) G-P(sol) polarization free energy of solvation -73.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds