Wall clock time and date at job start Mon Mar 30 2020 05:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 119.99777 * 2 1 4 4 H 1.48507 * 109.46890 * 269.99909 * 3 2 1 5 5 H 1.48497 * 109.47505 * 29.99659 * 3 2 1 6 6 H 1.48499 * 109.47519 * 150.00022 * 3 2 1 7 7 C 1.39945 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00429 * 197.84300 * 7 2 1 9 9 C 1.41398 * 119.99615 * 17.84843 * 7 2 1 10 10 C 1.40713 * 120.24258 * 204.38194 * 9 7 2 11 11 C 1.37621 * 119.74757 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24364 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.74557 * 180.02562 * 12 11 10 14 14 N 1.46894 * 109.47155 * 90.00433 * 13 12 11 15 15 C 1.46896 * 111.00142 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.43627 * 36.08505 * 15 14 13 17 17 C 1.54633 * 110.48716 * 158.76710 * 15 14 13 18 18 C 1.54484 * 101.76205 * 143.47505 * 17 15 14 19 19 N 1.46760 * 105.47675 * 334.58628 * 18 17 15 20 20 C 1.34427 * 111.29847 * 17.01526 * 19 18 17 21 21 O 1.21281 * 124.93937 * 179.55934 * 20 19 18 22 22 C 1.38637 * 120.50227 * 0.30126 * 12 11 10 23 23 C 1.37614 * 120.24867 * 359.43929 * 22 12 11 24 24 H 0.97000 * 120.00132 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.13122 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.87667 * 180.02562 * 11 10 9 27 27 H 1.08999 * 109.46716 * 210.00126 * 13 12 11 28 28 H 1.08998 * 109.46942 * 329.99776 * 13 12 11 29 29 H 1.00903 * 111.00021 * 303.94860 * 14 13 12 30 30 H 1.08996 * 110.97295 * 261.59303 * 17 15 14 31 31 H 1.08999 * 110.96889 * 25.35942 * 17 15 14 32 32 H 1.08992 * 110.24675 * 215.58326 * 18 17 15 33 33 H 1.09006 * 110.31546 * 93.62265 * 18 17 15 34 34 H 0.96995 * 124.35312 * 197.03810 * 19 18 17 35 35 H 1.07998 * 119.87417 * 179.69778 * 22 12 11 36 36 H 1.07999 * 120.13141 * 180.27117 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4396 2.6527 0.6999 6 1 3.5398 1.4404 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2343 0.2871 9 6 1.3521 -2.4072 -0.3743 10 6 1.8260 -3.6498 0.0855 11 6 1.1801 -4.8068 -0.2860 12 6 0.0662 -4.7511 -1.1096 13 6 -0.6328 -6.0250 -1.5091 14 7 -1.6780 -6.3390 -0.5259 15 6 -2.3828 -7.5772 -0.8839 16 1 -1.6911 -8.2948 -1.3253 17 6 -3.0765 -8.1835 0.3580 18 6 -4.3788 -8.7472 -0.2526 19 7 -4.6255 -7.9458 -1.4571 20 6 -3.5198 -7.2825 -1.8372 21 8 -3.4446 -6.5543 -2.8041 22 6 -0.4060 -3.5328 -1.5732 23 6 0.2210 -2.3628 -1.2101 24 1 -0.4850 0.8400 0.0004 25 1 2.6933 -3.6954 0.7275 26 1 1.5417 -5.7616 0.0659 27 1 -1.0854 -5.8981 -2.4925 28 1 0.0898 -6.8403 -1.5442 29 1 -1.2930 -6.3980 0.4049 30 1 -2.4726 -8.9802 0.7922 31 1 -3.2942 -7.4134 1.0981 32 1 -5.2042 -8.6355 0.4503 33 1 -4.2492 -9.7966 -0.5177 34 1 -5.4770 -7.9004 -1.9194 35 1 -1.2716 -3.5016 -2.2182 36 1 -0.1511 -1.4145 -1.5688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693958815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:29 Heat of formation + Delta-G solvation = -18.532855 kcal Electronic energy + Delta-G solvation = -18565.320286 eV Core-core repulsion = 15627.466059 eV Total energy + Delta-G solvation = -2937.854227 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26587 -37.64345 -36.33225 -35.17306 -33.48444 -30.89444 -29.40446 -29.10510 -27.12627 -25.39314 -23.01150 -22.11741 -20.88009 -19.96557 -19.75873 -17.37326 -17.23032 -16.71843 -15.32524 -15.12919 -14.95663 -14.18390 -14.02335 -13.80497 -13.63256 -13.41836 -13.16264 -12.58532 -12.45917 -12.04412 -11.87643 -11.74673 -11.42462 -11.19831 -11.00316 -10.84515 -10.40698 -10.35428 -9.83994 -9.50967 -9.28952 -9.16895 -9.07281 -8.08073 -7.36428 -7.24871 -6.70030 -4.29498 2.66844 2.83200 3.10463 3.13891 3.15168 3.22953 3.31695 3.97273 4.28386 4.34707 4.45082 4.71101 4.88905 5.10271 5.25915 5.29742 5.58211 5.76251 5.80271 5.92141 6.01890 6.33141 6.45255 6.59578 6.76365 6.97824 7.04367 7.12924 7.31387 7.38359 7.42738 7.67197 7.71307 7.94881 8.12436 8.24195 8.35358 8.36861 8.71831 8.95631 9.04873 10.24185 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.038876 B = 0.003917 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.059981 B = 7145.827741 C = 7396.850220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.229 4.229 11 C -0.086 4.086 12 C -0.212 4.212 13 C 0.122 3.878 14 N -0.663 5.663 15 C 0.051 3.949 16 H 0.076 0.924 17 C -0.137 4.137 18 C 0.107 3.893 19 N -0.739 5.739 20 C 0.529 3.471 21 O -0.517 6.517 22 C -0.076 4.076 23 C -0.168 4.168 24 H 0.280 0.720 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.018 0.982 29 H 0.347 0.653 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.407 0.593 35 H 0.089 0.911 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 -14.483 1.619 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.248 4.248 11 C -0.105 4.105 12 C -0.214 4.214 13 C -0.005 4.005 14 N -0.297 5.297 15 C -0.063 4.063 16 H 0.094 0.906 17 C -0.175 4.175 18 C -0.018 4.018 19 N -0.397 5.397 20 C 0.314 3.686 21 O -0.390 6.390 22 C -0.095 4.095 23 C -0.187 4.187 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.167 0.833 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.263 -13.525 0.878 15.377 hybrid contribution 0.521 0.075 0.216 0.569 sum -6.742 -13.450 1.094 15.085 Atomic orbital electron populations 1.69841 1.07560 1.29148 1.35071 1.25908 0.94695 1.01251 0.92325 0.86335 0.80467 0.80726 0.79295 1.19300 1.20361 1.18677 1.19600 0.98098 0.91348 1.40368 0.90526 1.17626 0.91082 0.91966 0.88311 1.20913 1.03860 0.92914 1.07152 1.20352 0.95885 0.96204 0.98036 1.18883 1.00382 0.93124 1.09013 1.20720 0.90011 0.94492 0.95310 1.60462 1.32084 1.30659 1.06452 1.22177 0.95354 0.93283 0.95507 0.90624 1.22835 0.95758 1.01468 0.97442 1.21962 0.98287 0.94838 0.86758 1.46163 1.13693 1.49117 1.30735 1.20857 0.84730 0.78186 0.84822 1.90733 1.83529 1.36105 1.28650 1.20559 0.97671 0.92460 0.98781 1.21325 0.99466 0.96779 1.01149 0.90902 0.89207 0.89942 0.90682 0.96338 0.83324 0.89279 0.88787 0.90349 0.91303 0.75456 0.89290 0.86541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.08 10.95 55.55 0.61 -20.47 16 2 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 3 Si 0.91 19.07 29.59 -169.99 -5.03 14.04 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.62 9.05 -37.74 -0.34 -12.96 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.11 3.08 5.58 -106.82 -0.60 2.49 16 10 C -0.23 -5.71 9.80 -38.87 -0.38 -6.09 16 11 C -0.09 -1.93 9.67 -39.66 -0.38 -2.32 16 12 C -0.21 -4.79 5.42 -104.32 -0.56 -5.36 16 13 C 0.12 2.30 5.60 -4.98 -0.03 2.27 16 14 N -0.66 -10.91 6.29 -108.01 -0.68 -11.59 16 15 C 0.05 0.65 3.24 -67.73 -0.22 0.43 16 16 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 17 C -0.14 -1.16 6.62 -25.09 -0.17 -1.33 16 18 C 0.11 0.75 7.78 -3.12 -0.02 0.73 16 19 N -0.74 -7.72 6.24 -59.20 -0.37 -8.09 16 20 C 0.53 7.97 8.05 -10.86 -0.09 7.89 16 21 O -0.52 -10.27 16.95 5.56 0.09 -10.18 16 22 C -0.08 -1.89 9.67 -39.66 -0.38 -2.28 16 23 C -0.17 -4.56 8.70 -38.87 -0.34 -4.89 16 24 H 0.28 6.79 8.30 -40.82 -0.34 6.46 16 25 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 26 H 0.08 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.07 1.54 7.06 -51.93 -0.37 1.18 16 28 H 0.02 0.32 8.02 -51.93 -0.42 -0.10 16 29 H 0.35 5.28 8.45 -39.29 -0.33 4.95 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.41 3.59 8.96 -40.82 -0.37 3.23 16 35 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 36 H 0.12 3.28 6.16 -52.49 -0.32 2.95 16 LS Contribution 305.07 15.07 4.60 4.60 Total: -1.00 -31.81 305.07 -9.10 -40.91 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.72 Total: 10.32 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -3.60 Total: -19.55 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.44 Total: -40.14 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.81 -9.10 -40.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693958815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.374 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds