Wall clock time and date at job start Mon Mar 30 2020 05:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 119.99777 * 2 1 4 4 H 1.48507 * 109.46890 * 269.99909 * 3 2 1 5 5 H 1.48497 * 109.47505 * 29.99659 * 3 2 1 6 6 H 1.48499 * 109.47519 * 150.00022 * 3 2 1 7 7 C 1.39945 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00429 * 197.84300 * 7 2 1 9 9 C 1.41398 * 119.99615 * 17.84843 * 7 2 1 10 10 C 1.40713 * 120.24258 * 204.38194 * 9 7 2 11 11 C 1.37621 * 119.74757 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24364 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.74557 * 180.02562 * 12 11 10 14 14 N 1.46894 * 109.47155 * 90.00433 * 13 12 11 15 15 C 1.46896 * 111.00142 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.43627 * 36.08505 * 15 14 13 17 17 C 1.54633 * 110.48716 * 158.76710 * 15 14 13 18 18 C 1.54484 * 101.76205 * 143.47505 * 17 15 14 19 19 N 1.46760 * 105.47675 * 334.58628 * 18 17 15 20 20 C 1.34427 * 111.29847 * 17.01526 * 19 18 17 21 21 O 1.21281 * 124.93937 * 179.55934 * 20 19 18 22 22 C 1.38637 * 120.50227 * 0.30126 * 12 11 10 23 23 C 1.37614 * 120.24867 * 359.43929 * 22 12 11 24 24 H 0.97000 * 120.00132 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.13122 * 0.02562 * 10 9 7 26 26 H 1.07995 * 119.87667 * 180.02562 * 11 10 9 27 27 H 1.08999 * 109.46716 * 210.00126 * 13 12 11 28 28 H 1.08998 * 109.46942 * 329.99776 * 13 12 11 29 29 H 1.00903 * 111.00021 * 303.94860 * 14 13 12 30 30 H 1.08996 * 110.97295 * 261.59303 * 17 15 14 31 31 H 1.08999 * 110.96889 * 25.35942 * 17 15 14 32 32 H 1.08992 * 110.24675 * 215.58326 * 18 17 15 33 33 H 1.09006 * 110.31546 * 93.62265 * 18 17 15 34 34 H 0.96995 * 124.35312 * 197.03810 * 19 18 17 35 35 H 1.07998 * 119.87417 * 179.69778 * 22 12 11 36 36 H 1.07999 * 120.13141 * 180.27117 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4396 2.6527 0.6999 6 1 3.5398 1.4404 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0491 -1.2343 0.2871 9 6 1.3521 -2.4072 -0.3743 10 6 1.8260 -3.6498 0.0855 11 6 1.1801 -4.8068 -0.2860 12 6 0.0662 -4.7511 -1.1096 13 6 -0.6328 -6.0250 -1.5091 14 7 -1.6780 -6.3390 -0.5259 15 6 -2.3828 -7.5772 -0.8839 16 1 -1.6911 -8.2948 -1.3253 17 6 -3.0765 -8.1835 0.3580 18 6 -4.3788 -8.7472 -0.2526 19 7 -4.6255 -7.9458 -1.4571 20 6 -3.5198 -7.2825 -1.8372 21 8 -3.4446 -6.5543 -2.8041 22 6 -0.4060 -3.5328 -1.5732 23 6 0.2210 -2.3628 -1.2101 24 1 -0.4850 0.8400 0.0004 25 1 2.6933 -3.6954 0.7275 26 1 1.5417 -5.7616 0.0659 27 1 -1.0854 -5.8981 -2.4925 28 1 0.0898 -6.8403 -1.5442 29 1 -1.2930 -6.3980 0.4049 30 1 -2.4726 -8.9802 0.7922 31 1 -3.2942 -7.4134 1.0981 32 1 -5.2042 -8.6355 0.4503 33 1 -4.2492 -9.7966 -0.5177 34 1 -5.4770 -7.9004 -1.9194 35 1 -1.2716 -3.5016 -2.2182 36 1 -0.1511 -1.4145 -1.5688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693958815.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:29 Heat of formation + Delta-G solvation = -42.078428 kcal Electronic energy + Delta-G solvation = -18566.341299 eV Core-core repulsion = 15627.466059 eV Total energy + Delta-G solvation = -2938.875240 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27667 -39.51115 -37.47111 -36.59188 -35.24903 -32.39743 -31.17550 -30.56315 -28.45507 -26.86503 -24.66073 -22.93416 -22.82551 -21.57883 -20.99357 -19.20648 -18.36458 -17.64653 -17.17864 -16.55043 -16.17109 -15.73002 -15.55852 -15.19677 -14.83350 -14.66162 -14.56588 -14.15373 -13.80853 -13.56625 -13.39413 -13.18622 -12.81464 -12.72926 -12.64284 -12.25166 -12.08686 -11.95082 -11.40196 -11.22461 -11.02168 -10.97379 -10.03009 -9.37319 -9.34314 -9.15837 -8.62320 -6.32629 0.94583 1.16443 1.37653 1.50046 1.51651 1.62176 2.21015 2.46323 2.71207 3.38786 3.45564 3.64837 3.83109 4.14653 4.22674 4.32319 4.34538 4.52150 4.56792 4.67880 4.79555 4.88090 5.00999 5.09071 5.16679 5.17336 5.39730 5.47462 5.72351 5.88682 5.95657 6.05892 6.06437 6.12721 6.29916 6.39439 6.53986 6.72513 6.95210 7.05843 7.32933 8.34553 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.038876 B = 0.003917 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.059981 B = 7145.827741 C = 7396.850220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.502 4.502 8 H 0.078 0.922 9 C 0.080 3.920 10 C -0.240 4.240 11 C -0.079 4.079 12 C -0.201 4.201 13 C 0.133 3.867 14 N -0.679 5.679 15 C 0.048 3.952 16 H 0.091 0.909 17 C -0.126 4.126 18 C 0.104 3.896 19 N -0.727 5.727 20 C 0.512 3.488 21 O -0.582 6.582 22 C -0.089 4.089 23 C -0.193 4.193 24 H 0.287 0.713 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.355 0.645 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.414 0.586 35 H 0.084 0.916 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.721 -16.826 3.111 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.531 4.531 8 H 0.096 0.904 9 C 0.078 3.922 10 C -0.260 4.260 11 C -0.097 4.097 12 C -0.202 4.202 13 C 0.005 3.995 14 N -0.314 5.314 15 C -0.065 4.065 16 H 0.108 0.892 17 C -0.164 4.164 18 C -0.019 4.019 19 N -0.383 5.383 20 C 0.298 3.702 21 O -0.460 6.460 22 C -0.108 4.108 23 C -0.212 4.212 24 H 0.097 0.903 25 H 0.120 0.880 26 H 0.143 0.857 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.176 0.824 30 H 0.141 0.859 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.253 0.747 35 H 0.102 0.898 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.254 -15.929 2.416 17.669 hybrid contribution 0.388 0.601 -0.246 0.756 sum -6.866 -15.328 2.170 16.935 Atomic orbital electron populations 1.69910 1.09191 1.30456 1.35810 1.26812 0.95436 1.04705 0.91208 0.85183 0.79147 0.75801 0.79424 1.18921 1.19243 1.17844 1.19869 0.98419 0.92549 1.42305 0.90412 1.17967 0.91667 0.93437 0.89120 1.21181 1.04454 0.92990 1.07336 1.20701 0.94929 0.97197 0.96890 1.19288 1.00037 0.93738 1.07166 1.20498 0.90829 0.93327 0.94860 1.60194 1.31399 1.33576 1.06224 1.22310 0.94816 0.92035 0.97360 0.89177 1.22899 0.96241 1.02009 0.95273 1.22309 0.98481 0.95569 0.85569 1.46234 1.12841 1.47907 1.31291 1.21423 0.86527 0.77850 0.84447 1.90698 1.84813 1.39188 1.31350 1.20679 0.97692 0.93222 0.99211 1.21234 1.00677 0.96639 1.02673 0.90277 0.88044 0.85727 0.92916 0.93663 0.82354 0.85871 0.89411 0.87841 0.88321 0.74685 0.89820 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.79 10.95 21.83 0.24 -45.55 16 2 C 0.03 1.73 5.14 85.26 0.44 2.17 16 3 Si 0.98 39.72 29.59 68.60 2.03 41.75 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 7 C -0.50 -28.13 9.05 23.46 0.21 -27.92 16 8 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 9 C 0.08 4.55 5.58 -21.29 -0.12 4.43 16 10 C -0.24 -11.96 9.80 22.73 0.22 -11.74 16 11 C -0.08 -3.41 9.67 22.22 0.21 -3.19 16 12 C -0.20 -8.97 5.42 -19.67 -0.11 -9.08 16 13 C 0.13 4.85 5.60 85.56 0.48 5.33 16 14 N -0.68 -21.21 6.29 -495.63 -3.12 -24.33 16 15 C 0.05 1.12 3.24 44.91 0.15 1.26 16 16 H 0.09 1.86 7.87 -2.39 -0.02 1.85 16 17 C -0.13 -1.61 6.62 31.65 0.21 -1.41 16 18 C 0.10 1.01 7.78 86.83 0.68 1.69 16 19 N -0.73 -13.59 6.24 -459.80 -2.87 -16.46 16 20 C 0.51 14.98 8.05 87.90 0.71 15.69 16 21 O -0.58 -23.79 16.95 -3.03 -0.05 -23.85 16 22 C -0.09 -4.62 9.67 22.22 0.21 -4.41 16 23 C -0.19 -10.99 8.70 22.73 0.20 -10.79 16 24 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 25 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 26 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 27 H 0.05 2.18 7.06 -2.39 -0.02 2.17 16 28 H 0.05 1.41 8.02 -2.39 -0.02 1.39 16 29 H 0.36 9.90 8.45 -89.69 -0.76 9.14 16 30 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.28 8.08 -2.39 -0.02 1.27 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.41 6.61 8.96 -92.71 -0.83 5.78 16 35 H 0.08 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.09 5.67 6.16 -2.91 -0.02 5.65 16 Total: -1.00 -73.96 305.07 -0.76 -74.72 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.48 Total: 31.68 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 3.49 Total: -37.96 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -5.75 Total: -86.34 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -73.96 -0.76 -74.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693958815.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.640 kcal (2) G-P(sol) polarization free energy of solvation -73.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds