Wall clock time and date at job start Mon Mar 30 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 120.00028 * 2 1 4 4 O 1.21282 * 119.99998 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.00091 * 0.02562 * 3 2 1 6 6 S 1.80997 * 109.47007 * 179.97438 * 5 3 2 7 7 C 1.76206 * 99.99718 * 180.02562 * 6 5 3 8 8 H 1.07997 * 119.99734 * 359.97438 * 7 6 5 9 9 C 1.38796 * 119.99722 * 179.97438 * 7 6 5 10 10 N 1.31630 * 120.00516 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99745 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46800 * 90.00322 * 11 9 7 13 13 H 1.48502 * 109.47188 * 209.99972 * 11 9 7 14 14 H 1.48496 * 109.46985 * 330.00395 * 11 9 7 15 15 C 1.46504 * 119.99873 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.36781 * 182.17939 * 15 2 1 17 17 C 1.54382 * 110.32514 * 304.36307 * 15 2 1 18 18 N 1.48856 * 104.63073 * 142.74962 * 17 15 2 19 19 C 1.48562 * 104.07618 * 320.54703 * 18 17 15 20 20 C 1.54257 * 110.32451 * 60.00133 * 15 2 1 21 21 H 1.08997 * 110.41265 * 0.04242 * 20 15 2 22 22 O 1.42900 * 110.32640 * 122.20472 * 20 15 2 23 23 H 1.08995 * 109.47432 * 269.99542 * 1 2 3 24 24 H 1.08997 * 109.46951 * 30.00152 * 1 2 3 25 25 H 1.09002 * 109.47055 * 150.00174 * 1 2 3 26 26 H 1.09004 * 109.46597 * 299.99601 * 5 3 2 27 27 H 1.08996 * 109.47152 * 59.99319 * 5 3 2 28 28 H 0.96994 * 120.00451 * 179.97438 * 10 9 7 29 29 H 1.09003 * 110.41233 * 261.53021 * 17 15 2 30 30 H 1.09004 * 110.41109 * 23.85557 * 17 15 2 31 31 H 1.00899 * 111.13566 * 201.00398 * 18 17 15 32 32 H 1.09002 * 110.41176 * 280.62937 * 19 18 17 33 33 H 1.09002 * 110.41204 * 158.30844 * 19 18 17 34 34 H 0.96694 * 114.00475 * 177.09238 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4415 5.2082 0.0026 8 1 0.3762 5.0304 0.0024 9 6 1.9282 6.5080 0.0039 10 7 3.2266 6.7246 0.0047 11 14 0.7407 7.9500 0.0047 12 1 0.4256 8.3309 1.4050 13 1 1.3623 9.1035 -0.6941 14 1 -0.5096 7.5619 -0.6961 15 6 2.1975 -1.2688 -0.0006 16 1 3.2715 -1.0868 0.0384 17 6 1.7580 -2.1423 1.1941 18 7 1.7598 -3.5331 0.6637 19 6 1.2130 -3.3964 -0.7108 20 6 1.8390 -2.0938 -1.2537 21 1 1.1187 -1.5558 -1.8698 22 8 3.0163 -2.3862 -2.0090 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 0.7584 2.5302 -0.8892 27 1 0.7590 2.5298 0.8907 28 1 3.5668 7.6330 0.0052 29 1 2.4682 -2.0480 2.0156 30 1 0.7577 -1.8607 1.5232 31 1 1.1791 -4.1375 1.2255 32 1 0.1266 -3.3125 -0.6812 33 1 1.5112 -4.2462 -1.3249 34 1 2.8581 -2.9408 -2.7851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700971370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:28 Heat of formation + Delta-G solvation = -68.899641 kcal Electronic energy + Delta-G solvation = -17542.768196 eV Core-core repulsion = 14602.340758 eV Total energy + Delta-G solvation = -2940.427438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.23068 -38.34639 -35.72301 -34.73233 -32.43270 -30.35906 -28.47258 -28.04313 -26.55060 -25.46868 -22.15219 -21.14386 -19.19149 -17.87527 -17.48486 -17.07114 -16.48090 -15.57730 -15.18619 -15.00535 -14.80604 -14.12872 -13.73175 -13.64301 -13.20757 -13.00536 -12.76286 -12.57046 -12.43978 -12.30761 -12.01177 -11.73215 -11.07285 -11.03327 -10.95738 -10.76515 -10.24180 -9.81462 -9.40551 -9.06994 -8.95137 -8.63978 -8.22989 -6.50673 -6.21743 -3.92722 2.78529 2.99988 3.21856 3.23680 3.29492 3.53959 3.93597 4.04785 4.19713 4.40829 4.49627 4.77993 4.87495 4.92165 5.10307 5.12104 5.13372 5.28655 5.33529 5.45967 5.53215 5.61588 5.69208 5.87281 5.96851 6.10005 6.16616 6.63120 6.90022 7.45100 7.51133 7.58952 8.34617 8.51636 9.23282 10.85683 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.047031 B = 0.004207 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.204218 B = 6654.006069 C = 6847.856374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.619 5.619 3 C 0.534 3.466 4 O -0.507 6.507 5 C -0.149 4.149 6 S -0.060 6.060 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.143 3.857 16 H 0.124 0.876 17 C 0.029 3.971 18 N -0.656 5.656 19 C 0.004 3.996 20 C 0.090 3.910 21 H 0.068 0.932 22 O -0.548 6.548 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.269 0.731 29 H 0.092 0.908 30 H 0.051 0.949 31 H 0.339 0.661 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 -19.311 -0.978 21.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.356 5.356 3 C 0.322 3.678 4 O -0.380 6.380 5 C -0.299 4.299 6 S 0.167 5.833 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.038 3.962 16 H 0.142 0.858 17 C -0.102 4.102 18 N -0.286 5.286 19 C -0.126 4.126 20 C 0.029 3.971 21 H 0.086 0.914 22 O -0.353 6.353 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.154 0.846 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.402 -18.847 -0.683 19.916 hybrid contribution -3.644 0.679 -0.259 3.715 sum -10.045 -18.167 -0.942 20.781 Atomic orbital electron populations 1.21761 0.79955 1.03076 1.01867 1.47864 1.06544 1.05160 1.76023 1.20410 0.88018 0.84438 0.74896 1.90715 1.13703 1.86553 1.47035 1.23557 1.04572 0.97078 1.04741 1.85455 1.07933 0.93263 1.96698 1.22854 0.94283 0.92215 1.59062 0.90953 1.24989 0.95661 0.98361 0.94518 1.70016 1.11749 1.21689 1.46760 0.86170 0.80251 0.80736 0.78347 1.20264 1.20734 1.19711 1.21531 1.00345 0.82586 0.91716 0.85778 1.23315 1.01034 0.88136 0.97678 1.63738 1.53169 1.08855 1.02801 1.23694 0.97247 0.99108 0.92578 1.22911 0.87330 0.93746 0.93091 0.91389 1.86632 1.32315 1.73591 1.42770 0.92517 0.90197 0.91801 0.89216 0.89177 0.92154 0.88969 0.93096 0.84592 0.93413 0.89449 0.77699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 8.82 59.85 0.53 1.31 16 2 N -0.62 -8.92 2.79 -172.35 -0.48 -9.40 16 3 C 0.53 10.41 7.69 -10.99 -0.08 10.33 16 4 O -0.51 -12.04 15.22 5.56 0.08 -11.95 16 5 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 6 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 10 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 11 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.14 1.96 3.27 -66.55 -0.22 1.74 16 16 H 0.12 2.18 6.81 -51.93 -0.35 1.83 16 17 C 0.03 0.31 7.08 -2.01 -0.01 0.29 16 18 N -0.66 -6.18 7.64 -109.42 -0.84 -7.01 16 19 C 0.00 0.03 7.19 -2.18 -0.02 0.02 16 20 C 0.09 1.00 3.60 -25.35 -0.09 0.91 16 21 H 0.07 0.71 7.09 -51.93 -0.37 0.34 16 22 O -0.55 -6.79 13.27 -35.23 -0.47 -7.25 16 23 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 24 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 25 H 0.06 0.49 6.95 -51.93 -0.36 0.13 16 26 H 0.09 1.68 7.40 -51.91 -0.38 1.29 16 27 H 0.09 1.69 8.11 -51.92 -0.42 1.26 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.47 6.81 -51.93 -0.35 0.12 16 31 H 0.34 2.38 8.93 -39.29 -0.35 2.03 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 34 H 0.38 2.70 9.09 45.56 0.41 3.12 16 LS Contribution 296.91 15.07 4.47 4.47 Total: -1.00 -35.94 296.91 -6.98 -42.92 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.73 Total: 2.48 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 0.47 Total: -1.22 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.58 Total: -41.91 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.38 Total: -19.21 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -35.94 -6.98 -42.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700971370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.979 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds