Wall clock time and date at job start Mon Mar 30 2020 04:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34770 * 120.00028 * 2 1 4 4 O 1.21282 * 119.99998 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.00091 * 0.02562 * 3 2 1 6 6 S 1.80997 * 109.47007 * 179.97438 * 5 3 2 7 7 C 1.76206 * 99.99718 * 180.02562 * 6 5 3 8 8 H 1.07997 * 119.99734 * 359.97438 * 7 6 5 9 9 C 1.38796 * 119.99722 * 179.97438 * 7 6 5 10 10 N 1.31630 * 120.00516 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99745 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46800 * 90.00322 * 11 9 7 13 13 H 1.48502 * 109.47188 * 209.99972 * 11 9 7 14 14 H 1.48496 * 109.46985 * 330.00395 * 11 9 7 15 15 C 1.46504 * 119.99873 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.36781 * 182.17939 * 15 2 1 17 17 C 1.54382 * 110.32514 * 304.36307 * 15 2 1 18 18 N 1.48856 * 104.63073 * 142.74962 * 17 15 2 19 19 C 1.48562 * 104.07618 * 320.54703 * 18 17 15 20 20 C 1.54257 * 110.32451 * 60.00133 * 15 2 1 21 21 H 1.08997 * 110.41265 * 0.04242 * 20 15 2 22 22 O 1.42900 * 110.32640 * 122.20472 * 20 15 2 23 23 H 1.08995 * 109.47432 * 269.99542 * 1 2 3 24 24 H 1.08997 * 109.46951 * 30.00152 * 1 2 3 25 25 H 1.09002 * 109.47055 * 150.00174 * 1 2 3 26 26 H 1.09004 * 109.46597 * 299.99601 * 5 3 2 27 27 H 1.08996 * 109.47152 * 59.99319 * 5 3 2 28 28 H 0.96994 * 120.00451 * 179.97438 * 10 9 7 29 29 H 1.09003 * 110.41233 * 261.53021 * 17 15 2 30 30 H 1.09004 * 110.41109 * 23.85557 * 17 15 2 31 31 H 1.00899 * 111.13566 * 201.00398 * 18 17 15 32 32 H 1.09002 * 110.41176 * 280.62937 * 19 18 17 33 33 H 1.09002 * 110.41204 * 158.30844 * 19 18 17 34 34 H 0.96694 * 114.00475 * 177.09238 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5616 3.8480 0.0012 7 6 1.4415 5.2082 0.0026 8 1 0.3762 5.0304 0.0024 9 6 1.9282 6.5080 0.0039 10 7 3.2266 6.7246 0.0047 11 14 0.7407 7.9500 0.0047 12 1 0.4256 8.3309 1.4050 13 1 1.3623 9.1035 -0.6941 14 1 -0.5096 7.5619 -0.6961 15 6 2.1975 -1.2688 -0.0006 16 1 3.2715 -1.0868 0.0384 17 6 1.7580 -2.1423 1.1941 18 7 1.7598 -3.5331 0.6637 19 6 1.2130 -3.3964 -0.7108 20 6 1.8390 -2.0938 -1.2537 21 1 1.1187 -1.5558 -1.8698 22 8 3.0163 -2.3862 -2.0090 23 1 -0.3634 -0.0001 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 0.7584 2.5302 -0.8892 27 1 0.7590 2.5298 0.8907 28 1 3.5668 7.6330 0.0052 29 1 2.4682 -2.0480 2.0156 30 1 0.7577 -1.8607 1.5232 31 1 1.1791 -4.1375 1.2255 32 1 0.1266 -3.3125 -0.6812 33 1 1.5112 -4.2462 -1.3249 34 1 2.8581 -2.9408 -2.7851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700971370.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:28 Heat of formation + Delta-G solvation = -100.424510 kcal Electronic energy + Delta-G solvation = -17544.135217 eV Core-core repulsion = 14602.340758 eV Total energy + Delta-G solvation = -2941.794459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.39157 -39.53079 -36.74690 -35.82309 -34.58782 -31.69127 -29.29157 -29.21273 -27.74383 -27.46747 -22.96097 -22.27876 -20.40987 -19.66920 -18.73688 -17.98131 -17.75777 -16.88540 -16.77678 -16.44235 -16.16959 -15.62644 -14.89152 -14.58053 -14.48507 -14.25697 -14.11301 -13.62369 -13.59898 -13.28250 -13.16013 -12.99987 -12.88257 -12.82007 -12.57822 -11.92722 -11.72337 -11.14315 -11.08995 -10.94355 -10.27446 -9.81671 -9.61608 -8.69161 -8.34539 -6.13936 1.22254 1.43091 1.44170 1.49687 1.55839 1.96099 2.27000 2.99742 3.12636 3.24323 3.31099 3.61679 3.64074 3.75919 3.97097 4.07157 4.19528 4.27794 4.39398 4.44628 4.57339 4.59827 4.72658 4.86039 4.89365 4.89773 5.31117 5.41387 5.65408 6.16747 6.20032 6.35380 6.87242 7.06262 7.07414 8.74890 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.047031 B = 0.004207 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.204218 B = 6654.006069 C = 6847.856374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.603 5.603 3 C 0.530 3.470 4 O -0.565 6.565 5 C -0.119 4.119 6 S -0.158 6.158 7 C -0.545 4.545 8 H 0.085 0.915 9 C 0.013 3.987 10 N -0.913 5.913 11 Si 1.001 2.999 12 H -0.267 1.267 13 H -0.279 1.279 14 H -0.256 1.256 15 C 0.132 3.868 16 H 0.074 0.926 17 C 0.039 3.961 18 N -0.669 5.669 19 C 0.014 3.986 20 C 0.089 3.911 21 H 0.079 0.921 22 O -0.579 6.579 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.271 0.729 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.355 0.645 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.035 -20.600 -1.117 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.338 5.338 3 C 0.318 3.682 4 O -0.443 6.443 5 C -0.270 4.270 6 S 0.069 5.931 7 C -0.692 4.692 8 H 0.103 0.897 9 C -0.192 4.192 10 N -0.549 5.549 11 Si 0.822 3.178 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.180 1.180 15 C 0.027 3.973 16 H 0.092 0.908 17 C -0.092 4.092 18 N -0.301 5.301 19 C -0.115 4.115 20 C 0.029 3.971 21 H 0.097 0.903 22 O -0.388 6.388 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.173 0.827 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.138 -20.209 -0.828 22.625 hybrid contribution -2.514 0.912 -0.235 2.685 sum -12.652 -19.297 -1.063 23.099 Atomic orbital electron populations 1.22155 0.76642 1.04991 1.03854 1.47798 1.08414 1.03850 1.73695 1.20310 0.87325 0.85616 0.74956 1.90697 1.16038 1.87383 1.50166 1.23357 1.02596 0.94411 1.06684 1.85703 1.12836 0.97493 1.97053 1.23192 0.94616 0.92475 1.58947 0.89674 1.26157 0.97595 1.01747 0.93663 1.70193 1.14242 1.22492 1.47991 0.84927 0.77867 0.76187 0.78820 1.19265 1.20410 1.17975 1.21635 0.97728 0.82807 0.95090 0.90812 1.23145 1.01705 0.88504 0.95816 1.63677 1.54548 1.08091 1.03748 1.23677 0.98598 0.97682 0.91580 1.22949 0.87097 0.95066 0.92017 0.90341 1.86586 1.33620 1.74458 1.44138 0.90425 0.89933 0.88368 0.87076 0.87007 0.91998 0.90459 0.90718 0.82692 0.90368 0.88076 0.75308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.06 8.82 127.77 1.13 2.19 16 2 N -0.60 -16.60 2.79 -817.59 -2.28 -18.88 16 3 C 0.53 20.92 7.69 87.66 0.67 21.59 16 4 O -0.56 -28.39 15.22 -3.04 -0.05 -28.44 16 5 C -0.12 -4.82 4.71 71.24 0.34 -4.48 16 6 S -0.16 -8.96 20.57 -56.49 -1.16 -10.12 16 7 C -0.54 -31.13 9.50 67.95 0.65 -30.48 16 8 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 9 C 0.01 0.74 5.49 84.86 0.47 1.21 16 10 N -0.91 -56.59 13.22 21.65 0.29 -56.31 16 11 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 14 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 15 C 0.13 3.55 3.27 45.89 0.15 3.70 16 16 H 0.07 2.76 6.81 -2.39 -0.02 2.75 16 17 C 0.04 0.76 7.08 86.39 0.61 1.37 16 18 N -0.67 -10.75 7.64 -500.10 -3.82 -14.57 16 19 C 0.01 0.18 7.19 86.45 0.62 0.80 16 20 C 0.09 1.80 3.60 31.49 0.11 1.91 16 21 H 0.08 1.40 7.09 -2.39 -0.02 1.38 16 22 O -0.58 -14.02 13.27 -148.98 -1.98 -16.00 16 23 H 0.08 1.03 7.88 -2.39 -0.02 1.01 16 24 H 0.08 1.37 6.44 -2.39 -0.02 1.35 16 25 H 0.10 0.99 6.95 -2.39 -0.02 0.98 16 26 H 0.11 3.99 7.40 -2.39 -0.02 3.97 16 27 H 0.11 4.00 8.11 -2.40 -0.02 3.98 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.10 6.81 -2.39 -0.02 1.09 16 31 H 0.36 3.74 8.93 -89.69 -0.80 2.94 16 32 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 1.06 8.07 -2.39 -0.02 1.04 16 34 H 0.40 5.19 9.09 -74.06 -0.67 4.52 16 Total: -1.00 -83.14 296.91 -2.57 -85.71 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -0.34 Total: 15.34 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.74 Total: -2.19 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -5.81 Total: -89.76 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -2.02 Total: -44.44 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.16 Total: -10.12 kcal Total: -83.14 -2.57 -85.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700971370.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.716 kcal (2) G-P(sol) polarization free energy of solvation -83.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds