Wall clock time and date at job start Mon Mar 30 2020 04:10:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31633 * 1
3 3 Si 1.86805 * 119.99775 * 2 1
4 4 H 1.48505 * 109.46859 * 239.99854 * 3 2 1
5 5 H 1.48501 * 109.47280 * 359.97438 * 3 2 1
6 6 H 1.48493 * 109.47137 * 119.99854 * 3 2 1
7 7 C 1.38791 * 120.00208 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1
9 9 S 1.76199 * 119.99909 * 0.02562 * 7 2 1
10 10 C 1.81001 * 100.00064 * 179.97438 * 9 7 2
11 11 C 1.50705 * 109.47182 * 180.02562 * 10 9 7
12 12 O 1.21280 * 119.99694 * 359.97438 * 11 10 9
13 13 N 1.34776 * 119.99904 * 180.02562 * 11 10 9
14 14 C 1.44888 * 118.74852 * 0.02562 * 13 11 10
15 15 C 1.54771 * 109.68337 * 90.27667 * 14 13 11
16 16 N 1.41439 * 109.98568 * 69.73852 * 15 14 13
17 17 C 1.46192 * 116.35004 * 296.51658 * 16 15 14
18 18 C 1.51077 * 109.08630 * 87.00782 * 17 16 15
19 19 H 1.08997 * 109.45353 * 27.67506 * 18 17 16
20 20 O 1.42903 * 109.35781 * 147.52605 * 18 17 16
21 21 C 1.47613 * 118.74532 * 179.97438 * 13 11 10
22 22 H 0.97001 * 119.99831 * 0.02562 * 1 2 3
23 23 H 1.09000 * 109.47529 * 60.00011 * 10 9 7
24 24 H 1.09004 * 109.47061 * 299.99958 * 10 9 7
25 25 H 1.08999 * 109.43398 * 210.33868 * 14 13 11
26 26 H 1.09003 * 109.43343 * 330.20716 * 14 13 11
27 27 H 1.09003 * 109.38487 * 189.90021 * 15 14 13
28 28 H 1.09000 * 109.38369 * 309.57899 * 15 14 13
29 29 H 1.00897 * 111.00020 * 64.72436 * 16 15 14
30 30 H 1.08996 * 109.54031 * 206.91347 * 17 16 15
31 31 H 1.08998 * 109.53378 * 327.07049 * 17 16 15
32 32 H 0.96692 * 114.00558 * 300.20556 * 20 18 17
33 33 H 1.09002 * 109.11401 * 342.15205 * 21 13 11
34 34 H 1.09000 * 109.11309 * 101.27213 * 21 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.1041 1.6964 -1.2125
5 1 1.2853 2.7465 -0.0006
6 1 3.1040 1.6965 1.2125
7 6 2.0103 -1.2019 0.0005
8 1 3.0903 -1.2019 0.0010
9 16 1.1294 -2.7279 0.0005
10 6 2.5159 -3.8913 0.0005
11 6 1.9875 -5.3027 -0.0001
12 8 0.7912 -5.5022 0.0000
13 7 2.8443 -6.3430 0.0003
14 6 4.2678 -6.0734 0.0019
15 6 4.7798 -5.9840 1.4598
16 7 4.7459 -7.2627 2.0633
17 6 3.4264 -7.8734 2.2161
18 6 3.0825 -8.6287 0.9537
19 1 4.0002 -8.9584 0.4665
20 8 2.2854 -9.7675 1.2854
21 6 2.2965 -7.7138 0.0003
22 1 -0.4850 0.8401 -0.0004
23 1 3.1246 -3.7313 0.8905
24 1 3.1245 -3.7312 -0.8895
25 1 4.7898 -6.8773 -0.5171
26 1 4.4587 -5.1292 -0.5082
27 1 5.8037 -5.6101 1.4614
28 1 4.1459 -5.3004 2.0245
29 1 5.3863 -7.8950 1.6071
30 1 3.4389 -8.5617 3.0611
31 1 2.6829 -7.0957 2.3904
32 1 2.7187 -10.3897 1.8854
33 1 1.2536 -7.6814 0.3155
34 1 2.3514 -8.1200 -1.0097
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000700973436.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:10:43
Heat of formation + Delta-G solvation = -72.123950 kcal
Electronic energy + Delta-G solvation = -17839.353158 eV
Core-core repulsion = 14898.785903 eV
Total energy + Delta-G solvation = -2940.567254 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 260.098 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.43620 -38.20970 -36.50383 -34.33558 -32.44261 -31.82048 -29.25077 -27.02359
-25.93690 -25.44323 -22.50045 -21.53061 -19.07030 -17.90691 -17.81816 -16.87089
-16.45859 -15.94004 -15.21785 -15.14456 -14.81533 -14.32796 -13.94828 -13.81342
-13.51601 -13.06133 -12.87737 -12.57550 -12.11894 -11.94025 -11.57589 -11.55701
-11.43236 -11.05536 -11.04649 -10.78427 -10.40677 -9.83441 -9.45792 -9.07538
-8.97464 -8.31128 -8.23631 -6.52475 -6.22715 -3.94059 2.71812 2.96784
3.22469 3.22720 3.28017 3.50846 3.86889 4.18244 4.21998 4.46095
4.55946 4.80375 4.82327 4.91751 4.98756 5.11940 5.13689 5.43223
5.44103 5.50474 5.61791 5.77999 5.82102 5.86454 5.90068 6.08667
6.51787 6.93552 7.15366 7.31884 7.42537 7.57747 8.33440 8.46709
9.22325 10.84658
Molecular weight = 260.10amu
Principal moments of inertia in cm(-1)
A = 0.038102 B = 0.004829 C = 0.004474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 734.697702 B = 5797.317373 C = 6256.779186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.868 5.868
2 C 0.075 3.925
3 Si 0.919 3.081
4 H -0.274 1.274
5 H -0.283 1.283
6 H -0.274 1.274
7 C -0.536 4.536
8 H 0.072 0.928
9 S -0.061 6.061
10 C -0.149 4.149
11 C 0.530 3.470
12 O -0.511 6.511
13 N -0.614 5.614
14 C 0.064 3.936
15 C 0.052 3.948
16 N -0.699 5.699
17 C 0.042 3.958
18 C 0.067 3.933
19 H 0.055 0.945
20 O -0.561 6.561
21 C 0.117 3.883
22 H 0.269 0.731
23 H 0.090 0.910
24 H 0.090 0.910
25 H 0.073 0.927
26 H 0.090 0.910
27 H 0.089 0.911
28 H 0.080 0.920
29 H 0.342 0.658
30 H 0.080 0.920
31 H 0.082 0.918
32 H 0.381 0.619
33 H 0.103 0.897
34 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.228 -16.194 2.038 20.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.135 4.135
3 Si 0.745 3.255
4 H -0.199 1.199
5 H -0.208 1.208
6 H -0.199 1.199
7 C -0.684 4.684
8 H 0.090 0.910
9 S 0.166 5.834
10 C -0.300 4.300
11 C 0.318 3.682
12 O -0.385 6.385
13 N -0.351 5.351
14 C -0.062 4.062
15 C -0.080 4.080
16 N -0.331 5.331
17 C -0.088 4.088
18 C 0.006 3.994
19 H 0.073 0.927
20 O -0.366 6.366
21 C -0.006 4.006
22 H 0.079 0.921
23 H 0.109 0.891
24 H 0.108 0.892
25 H 0.091 0.909
26 H 0.108 0.892
27 H 0.107 0.893
28 H 0.098 0.902
29 H 0.163 0.837
30 H 0.098 0.902
31 H 0.101 0.899
32 H 0.229 0.771
33 H 0.121 0.879
34 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 9.786 -15.828 2.226 18.742
hybrid contribution 2.376 0.737 -0.587 2.556
sum 12.161 -15.091 1.639 19.450
Atomic orbital electron populations
1.70009 1.05971 1.27602 1.46681 1.24986 0.95014 0.99012 0.94476
0.86227 0.79249 0.81239 0.78807 1.19936 1.20794 1.19900 1.22807
0.94840 0.91591 1.59200 0.90967 1.85439 1.04891 0.96365 1.96706
1.23591 1.06538 0.95100 1.04752 1.20481 0.86327 0.86369 0.74992
1.90704 1.15266 1.85217 1.47289 1.47681 1.06359 1.05269 1.75793
1.22638 0.81148 1.03045 0.99375 1.21856 1.02371 0.91300 0.92431
1.56991 1.10510 1.05208 1.60360 1.22251 0.90641 0.99413 0.96451
1.22774 0.93531 0.86983 0.96144 0.92684 1.86502 1.45619 1.34627
1.69803 1.21448 1.00050 0.80630 0.98429 0.92099 0.89138 0.89206
0.90896 0.89158 0.89277 0.90202 0.83742 0.90223 0.89934 0.77084
0.87899 0.91492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16
2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16
3 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16
4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
7 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16
8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16
9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16
10 C -0.15 -3.00 4.64 36.01 0.17 -2.83 16
11 C 0.53 10.10 7.65 -10.98 -0.08 10.01 16
12 O -0.51 -11.84 15.16 5.56 0.08 -11.76 16
13 N -0.61 -8.62 2.19 -172.47 -0.38 -9.00 16
14 C 0.06 0.67 5.28 -3.97 -0.02 0.65 16
15 C 0.05 0.51 6.35 -5.74 -0.04 0.48 16
16 N -0.70 -6.28 6.25 -118.21 -0.74 -7.02 16
17 C 0.04 0.42 5.88 -5.18 -0.03 0.39 16
18 C 0.07 0.65 3.32 -27.31 -0.09 0.56 16
19 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16
20 O -0.56 -5.45 13.27 -35.23 -0.47 -5.92 16
21 C 0.12 1.54 5.81 -3.04 -0.02 1.52 16
22 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16
23 H 0.09 1.67 7.21 -51.92 -0.37 1.30 16
24 H 0.09 1.66 7.32 -51.91 -0.38 1.28 16
25 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16
26 H 0.09 0.96 6.24 -51.93 -0.32 0.63 16
27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16
28 H 0.08 0.99 7.34 -51.93 -0.38 0.61 16
29 H 0.34 2.32 8.10 -39.29 -0.32 2.00 16
30 H 0.08 0.68 7.90 -51.93 -0.41 0.27 16
31 H 0.08 1.10 7.33 -51.93 -0.38 0.72 16
32 H 0.38 1.90 8.94 45.56 0.41 2.31 16
33 H 0.10 1.65 6.98 -51.93 -0.36 1.29 16
34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
LS Contribution 290.80 15.07 4.38 4.38
Total: -1.00 -34.68 290.80 -7.26 -41.94
By element:
Atomic # 1 Polarization: 6.19 SS G_CDS: -3.72 Total: 2.47 kcal
Atomic # 6 Polarization: -2.15 SS G_CDS: 0.09 Total: -2.07 kcal
Atomic # 7 Polarization: -41.04 SS G_CDS: -0.38 Total: -41.42 kcal
Atomic # 8 Polarization: -17.30 SS G_CDS: -0.38 Total: -17.68 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal
Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -34.68 -7.26 -41.94 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700973436.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.186 kcal
(2) G-P(sol) polarization free energy of solvation -34.682 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds