Wall clock time and date at job start Mon Mar 30 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48505 * 109.46859 * 239.99854 * 3 2 1 5 5 H 1.48501 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47137 * 119.99854 * 3 2 1 7 7 C 1.38791 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00064 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47182 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99694 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99904 * 180.02562 * 11 10 9 14 14 C 1.44888 * 118.74852 * 0.02562 * 13 11 10 15 15 C 1.54771 * 109.68337 * 90.27667 * 14 13 11 16 16 N 1.41439 * 109.98568 * 69.73852 * 15 14 13 17 17 C 1.46192 * 116.35004 * 296.51658 * 16 15 14 18 18 C 1.51077 * 109.08630 * 87.00782 * 17 16 15 19 19 H 1.08997 * 109.45353 * 27.67506 * 18 17 16 20 20 O 1.42903 * 109.35781 * 147.52605 * 18 17 16 21 21 C 1.47613 * 118.74532 * 179.97438 * 13 11 10 22 22 H 0.97001 * 119.99831 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47529 * 60.00011 * 10 9 7 24 24 H 1.09004 * 109.47061 * 299.99958 * 10 9 7 25 25 H 1.08999 * 109.43398 * 210.33868 * 14 13 11 26 26 H 1.09003 * 109.43343 * 330.20716 * 14 13 11 27 27 H 1.09003 * 109.38487 * 189.90021 * 15 14 13 28 28 H 1.09000 * 109.38369 * 309.57899 * 15 14 13 29 29 H 1.00897 * 111.00020 * 64.72436 * 16 15 14 30 30 H 1.08996 * 109.54031 * 206.91347 * 17 16 15 31 31 H 1.08998 * 109.53378 * 327.07049 * 17 16 15 32 32 H 0.96692 * 114.00558 * 300.20556 * 20 18 17 33 33 H 1.09002 * 109.11401 * 342.15205 * 21 13 11 34 34 H 1.09000 * 109.11309 * 101.27213 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5022 0.0000 13 7 2.8443 -6.3430 0.0003 14 6 4.2678 -6.0734 0.0019 15 6 4.7798 -5.9840 1.4598 16 7 4.7459 -7.2627 2.0633 17 6 3.4264 -7.8734 2.2161 18 6 3.0825 -8.6287 0.9537 19 1 4.0002 -8.9584 0.4665 20 8 2.2854 -9.7675 1.2854 21 6 2.2965 -7.7138 0.0003 22 1 -0.4850 0.8401 -0.0004 23 1 3.1246 -3.7313 0.8905 24 1 3.1245 -3.7312 -0.8895 25 1 4.7898 -6.8773 -0.5171 26 1 4.4587 -5.1292 -0.5082 27 1 5.8037 -5.6101 1.4614 28 1 4.1459 -5.3004 2.0245 29 1 5.3863 -7.8950 1.6071 30 1 3.4389 -8.5617 3.0611 31 1 2.6829 -7.0957 2.3904 32 1 2.7187 -10.3897 1.8854 33 1 1.2536 -7.6814 0.3155 34 1 2.3514 -8.1200 -1.0097 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700973436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:43 Heat of formation + Delta-G solvation = -72.123950 kcal Electronic energy + Delta-G solvation = -17839.353158 eV Core-core repulsion = 14898.785903 eV Total energy + Delta-G solvation = -2940.567254 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.43620 -38.20970 -36.50383 -34.33558 -32.44261 -31.82048 -29.25077 -27.02359 -25.93690 -25.44323 -22.50045 -21.53061 -19.07030 -17.90691 -17.81816 -16.87089 -16.45859 -15.94004 -15.21785 -15.14456 -14.81533 -14.32796 -13.94828 -13.81342 -13.51601 -13.06133 -12.87737 -12.57550 -12.11894 -11.94025 -11.57589 -11.55701 -11.43236 -11.05536 -11.04649 -10.78427 -10.40677 -9.83441 -9.45792 -9.07538 -8.97464 -8.31128 -8.23631 -6.52475 -6.22715 -3.94059 2.71812 2.96784 3.22469 3.22720 3.28017 3.50846 3.86889 4.18244 4.21998 4.46095 4.55946 4.80375 4.82327 4.91751 4.98756 5.11940 5.13689 5.43223 5.44103 5.50474 5.61791 5.77999 5.82102 5.86454 5.90068 6.08667 6.51787 6.93552 7.15366 7.31884 7.42537 7.57747 8.33440 8.46709 9.22325 10.84658 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.038102 B = 0.004829 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.697702 B = 5797.317373 C = 6256.779186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.149 4.149 11 C 0.530 3.470 12 O -0.511 6.511 13 N -0.614 5.614 14 C 0.064 3.936 15 C 0.052 3.948 16 N -0.699 5.699 17 C 0.042 3.958 18 C 0.067 3.933 19 H 0.055 0.945 20 O -0.561 6.561 21 C 0.117 3.883 22 H 0.269 0.731 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.342 0.658 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.381 0.619 33 H 0.103 0.897 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.228 -16.194 2.038 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.300 4.300 11 C 0.318 3.682 12 O -0.385 6.385 13 N -0.351 5.351 14 C -0.062 4.062 15 C -0.080 4.080 16 N -0.331 5.331 17 C -0.088 4.088 18 C 0.006 3.994 19 H 0.073 0.927 20 O -0.366 6.366 21 C -0.006 4.006 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.163 0.837 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.229 0.771 33 H 0.121 0.879 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.786 -15.828 2.226 18.742 hybrid contribution 2.376 0.737 -0.587 2.556 sum 12.161 -15.091 1.639 19.450 Atomic orbital electron populations 1.70009 1.05971 1.27602 1.46681 1.24986 0.95014 0.99012 0.94476 0.86227 0.79249 0.81239 0.78807 1.19936 1.20794 1.19900 1.22807 0.94840 0.91591 1.59200 0.90967 1.85439 1.04891 0.96365 1.96706 1.23591 1.06538 0.95100 1.04752 1.20481 0.86327 0.86369 0.74992 1.90704 1.15266 1.85217 1.47289 1.47681 1.06359 1.05269 1.75793 1.22638 0.81148 1.03045 0.99375 1.21856 1.02371 0.91300 0.92431 1.56991 1.10510 1.05208 1.60360 1.22251 0.90641 0.99413 0.96451 1.22774 0.93531 0.86983 0.96144 0.92684 1.86502 1.45619 1.34627 1.69803 1.21448 1.00050 0.80630 0.98429 0.92099 0.89138 0.89206 0.90896 0.89158 0.89277 0.90202 0.83742 0.90223 0.89934 0.77084 0.87899 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.00 4.64 36.01 0.17 -2.83 16 11 C 0.53 10.10 7.65 -10.98 -0.08 10.01 16 12 O -0.51 -11.84 15.16 5.56 0.08 -11.76 16 13 N -0.61 -8.62 2.19 -172.47 -0.38 -9.00 16 14 C 0.06 0.67 5.28 -3.97 -0.02 0.65 16 15 C 0.05 0.51 6.35 -5.74 -0.04 0.48 16 16 N -0.70 -6.28 6.25 -118.21 -0.74 -7.02 16 17 C 0.04 0.42 5.88 -5.18 -0.03 0.39 16 18 C 0.07 0.65 3.32 -27.31 -0.09 0.56 16 19 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16 20 O -0.56 -5.45 13.27 -35.23 -0.47 -5.92 16 21 C 0.12 1.54 5.81 -3.04 -0.02 1.52 16 22 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 23 H 0.09 1.67 7.21 -51.92 -0.37 1.30 16 24 H 0.09 1.66 7.32 -51.91 -0.38 1.28 16 25 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 26 H 0.09 0.96 6.24 -51.93 -0.32 0.63 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.99 7.34 -51.93 -0.38 0.61 16 29 H 0.34 2.32 8.10 -39.29 -0.32 2.00 16 30 H 0.08 0.68 7.90 -51.93 -0.41 0.27 16 31 H 0.08 1.10 7.33 -51.93 -0.38 0.72 16 32 H 0.38 1.90 8.94 45.56 0.41 2.31 16 33 H 0.10 1.65 6.98 -51.93 -0.36 1.29 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 290.80 15.07 4.38 4.38 Total: -1.00 -34.68 290.80 -7.26 -41.94 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.72 Total: 2.47 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 0.09 Total: -2.07 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.38 Total: -41.42 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.38 Total: -17.68 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.68 -7.26 -41.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700973436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.186 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds