Wall clock time and date at job start Mon Mar 30 2020 04:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48505 * 109.46859 * 239.99854 * 3 2 1 5 5 H 1.48501 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47137 * 119.99854 * 3 2 1 7 7 C 1.38791 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00064 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47182 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99694 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99904 * 180.02562 * 11 10 9 14 14 C 1.44888 * 118.74852 * 0.02562 * 13 11 10 15 15 C 1.54771 * 109.68337 * 90.27667 * 14 13 11 16 16 N 1.41439 * 109.98568 * 69.73852 * 15 14 13 17 17 C 1.46192 * 116.35004 * 296.51658 * 16 15 14 18 18 C 1.51077 * 109.08630 * 87.00782 * 17 16 15 19 19 H 1.08997 * 109.45353 * 27.67506 * 18 17 16 20 20 O 1.42903 * 109.35781 * 147.52605 * 18 17 16 21 21 C 1.47613 * 118.74532 * 179.97438 * 13 11 10 22 22 H 0.97001 * 119.99831 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47529 * 60.00011 * 10 9 7 24 24 H 1.09004 * 109.47061 * 299.99958 * 10 9 7 25 25 H 1.08999 * 109.43398 * 210.33868 * 14 13 11 26 26 H 1.09003 * 109.43343 * 330.20716 * 14 13 11 27 27 H 1.09003 * 109.38487 * 189.90021 * 15 14 13 28 28 H 1.09000 * 109.38369 * 309.57899 * 15 14 13 29 29 H 1.00897 * 111.00020 * 64.72436 * 16 15 14 30 30 H 1.08996 * 109.54031 * 206.91347 * 17 16 15 31 31 H 1.08998 * 109.53378 * 327.07049 * 17 16 15 32 32 H 0.96692 * 114.00558 * 300.20556 * 20 18 17 33 33 H 1.09002 * 109.11401 * 342.15205 * 21 13 11 34 34 H 1.09000 * 109.11309 * 101.27213 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5022 0.0000 13 7 2.8443 -6.3430 0.0003 14 6 4.2678 -6.0734 0.0019 15 6 4.7798 -5.9840 1.4598 16 7 4.7459 -7.2627 2.0633 17 6 3.4264 -7.8734 2.2161 18 6 3.0825 -8.6287 0.9537 19 1 4.0002 -8.9584 0.4665 20 8 2.2854 -9.7675 1.2854 21 6 2.2965 -7.7138 0.0003 22 1 -0.4850 0.8401 -0.0004 23 1 3.1246 -3.7313 0.8905 24 1 3.1245 -3.7312 -0.8895 25 1 4.7898 -6.8773 -0.5171 26 1 4.4587 -5.1292 -0.5082 27 1 5.8037 -5.6101 1.4614 28 1 4.1459 -5.3004 2.0245 29 1 5.3863 -7.8950 1.6071 30 1 3.4389 -8.5617 3.0611 31 1 2.6829 -7.0957 2.3904 32 1 2.7187 -10.3897 1.8854 33 1 1.2536 -7.6814 0.3155 34 1 2.3514 -8.1200 -1.0097 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700973436.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:42 Heat of formation + Delta-G solvation = -101.518127 kcal Electronic energy + Delta-G solvation = -17840.627785 eV Core-core repulsion = 14898.785903 eV Total energy + Delta-G solvation = -2941.841882 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58762 -39.37386 -37.36893 -35.46148 -34.59121 -32.81871 -30.66177 -28.11008 -27.62606 -26.80668 -23.46769 -22.47859 -20.43226 -19.58094 -18.78036 -18.22405 -17.45083 -17.07904 -16.88574 -16.43437 -16.19798 -15.73922 -15.32465 -14.75652 -14.68949 -14.41236 -14.19016 -13.99457 -13.35393 -13.18143 -13.02273 -12.86743 -12.65202 -12.50560 -12.38245 -12.26855 -11.75826 -11.17238 -11.13151 -11.00642 -10.29150 -10.05165 -9.15019 -8.69949 -8.34954 -6.14469 1.20451 1.42153 1.44325 1.46995 1.54450 1.92334 2.26686 2.99387 3.10399 3.21151 3.45675 3.58558 3.73551 3.78634 4.02099 4.06197 4.10526 4.21096 4.33260 4.40780 4.52654 4.65071 4.74439 4.78298 4.99766 5.06492 5.40770 5.41442 6.12319 6.18689 6.19370 6.58141 6.82930 7.03389 7.06052 8.74201 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.038102 B = 0.004829 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.697702 B = 5797.317373 C = 6256.779186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.120 4.120 11 C 0.527 3.473 12 O -0.565 6.565 13 N -0.596 5.596 14 C 0.055 3.945 15 C 0.058 3.942 16 N -0.696 5.696 17 C 0.046 3.954 18 C 0.083 3.917 19 H 0.091 0.909 20 O -0.579 6.579 21 C 0.112 3.888 22 H 0.271 0.729 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.047 0.953 29 H 0.362 0.638 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.404 0.596 33 H 0.064 0.936 34 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.893 -17.028 1.990 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.271 4.271 11 C 0.315 3.685 12 O -0.444 6.444 13 N -0.331 5.331 14 C -0.069 4.069 15 C -0.074 4.074 16 N -0.330 5.330 17 C -0.083 4.083 18 C 0.021 3.979 19 H 0.108 0.892 20 O -0.387 6.387 21 C -0.011 4.011 22 H 0.080 0.920 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.110 0.890 27 H 0.136 0.864 28 H 0.066 0.934 29 H 0.185 0.815 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.255 0.745 33 H 0.082 0.918 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.527 -16.725 2.190 21.622 hybrid contribution 1.288 0.823 -0.552 1.625 sum 14.815 -15.902 1.637 21.795 Atomic orbital electron populations 1.70188 1.08082 1.28702 1.47946 1.26145 0.95934 1.03371 0.93626 0.84992 0.77794 0.75540 0.79598 1.18498 1.20503 1.18531 1.23153 0.95364 0.91719 1.59054 0.89693 1.85659 1.10704 0.99495 1.97047 1.23384 1.03361 0.93826 1.06489 1.20352 0.86094 0.87033 0.75045 1.90685 1.17560 1.85855 1.50269 1.47617 1.07434 1.04585 1.73438 1.23027 0.78703 1.04639 1.00557 1.21807 1.03159 0.91266 0.91144 1.56947 1.10136 1.05287 1.60598 1.22180 0.90193 0.98510 0.97450 1.22598 0.93683 0.86405 0.95194 0.89180 1.86460 1.46653 1.34973 1.70649 1.21574 0.98782 0.80589 1.00168 0.91996 0.87368 0.87113 0.87234 0.88977 0.86404 0.93398 0.81527 0.88447 0.94092 0.74485 0.91763 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.46 13.22 21.65 0.29 -56.17 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.35 29.55 68.60 2.03 45.37 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 7 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.16 -8.81 20.57 -56.49 -1.16 -9.97 16 10 C -0.12 -4.82 4.64 71.24 0.33 -4.49 16 11 C 0.53 20.51 7.65 87.66 0.67 21.18 16 12 O -0.57 -27.73 15.16 -3.03 -0.05 -27.78 16 13 N -0.60 -16.19 2.19 -817.96 -1.79 -17.98 16 14 C 0.06 0.98 5.28 87.29 0.46 1.44 16 15 C 0.06 0.97 6.35 87.90 0.56 1.53 16 16 N -0.70 -10.15 6.25 -527.90 -3.30 -13.46 16 17 C 0.05 0.83 5.88 85.81 0.50 1.34 16 18 C 0.08 1.38 3.32 30.22 0.10 1.48 16 19 H 0.09 0.95 7.47 -2.39 -0.02 0.94 16 20 O -0.58 -9.99 13.27 -148.98 -1.98 -11.97 16 21 C 0.11 2.83 5.81 86.42 0.50 3.34 16 22 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 23 H 0.11 3.96 7.21 -2.39 -0.02 3.94 16 24 H 0.11 3.98 7.32 -2.39 -0.02 3.96 16 25 H 0.11 1.23 8.11 -2.39 -0.02 1.22 16 26 H 0.09 1.65 6.24 -2.39 -0.01 1.64 16 27 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.13 7.34 -2.39 -0.02 1.11 16 29 H 0.36 3.08 8.10 -89.70 -0.73 2.36 16 30 H 0.10 1.42 7.90 -2.39 -0.02 1.40 16 31 H 0.04 1.10 7.33 -2.39 -0.02 1.08 16 32 H 0.40 2.78 8.94 -74.06 -0.66 2.12 16 33 H 0.06 2.17 6.98 -2.39 -0.02 2.15 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -80.15 290.80 -1.98 -82.13 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -0.26 Total: 13.19 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.24 Total: -3.38 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -4.80 Total: -87.60 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -2.02 Total: -39.75 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -80.15 -1.98 -82.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700973436.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.388 kcal (2) G-P(sol) polarization free energy of solvation -80.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds