Wall clock time and date at job start Mon Mar 30 2020 04:10:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31633 * 1
3 3 Si 1.86805 * 119.99775 * 2 1
4 4 H 1.48505 * 109.46859 * 239.99854 * 3 2 1
5 5 H 1.48501 * 109.47280 * 359.97438 * 3 2 1
6 6 H 1.48493 * 109.47137 * 119.99854 * 3 2 1
7 7 C 1.38791 * 120.00208 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99969 * 180.02562 * 7 2 1
9 9 S 1.76199 * 119.99909 * 0.02562 * 7 2 1
10 10 C 1.81001 * 100.00064 * 179.97438 * 9 7 2
11 11 C 1.50705 * 109.47182 * 180.02562 * 10 9 7
12 12 O 1.21280 * 119.99694 * 359.97438 * 11 10 9
13 13 N 1.34776 * 119.99904 * 180.02562 * 11 10 9
14 14 C 1.44888 * 118.74852 * 0.02562 * 13 11 10
15 15 C 1.54771 * 109.68337 * 90.27667 * 14 13 11
16 16 N 1.41439 * 109.98568 * 69.73852 * 15 14 13
17 17 C 1.46192 * 116.35004 * 296.51658 * 16 15 14
18 18 C 1.51077 * 109.08630 * 87.00782 * 17 16 15
19 19 H 1.08997 * 109.45353 * 27.67506 * 18 17 16
20 20 O 1.42903 * 109.35781 * 147.52605 * 18 17 16
21 21 C 1.47613 * 118.74532 * 179.97438 * 13 11 10
22 22 H 0.97001 * 119.99831 * 0.02562 * 1 2 3
23 23 H 1.09000 * 109.47529 * 60.00011 * 10 9 7
24 24 H 1.09004 * 109.47061 * 299.99958 * 10 9 7
25 25 H 1.08999 * 109.43398 * 210.33868 * 14 13 11
26 26 H 1.09003 * 109.43343 * 330.20716 * 14 13 11
27 27 H 1.09003 * 109.38487 * 189.90021 * 15 14 13
28 28 H 1.09000 * 109.38369 * 309.57899 * 15 14 13
29 29 H 1.00897 * 111.00020 * 64.72436 * 16 15 14
30 30 H 1.08996 * 109.54031 * 206.91347 * 17 16 15
31 31 H 1.08998 * 109.53378 * 327.07049 * 17 16 15
32 32 H 0.96692 * 114.00558 * 300.20556 * 20 18 17
33 33 H 1.09002 * 109.11401 * 342.15205 * 21 13 11
34 34 H 1.09000 * 109.11309 * 101.27213 * 21 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 3.1041 1.6964 -1.2125
5 1 1.2853 2.7465 -0.0006
6 1 3.1040 1.6965 1.2125
7 6 2.0103 -1.2019 0.0005
8 1 3.0903 -1.2019 0.0010
9 16 1.1294 -2.7279 0.0005
10 6 2.5159 -3.8913 0.0005
11 6 1.9875 -5.3027 -0.0001
12 8 0.7912 -5.5022 0.0000
13 7 2.8443 -6.3430 0.0003
14 6 4.2678 -6.0734 0.0019
15 6 4.7798 -5.9840 1.4598
16 7 4.7459 -7.2627 2.0633
17 6 3.4264 -7.8734 2.2161
18 6 3.0825 -8.6287 0.9537
19 1 4.0002 -8.9584 0.4665
20 8 2.2854 -9.7675 1.2854
21 6 2.2965 -7.7138 0.0003
22 1 -0.4850 0.8401 -0.0004
23 1 3.1246 -3.7313 0.8905
24 1 3.1245 -3.7312 -0.8895
25 1 4.7898 -6.8773 -0.5171
26 1 4.4587 -5.1292 -0.5082
27 1 5.8037 -5.6101 1.4614
28 1 4.1459 -5.3004 2.0245
29 1 5.3863 -7.8950 1.6071
30 1 3.4389 -8.5617 3.0611
31 1 2.6829 -7.0957 2.3904
32 1 2.7187 -10.3897 1.8854
33 1 1.2536 -7.6814 0.3155
34 1 2.3514 -8.1200 -1.0097
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000700973436.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:10:42
Heat of formation + Delta-G solvation = -101.518127 kcal
Electronic energy + Delta-G solvation = -17840.627785 eV
Core-core repulsion = 14898.785903 eV
Total energy + Delta-G solvation = -2941.841882 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 260.098 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.58762 -39.37386 -37.36893 -35.46148 -34.59121 -32.81871 -30.66177 -28.11008
-27.62606 -26.80668 -23.46769 -22.47859 -20.43226 -19.58094 -18.78036 -18.22405
-17.45083 -17.07904 -16.88574 -16.43437 -16.19798 -15.73922 -15.32465 -14.75652
-14.68949 -14.41236 -14.19016 -13.99457 -13.35393 -13.18143 -13.02273 -12.86743
-12.65202 -12.50560 -12.38245 -12.26855 -11.75826 -11.17238 -11.13151 -11.00642
-10.29150 -10.05165 -9.15019 -8.69949 -8.34954 -6.14469 1.20451 1.42153
1.44325 1.46995 1.54450 1.92334 2.26686 2.99387 3.10399 3.21151
3.45675 3.58558 3.73551 3.78634 4.02099 4.06197 4.10526 4.21096
4.33260 4.40780 4.52654 4.65071 4.74439 4.78298 4.99766 5.06492
5.40770 5.41442 6.12319 6.18689 6.19370 6.58141 6.82930 7.03389
7.06052 8.74201
Molecular weight = 260.10amu
Principal moments of inertia in cm(-1)
A = 0.038102 B = 0.004829 C = 0.004474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 734.697702 B = 5797.317373 C = 6256.779186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C 0.014 3.986
3 Si 0.999 3.001
4 H -0.260 1.260
5 H -0.280 1.280
6 H -0.261 1.261
7 C -0.545 4.545
8 H 0.085 0.915
9 S -0.156 6.156
10 C -0.120 4.120
11 C 0.527 3.473
12 O -0.565 6.565
13 N -0.596 5.596
14 C 0.055 3.945
15 C 0.058 3.942
16 N -0.696 5.696
17 C 0.046 3.954
18 C 0.083 3.917
19 H 0.091 0.909
20 O -0.579 6.579
21 C 0.112 3.888
22 H 0.271 0.729
23 H 0.108 0.892
24 H 0.111 0.889
25 H 0.110 0.890
26 H 0.092 0.908
27 H 0.118 0.882
28 H 0.047 0.953
29 H 0.362 0.638
30 H 0.097 0.903
31 H 0.040 0.960
32 H 0.404 0.596
33 H 0.064 0.936
34 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.893 -17.028 1.990 23.377
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.191 4.191
3 Si 0.821 3.179
4 H -0.185 1.185
5 H -0.205 1.205
6 H -0.185 1.185
7 C -0.693 4.693
8 H 0.103 0.897
9 S 0.071 5.929
10 C -0.271 4.271
11 C 0.315 3.685
12 O -0.444 6.444
13 N -0.331 5.331
14 C -0.069 4.069
15 C -0.074 4.074
16 N -0.330 5.330
17 C -0.083 4.083
18 C 0.021 3.979
19 H 0.108 0.892
20 O -0.387 6.387
21 C -0.011 4.011
22 H 0.080 0.920
23 H 0.126 0.874
24 H 0.129 0.871
25 H 0.128 0.872
26 H 0.110 0.890
27 H 0.136 0.864
28 H 0.066 0.934
29 H 0.185 0.815
30 H 0.116 0.884
31 H 0.059 0.941
32 H 0.255 0.745
33 H 0.082 0.918
34 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 13.527 -16.725 2.190 21.622
hybrid contribution 1.288 0.823 -0.552 1.625
sum 14.815 -15.902 1.637 21.795
Atomic orbital electron populations
1.70188 1.08082 1.28702 1.47946 1.26145 0.95934 1.03371 0.93626
0.84992 0.77794 0.75540 0.79598 1.18498 1.20503 1.18531 1.23153
0.95364 0.91719 1.59054 0.89693 1.85659 1.10704 0.99495 1.97047
1.23384 1.03361 0.93826 1.06489 1.20352 0.86094 0.87033 0.75045
1.90685 1.17560 1.85855 1.50269 1.47617 1.07434 1.04585 1.73438
1.23027 0.78703 1.04639 1.00557 1.21807 1.03159 0.91266 0.91144
1.56947 1.10136 1.05287 1.60598 1.22180 0.90193 0.98510 0.97450
1.22598 0.93683 0.86405 0.95194 0.89180 1.86460 1.46653 1.34973
1.70649 1.21574 0.98782 0.80589 1.00168 0.91996 0.87368 0.87113
0.87234 0.88977 0.86404 0.93398 0.81527 0.88447 0.94092 0.74485
0.91763 0.90319
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.46 13.22 21.65 0.29 -56.17 16
2 C 0.01 0.79 5.49 84.86 0.47 1.26 16
3 Si 1.00 43.35 29.55 68.60 2.03 45.37 16
4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16
5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16
6 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16
7 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16
8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16
9 S -0.16 -8.81 20.57 -56.49 -1.16 -9.97 16
10 C -0.12 -4.82 4.64 71.24 0.33 -4.49 16
11 C 0.53 20.51 7.65 87.66 0.67 21.18 16
12 O -0.57 -27.73 15.16 -3.03 -0.05 -27.78 16
13 N -0.60 -16.19 2.19 -817.96 -1.79 -17.98 16
14 C 0.06 0.98 5.28 87.29 0.46 1.44 16
15 C 0.06 0.97 6.35 87.90 0.56 1.53 16
16 N -0.70 -10.15 6.25 -527.90 -3.30 -13.46 16
17 C 0.05 0.83 5.88 85.81 0.50 1.34 16
18 C 0.08 1.38 3.32 30.22 0.10 1.48 16
19 H 0.09 0.95 7.47 -2.39 -0.02 0.94 16
20 O -0.58 -9.99 13.27 -148.98 -1.98 -11.97 16
21 C 0.11 2.83 5.81 86.42 0.50 3.34 16
22 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16
23 H 0.11 3.96 7.21 -2.39 -0.02 3.94 16
24 H 0.11 3.98 7.32 -2.39 -0.02 3.96 16
25 H 0.11 1.23 8.11 -2.39 -0.02 1.22 16
26 H 0.09 1.65 6.24 -2.39 -0.01 1.64 16
27 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16
28 H 0.05 1.13 7.34 -2.39 -0.02 1.11 16
29 H 0.36 3.08 8.10 -89.70 -0.73 2.36 16
30 H 0.10 1.42 7.90 -2.39 -0.02 1.40 16
31 H 0.04 1.10 7.33 -2.39 -0.02 1.08 16
32 H 0.40 2.78 8.94 -74.06 -0.66 2.12 16
33 H 0.06 2.17 6.98 -2.39 -0.02 2.15 16
34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
Total: -1.00 -80.15 290.80 -1.98 -82.13
By element:
Atomic # 1 Polarization: 13.45 SS G_CDS: -0.26 Total: 13.19 kcal
Atomic # 6 Polarization: -7.62 SS G_CDS: 4.24 Total: -3.38 kcal
Atomic # 7 Polarization: -82.80 SS G_CDS: -4.80 Total: -87.60 kcal
Atomic # 8 Polarization: -37.72 SS G_CDS: -2.02 Total: -39.75 kcal
Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal
Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal
Total: -80.15 -1.98 -82.13 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700973436.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.388 kcal
(2) G-P(sol) polarization free energy of solvation -80.150 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.538 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.980 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.130 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.518 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds