Wall clock time and date at job start Mon Mar 30 2020 04:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48494 * 109.46926 * 270.00088 * 3 2 1 5 5 H 1.48496 * 109.47078 * 30.00340 * 3 2 1 6 6 H 1.48503 * 109.47032 * 149.99950 * 3 2 1 7 7 C 1.38794 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99975 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00266 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00035 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47075 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00111 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00157 * 179.97438 * 11 10 9 14 14 C 1.47778 * 118.54450 * 0.02562 * 13 11 10 15 15 C 1.54032 * 111.55422 * 138.11282 * 14 13 11 16 16 N 1.44767 * 109.67985 * 319.99771 * 15 14 13 17 17 C 1.46261 * 110.64379 * 94.16623 * 16 15 14 18 18 C 1.47544 * 114.37230 * 272.25462 * 17 16 15 19 19 H 1.09002 * 109.42488 * 302.13337 * 18 17 16 20 20 O 1.42898 * 109.42589 * 182.24162 * 18 17 16 21 21 C 1.44672 * 118.54853 * 179.97438 * 13 11 10 22 22 H 0.96994 * 120.00013 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47122 * 60.00229 * 10 9 7 24 24 H 1.09005 * 109.47312 * 300.00697 * 10 9 7 25 25 H 1.09003 * 109.06461 * 17.57357 * 14 13 11 26 26 H 1.09000 * 109.06114 * 258.64323 * 14 13 11 27 27 H 1.09009 * 109.43509 * 199.93765 * 15 14 13 28 28 H 1.08994 * 109.40354 * 80.04598 * 15 14 13 29 29 H 1.00899 * 111.00125 * 330.46453 * 16 15 14 30 30 H 1.08996 * 108.50597 * 150.98425 * 17 16 15 31 31 H 1.09010 * 108.50132 * 33.51512 * 17 16 15 32 32 H 0.96697 * 114.00528 * 59.89327 * 20 18 17 33 33 H 1.09003 * 109.45947 * 149.06672 * 21 13 11 34 34 H 1.08994 * 109.46566 * 29.10222 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 6 4.2953 -6.0630 -0.0013 15 6 5.0528 -7.0037 0.9547 16 7 4.2821 -7.1922 2.1655 17 6 3.4551 -8.3946 2.0684 18 6 2.1304 -8.1747 1.4570 19 1 1.5870 -7.4233 2.0299 20 8 1.3952 -9.4000 1.4623 21 6 2.3028 -7.6847 -0.0018 22 1 -0.4850 0.8400 -0.0004 23 1 3.1245 -3.7314 0.8895 24 1 3.1246 -3.7313 -0.8905 25 1 4.4586 -5.0314 0.3106 26 1 4.6834 -6.1940 -1.0114 27 1 6.0193 -6.5656 1.2044 28 1 5.2062 -7.9671 0.4686 29 1 3.7175 -6.3801 2.3649 30 1 3.3108 -8.7972 3.0710 31 1 3.9909 -9.1361 1.4756 32 1 1.2467 -9.7659 2.3450 33 1 2.9841 -8.3513 -0.5306 34 1 1.3339 -7.6853 -0.5012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700973437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:45 Heat of formation + Delta-G solvation = -72.316950 kcal Electronic energy + Delta-G solvation = -17834.068573 eV Core-core repulsion = 14893.492950 eV Total energy + Delta-G solvation = -2940.575624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.48821 -38.20031 -36.45806 -34.24192 -32.46335 -31.78435 -29.59182 -27.01286 -25.84034 -25.39881 -22.30994 -21.83825 -19.07043 -17.97671 -17.77773 -16.79785 -16.12117 -15.96400 -15.57869 -14.83630 -14.79435 -14.54276 -13.96484 -13.86692 -13.52313 -12.96065 -12.67837 -12.56414 -12.36640 -12.05759 -11.87968 -11.43324 -11.25190 -11.08982 -11.05558 -10.78068 -10.32576 -9.84537 -9.51787 -9.09987 -8.80782 -8.65135 -8.27657 -6.55187 -6.25033 -3.96538 2.70864 2.89369 3.20151 3.21050 3.27731 3.46951 3.97541 4.16412 4.20603 4.49574 4.60351 4.66444 4.77451 4.98122 5.08406 5.10342 5.22426 5.32999 5.44269 5.47791 5.58755 5.61310 5.75282 5.80966 5.86867 6.02770 6.56304 6.70909 7.04105 7.30793 7.40548 7.56030 8.31503 8.41271 9.20297 10.82413 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.035661 B = 0.004858 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.991908 B = 5761.735606 C = 6219.700893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.527 3.473 12 O -0.507 6.507 13 N -0.618 5.618 14 C 0.068 3.932 15 C 0.043 3.957 16 N -0.667 5.667 17 C 0.023 3.977 18 C 0.060 3.940 19 H 0.061 0.939 20 O -0.561 6.561 21 C 0.125 3.875 22 H 0.269 0.731 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.349 0.651 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.380 0.620 33 H 0.077 0.923 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.535 -15.473 2.637 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.315 3.685 12 O -0.380 6.380 13 N -0.355 5.355 14 C -0.056 4.056 15 C -0.088 4.088 16 N -0.298 5.298 17 C -0.107 4.107 18 C -0.002 4.002 19 H 0.079 0.921 20 O -0.364 6.364 21 C 0.000 4.000 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.227 0.773 33 H 0.095 0.905 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.106 -15.917 2.329 18.485 hybrid contribution 1.353 1.487 -0.030 2.011 sum 10.459 -14.429 2.300 17.969 Atomic orbital electron populations 1.70016 1.05979 1.27527 1.46734 1.24991 0.95020 0.99049 0.94450 0.86162 0.79416 0.81523 0.78378 1.20246 1.20723 1.19655 1.22848 0.94872 0.91560 1.59144 0.90909 1.85443 1.04805 0.96409 1.96708 1.23590 1.06616 0.95245 1.04766 1.20536 0.86362 0.86506 0.75062 1.90723 1.15136 1.85239 1.46859 1.47756 1.06369 1.05506 1.75901 1.22854 0.79753 1.01798 1.01206 1.22425 0.97605 0.99686 0.89076 1.60372 1.28317 1.06710 1.34412 1.21751 0.93498 0.93957 1.01515 1.22207 0.92526 0.87065 0.98447 0.92131 1.86474 1.76701 1.39135 1.34135 1.21106 1.01467 0.82775 0.94606 0.92133 0.89140 0.89146 0.88713 0.91030 0.89035 0.90995 0.83151 0.90999 0.90792 0.77284 0.90492 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -2.98 4.48 36.00 0.16 -2.81 16 11 C 0.53 9.73 7.64 -10.99 -0.08 9.64 16 12 O -0.51 -11.42 15.26 5.56 0.08 -11.34 16 13 N -0.62 -8.39 2.27 -172.28 -0.39 -8.78 16 14 C 0.07 0.69 6.01 -2.80 -0.02 0.67 16 15 C 0.04 0.36 6.39 -4.43 -0.03 0.33 16 16 N -0.67 -6.65 6.78 -118.18 -0.80 -7.46 16 17 C 0.02 0.22 5.36 -6.80 -0.04 0.18 16 18 C 0.06 0.69 3.43 -28.39 -0.10 0.59 16 19 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 20 O -0.56 -6.20 13.30 -35.23 -0.47 -6.66 16 21 C 0.12 1.61 5.10 -4.04 -0.02 1.59 16 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.09 1.61 7.40 -51.92 -0.38 1.23 16 24 H 0.09 1.65 8.03 -51.91 -0.42 1.23 16 25 H 0.09 0.99 5.83 -51.93 -0.30 0.68 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 28 H 0.07 0.55 7.14 -51.93 -0.37 0.18 16 29 H 0.35 3.95 7.86 -39.29 -0.31 3.65 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.66 7.18 -51.92 -0.37 0.29 16 32 H 0.38 2.53 9.06 45.56 0.41 2.94 16 33 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.10 1.49 7.24 -51.93 -0.38 1.12 16 LS Contribution 292.20 15.07 4.40 4.40 Total: -1.00 -33.97 292.20 -7.37 -41.34 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.77 Total: 3.97 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 0.08 Total: -2.53 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -0.46 Total: -41.47 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.38 Total: -18.00 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.97 -7.37 -41.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700973437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.976 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds