Wall clock time and date at job start Mon Mar 30 2020 04:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86799 * 119.99766 * 2 1 4 4 H 1.48494 * 109.46926 * 270.00088 * 3 2 1 5 5 H 1.48496 * 109.47078 * 30.00340 * 3 2 1 6 6 H 1.48503 * 109.47032 * 149.99950 * 3 2 1 7 7 C 1.38794 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99975 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00266 * 359.97438 * 7 2 1 10 10 C 1.81001 * 100.00035 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47075 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00111 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00157 * 179.97438 * 11 10 9 14 14 C 1.47778 * 118.54450 * 0.02562 * 13 11 10 15 15 C 1.54032 * 111.55422 * 138.11282 * 14 13 11 16 16 N 1.44767 * 109.67985 * 319.99771 * 15 14 13 17 17 C 1.46261 * 110.64379 * 94.16623 * 16 15 14 18 18 C 1.47544 * 114.37230 * 272.25462 * 17 16 15 19 19 H 1.09002 * 109.42488 * 302.13337 * 18 17 16 20 20 O 1.42898 * 109.42589 * 182.24162 * 18 17 16 21 21 C 1.44672 * 118.54853 * 179.97438 * 13 11 10 22 22 H 0.96994 * 120.00013 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47122 * 60.00229 * 10 9 7 24 24 H 1.09005 * 109.47312 * 300.00697 * 10 9 7 25 25 H 1.09003 * 109.06461 * 17.57357 * 14 13 11 26 26 H 1.09000 * 109.06114 * 258.64323 * 14 13 11 27 27 H 1.09009 * 109.43509 * 199.93765 * 15 14 13 28 28 H 1.08994 * 109.40354 * 80.04598 * 15 14 13 29 29 H 1.00899 * 111.00125 * 330.46453 * 16 15 14 30 30 H 1.08996 * 108.50597 * 150.98425 * 17 16 15 31 31 H 1.09010 * 108.50132 * 33.51512 * 17 16 15 32 32 H 0.96697 * 114.00528 * 59.89327 * 20 18 17 33 33 H 1.09003 * 109.45947 * 149.06672 * 21 13 11 34 34 H 1.08994 * 109.46566 * 29.10222 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3431 -0.0018 14 6 4.2953 -6.0630 -0.0013 15 6 5.0528 -7.0037 0.9547 16 7 4.2821 -7.1922 2.1655 17 6 3.4551 -8.3946 2.0684 18 6 2.1304 -8.1747 1.4570 19 1 1.5870 -7.4233 2.0299 20 8 1.3952 -9.4000 1.4623 21 6 2.3028 -7.6847 -0.0018 22 1 -0.4850 0.8400 -0.0004 23 1 3.1245 -3.7314 0.8895 24 1 3.1246 -3.7313 -0.8905 25 1 4.4586 -5.0314 0.3106 26 1 4.6834 -6.1940 -1.0114 27 1 6.0193 -6.5656 1.2044 28 1 5.2062 -7.9671 0.4686 29 1 3.7175 -6.3801 2.3649 30 1 3.3108 -8.7972 3.0710 31 1 3.9909 -9.1361 1.4756 32 1 1.2467 -9.7659 2.3450 33 1 2.9841 -8.3513 -0.5306 34 1 1.3339 -7.6853 -0.5012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700973437.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:45 Heat of formation + Delta-G solvation = -100.955828 kcal Electronic energy + Delta-G solvation = -17835.310448 eV Core-core repulsion = 14893.492950 eV Total energy + Delta-G solvation = -2941.817498 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.63269 -39.36846 -37.38768 -35.34109 -34.59050 -32.77234 -30.95734 -28.08874 -27.62736 -26.64291 -23.31121 -22.69744 -20.47170 -19.50843 -18.89936 -18.24147 -17.24455 -16.88915 -16.80259 -16.76118 -16.01793 -15.76902 -15.41863 -14.98885 -14.53698 -14.40014 -14.08797 -13.70382 -13.41942 -13.17163 -13.08402 -12.91420 -12.89602 -12.60080 -12.37543 -12.00144 -11.70670 -11.23808 -11.14783 -11.00418 -10.27809 -9.92243 -9.46683 -8.69410 -8.35325 -6.14276 1.21726 1.42105 1.43275 1.44866 1.55517 1.91558 2.26418 2.99328 3.10836 3.23357 3.36886 3.54700 3.77126 3.79944 3.86436 4.12828 4.17194 4.26035 4.36108 4.42572 4.56531 4.63218 4.71406 4.79312 4.96356 5.00258 5.41264 5.48148 6.00041 6.05094 6.19265 6.22349 6.73330 7.02213 7.06183 8.74005 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.035661 B = 0.004858 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.991908 B = 5761.735606 C = 6219.700893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.155 6.155 10 C -0.123 4.123 11 C 0.527 3.473 12 O -0.559 6.559 13 N -0.600 5.600 14 C 0.061 3.939 15 C 0.048 3.952 16 N -0.672 5.672 17 C 0.029 3.971 18 C 0.071 3.929 19 H 0.030 0.970 20 O -0.573 6.573 21 C 0.121 3.879 22 H 0.271 0.729 23 H 0.112 0.888 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.088 0.912 29 H 0.339 0.661 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.399 0.601 33 H 0.107 0.893 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.796 -16.082 2.802 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.073 5.927 10 C -0.274 4.274 11 C 0.315 3.685 12 O -0.437 6.437 13 N -0.335 5.335 14 C -0.061 4.061 15 C -0.083 4.083 16 N -0.302 5.302 17 C -0.101 4.101 18 C 0.008 3.992 19 H 0.048 0.952 20 O -0.379 6.379 21 C -0.003 4.003 22 H 0.080 0.920 23 H 0.130 0.870 24 H 0.127 0.873 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.129 0.871 28 H 0.106 0.894 29 H 0.158 0.842 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.249 0.751 33 H 0.125 0.875 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.426 -16.577 2.509 20.868 hybrid contribution 0.384 1.509 -0.081 1.559 sum 12.810 -15.067 2.428 19.925 Atomic orbital electron populations 1.70188 1.08060 1.28633 1.48048 1.26130 0.95921 1.03348 0.93671 0.84948 0.78266 0.75953 0.78793 1.19341 1.20427 1.17968 1.23191 0.95366 0.91781 1.58879 0.89711 1.85657 1.10602 0.99429 1.97043 1.23400 1.03438 0.93944 1.06612 1.20365 0.86083 0.87039 0.75028 1.90707 1.17401 1.85835 1.49747 1.47684 1.07476 1.04625 1.73710 1.23189 0.77262 1.02431 1.03262 1.22530 0.97587 1.00156 0.87990 1.60436 1.28130 1.06393 1.35242 1.21706 0.92050 0.94124 1.02181 1.22010 0.93601 0.86585 0.96965 0.95192 1.86430 1.76813 1.38641 1.36064 1.21216 1.00606 0.82637 0.95829 0.92006 0.86960 0.87262 0.88811 0.88773 0.87120 0.89397 0.84209 0.89888 0.89307 0.75066 0.87524 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.54 -30.65 9.50 67.95 0.65 -30.00 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 10 C -0.12 -4.77 4.48 71.23 0.32 -4.45 16 11 C 0.53 19.55 7.64 87.65 0.67 20.22 16 12 O -0.56 -26.39 15.26 -3.04 -0.05 -26.44 16 13 N -0.60 -15.49 2.27 -817.35 -1.86 -17.35 16 14 C 0.06 1.04 6.01 86.48 0.52 1.56 16 15 C 0.05 0.62 6.39 87.05 0.56 1.17 16 16 N -0.67 -11.49 6.78 -527.80 -3.58 -15.07 16 17 C 0.03 0.48 5.36 84.72 0.45 0.93 16 18 C 0.07 1.57 3.43 29.52 0.10 1.67 16 19 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 20 O -0.57 -12.00 13.30 -148.98 -1.98 -13.98 16 21 C 0.12 3.01 5.10 87.35 0.45 3.46 16 22 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 23 H 0.11 3.85 7.40 -2.39 -0.02 3.84 16 24 H 0.11 3.82 8.03 -2.39 -0.02 3.80 16 25 H 0.09 1.65 5.83 -2.39 -0.01 1.64 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.09 0.91 7.14 -2.39 -0.02 0.90 16 29 H 0.34 7.06 7.86 -89.69 -0.70 6.36 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.23 7.18 -2.38 -0.02 1.22 16 32 H 0.40 4.74 9.06 -74.06 -0.67 4.07 16 33 H 0.11 2.03 8.09 -2.39 -0.02 2.01 16 34 H 0.06 1.99 7.24 -2.39 -0.02 1.98 16 Total: -1.00 -76.79 292.20 -2.38 -79.18 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.25 Total: 18.13 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 4.18 Total: -4.18 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -5.15 Total: -88.08 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -2.03 Total: -40.42 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -76.79 -2.38 -79.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700973437.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.781 kcal (2) G-P(sol) polarization free energy of solvation -76.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds