Wall clock time and date at job start Mon Mar 30 2020 04:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48493 * 109.47251 * 239.99564 * 3 2 1 5 5 H 1.48499 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47069 * 119.99655 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 N 1.46908 * 110.45835 * 307.60426 * 15 14 13 17 17 C 1.54504 * 110.51327 * 185.00006 * 15 14 13 18 18 C 1.54483 * 104.06277 * 241.35225 * 17 15 14 19 19 O 1.44422 * 104.80149 * 23.98211 * 18 17 15 20 20 C 1.44427 * 105.27580 * 319.48527 * 19 18 17 21 21 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 23 23 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 24 24 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 25 25 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 26 26 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 27 27 H 1.00897 * 110.99860 * 59.29571 * 16 15 14 28 28 H 1.00894 * 111.00021 * 183.24631 * 16 15 14 29 29 H 1.09002 * 110.51302 * 359.97438 * 17 15 14 30 30 H 1.09000 * 110.51266 * 122.57630 * 17 15 14 31 31 H 1.09006 * 110.36999 * 142.80296 * 18 17 15 32 32 H 1.08994 * 110.37314 * 265.03727 * 18 17 15 33 33 H 1.09007 * 110.36858 * 281.68561 * 20 19 18 34 34 H 1.08993 * 110.37729 * 159.34836 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3028 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3305 -7.7151 0.0034 15 6 3.5025 -8.6985 0.0046 16 7 4.4365 -8.3856 -1.0853 17 6 2.9907 -10.1509 -0.1213 18 6 3.4684 -10.8314 1.1807 19 8 3.6324 -9.7499 2.1236 20 6 4.2288 -8.6733 1.3678 21 1 -0.4850 0.8400 -0.0004 22 1 3.1238 -3.7310 0.8925 23 1 3.1252 -3.7318 -0.8874 24 1 3.8010 -6.1835 0.0043 25 1 1.7209 -7.8747 0.8928 26 1 1.7228 -7.8757 -0.8871 27 1 4.7993 -7.4487 -0.9927 28 1 5.1851 -9.0609 -1.1250 29 1 1.9026 -10.1684 -0.1840 30 1 3.4307 -10.6368 -0.9922 31 1 2.7173 -11.5358 1.5383 32 1 4.4177 -11.3410 1.0163 33 1 5.2959 -8.8504 1.2326 34 1 4.0621 -7.7199 1.8690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701024532.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:14 Heat of formation + Delta-G solvation = -81.418163 kcal Electronic energy + Delta-G solvation = -17168.312668 eV Core-core repulsion = 14227.342386 eV Total energy + Delta-G solvation = -2940.970282 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.44217 -38.87942 -35.79083 -33.32441 -32.42401 -30.66085 -29.84660 -28.17327 -25.82123 -25.34809 -23.02483 -20.39953 -20.19250 -17.99720 -17.07193 -16.76970 -16.08388 -15.93195 -15.55488 -15.42320 -14.96368 -14.80093 -14.01806 -13.86024 -13.37607 -12.99249 -12.74138 -12.61395 -12.57849 -12.00954 -11.70550 -11.56436 -11.31263 -11.04224 -11.03525 -10.76259 -10.21387 -9.82316 -9.42417 -9.15925 -9.06005 -8.90426 -8.23578 -6.49539 -6.21022 -3.91792 3.00464 3.09681 3.23801 3.27533 3.30588 3.48924 3.67347 4.10357 4.12703 4.20955 4.33070 4.43623 4.71971 4.78831 5.10138 5.13958 5.20539 5.30434 5.33777 5.41898 5.55570 5.61047 5.64607 5.86521 5.88645 6.12640 6.32463 6.49415 6.71811 6.93292 7.59309 7.63990 8.35276 8.59543 9.24002 10.86370 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.049848 B = 0.003634 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.571850 B = 7703.455884 C = 7869.029285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.515 6.515 13 N -0.737 5.737 14 C 0.141 3.859 15 C 0.079 3.921 16 N -0.827 5.827 17 C -0.144 4.144 18 C 0.041 3.959 19 O -0.368 6.368 20 C 0.013 3.987 21 H 0.269 0.731 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.392 0.608 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.344 0.656 28 H 0.344 0.656 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.583 -19.576 0.089 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.389 6.389 13 N -0.393 5.393 14 C 0.017 3.983 15 C -0.015 4.015 16 N -0.359 5.359 17 C -0.182 4.182 18 C -0.036 4.036 19 O -0.285 6.285 20 C -0.066 4.066 21 H 0.079 0.921 22 H 0.107 0.893 23 H 0.108 0.892 24 H 0.226 0.774 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.703 -19.913 -0.167 21.732 hybrid contribution 3.306 1.442 0.509 3.643 sum 12.009 -18.471 0.342 22.035 Atomic orbital electron populations 1.70009 1.05957 1.27579 1.46735 1.24990 0.95028 0.99023 0.94520 0.86220 0.79230 0.81233 0.78782 1.19939 1.20811 1.19948 1.22831 0.94874 0.91698 1.59114 0.90984 1.85417 1.04845 0.96254 1.96715 1.23532 1.06634 0.95378 1.04872 1.20294 0.86510 0.86207 0.75106 1.90710 1.15320 1.85548 1.47286 1.45940 1.09549 1.05550 1.78226 1.21306 0.94221 0.79770 1.03014 1.22449 0.93845 0.96033 0.89183 1.58810 1.22585 1.07941 1.46588 1.22990 1.03080 0.93313 0.98866 1.23480 1.00771 0.90748 0.88607 1.89185 1.82329 1.24110 1.32926 1.24436 0.96579 0.92582 0.93037 0.92114 0.89293 0.89180 0.77409 0.90674 0.90556 0.84137 0.84174 0.89405 0.89152 0.88671 0.92295 0.92303 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.96 7.85 -10.99 -0.09 9.87 16 12 O -0.51 -11.84 15.86 5.56 0.09 -11.75 16 13 N -0.74 -9.66 4.99 -60.29 -0.30 -9.96 16 14 C 0.14 1.70 4.55 -4.04 -0.02 1.69 16 15 C 0.08 0.67 0.98 -130.03 -0.13 0.54 16 16 N -0.83 -5.94 8.84 2.00 0.02 -5.93 16 17 C -0.14 -1.06 6.46 -25.16 -0.16 -1.22 16 18 C 0.04 0.30 7.63 37.94 0.29 0.59 16 19 O -0.37 -3.90 11.65 -35.23 -0.41 -4.31 16 20 C 0.01 0.11 6.80 37.93 0.26 0.37 16 21 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 23 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 24 H 0.39 3.89 6.99 -40.82 -0.29 3.61 16 25 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.34 2.29 7.34 -39.29 -0.29 2.00 16 28 H 0.34 1.81 8.93 -39.29 -0.35 1.46 16 29 H 0.09 0.68 7.73 -51.93 -0.40 0.28 16 30 H 0.09 0.57 7.95 -51.93 -0.41 0.15 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.41 8.04 -51.93 -0.42 -0.01 16 34 H 0.10 0.92 7.62 -51.93 -0.40 0.52 16 LS Contribution 300.99 15.07 4.54 4.54 Total: -1.00 -34.98 300.99 -6.63 -41.61 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.63 Total: 2.80 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 0.57 Total: -4.04 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.45 Total: -41.42 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.32 Total: -16.06 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.98 -6.63 -41.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701024532.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.805 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds