Wall clock time and date at job start Mon Mar 30 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 119.99952 * 2 1 4 4 H 1.48493 * 109.47251 * 239.99564 * 3 2 1 5 5 H 1.48499 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47069 * 119.99655 * 3 2 1 7 7 C 1.38796 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00101 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00054 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00151 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47156 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99781 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99622 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 N 1.46908 * 110.45835 * 307.60426 * 15 14 13 17 17 C 1.54504 * 110.51327 * 185.00006 * 15 14 13 18 18 C 1.54483 * 104.06277 * 241.35225 * 17 15 14 19 19 O 1.44422 * 104.80149 * 23.98211 * 18 17 15 20 20 C 1.44427 * 105.27580 * 319.48527 * 19 18 17 21 21 H 0.96999 * 120.00126 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46925 * 60.00021 * 10 9 7 23 23 H 1.09002 * 109.47115 * 300.00178 * 10 9 7 24 24 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 25 25 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 26 26 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 27 27 H 1.00897 * 110.99860 * 59.29571 * 16 15 14 28 28 H 1.00894 * 111.00021 * 183.24631 * 16 15 14 29 29 H 1.09002 * 110.51302 * 359.97438 * 17 15 14 30 30 H 1.09000 * 110.51266 * 122.57630 * 17 15 14 31 31 H 1.09006 * 110.36999 * 142.80296 * 18 17 15 32 32 H 1.08994 * 110.37314 * 265.03727 * 18 17 15 33 33 H 1.09007 * 110.36858 * 281.68561 * 20 19 18 34 34 H 1.08993 * 110.37729 * 159.34836 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3028 0.0017 12 8 0.7911 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0033 14 6 2.3305 -7.7151 0.0034 15 6 3.5025 -8.6985 0.0046 16 7 4.4365 -8.3856 -1.0853 17 6 2.9907 -10.1509 -0.1213 18 6 3.4684 -10.8314 1.1807 19 8 3.6324 -9.7499 2.1236 20 6 4.2288 -8.6733 1.3678 21 1 -0.4850 0.8400 -0.0004 22 1 3.1238 -3.7310 0.8925 23 1 3.1252 -3.7318 -0.8874 24 1 3.8010 -6.1835 0.0043 25 1 1.7209 -7.8747 0.8928 26 1 1.7228 -7.8757 -0.8871 27 1 4.7993 -7.4487 -0.9927 28 1 5.1851 -9.0609 -1.1250 29 1 1.9026 -10.1684 -0.1840 30 1 3.4307 -10.6368 -0.9922 31 1 2.7173 -11.5358 1.5383 32 1 4.4177 -11.3410 1.0163 33 1 5.2959 -8.8504 1.2326 34 1 4.0621 -7.7199 1.8690 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701024532.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:13 Heat of formation + Delta-G solvation = -110.612143 kcal Electronic energy + Delta-G solvation = -17169.578614 eV Core-core repulsion = 14227.342386 eV Total energy + Delta-G solvation = -2942.236228 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.30531 -40.18638 -36.75539 -34.58896 -34.42535 -31.30039 -31.23209 -29.06109 -27.69352 -26.61568 -23.70603 -21.78078 -20.98564 -19.85574 -18.21730 -17.64668 -17.28257 -16.92710 -16.86681 -16.58834 -16.27467 -15.90994 -15.83130 -14.85582 -14.71043 -14.49005 -13.87402 -13.76560 -13.39835 -13.16918 -13.12843 -12.85562 -12.70393 -12.57763 -12.21120 -11.98283 -11.73092 -11.12412 -11.01266 -10.84045 -10.27827 -10.20200 -9.74518 -8.66881 -8.34057 -6.12639 1.26453 1.44702 1.46949 1.56618 1.58688 2.21196 2.28440 2.87048 3.00061 3.28906 3.37888 3.51492 3.62053 3.76524 3.95484 4.14916 4.22132 4.29598 4.49812 4.51385 4.58952 4.64554 4.74677 4.82252 4.88191 5.07206 5.33030 5.41929 5.72205 6.08288 6.19979 6.40410 6.48366 7.06975 7.19514 8.75003 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.049848 B = 0.003634 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.571850 B = 7703.455884 C = 7869.029285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.708 5.708 14 C 0.141 3.859 15 C 0.090 3.910 16 N -0.828 5.828 17 C -0.142 4.142 18 C 0.039 3.961 19 O -0.398 6.398 20 C 0.014 3.986 21 H 0.271 0.729 22 H 0.111 0.889 23 H 0.112 0.888 24 H 0.412 0.588 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.348 0.652 28 H 0.360 0.640 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.557 -20.157 -0.221 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.320 3.680 12 O -0.444 6.444 13 N -0.363 5.363 14 C 0.017 3.983 15 C -0.004 4.004 16 N -0.363 5.363 17 C -0.180 4.180 18 C -0.037 4.037 19 O -0.317 6.317 20 C -0.066 4.066 21 H 0.080 0.920 22 H 0.129 0.871 23 H 0.131 0.869 24 H 0.249 0.751 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.163 0.837 28 H 0.176 0.824 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.749 -20.540 -0.481 23.668 hybrid contribution 2.423 1.470 0.601 2.897 sum 14.172 -19.070 0.119 23.759 Atomic orbital electron populations 1.70182 1.08029 1.28693 1.47945 1.26144 0.95960 1.03376 0.93698 0.84990 0.77783 0.75602 0.79534 1.18571 1.20485 1.18614 1.23187 0.95404 0.91951 1.58996 0.89757 1.85621 1.10614 0.99303 1.97066 1.23366 1.03582 0.94091 1.06940 1.20105 0.86206 0.86726 0.75001 1.90699 1.17504 1.86105 1.50049 1.45623 1.09983 1.04955 1.75717 1.21370 0.95803 0.79543 1.01588 1.22238 0.92800 0.95464 0.89871 1.58772 1.23136 1.08737 1.45661 1.22998 1.02749 0.92529 0.99734 1.23652 1.02121 0.90154 0.87799 1.89156 1.82755 1.25292 1.34454 1.24491 0.97764 0.91899 0.92409 0.91992 0.87087 0.86937 0.75088 0.92291 0.91933 0.83695 0.82419 0.90228 0.87469 0.87995 0.90242 0.89912 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.32 13.22 21.65 0.29 -56.04 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 11 C 0.53 19.80 7.85 87.66 0.69 20.48 16 12 O -0.57 -26.76 15.86 -3.03 -0.05 -26.81 16 13 N -0.71 -17.62 4.99 -463.06 -2.31 -19.93 16 14 C 0.14 3.31 4.55 86.38 0.39 3.71 16 15 C 0.09 1.35 0.98 4.54 0.00 1.36 16 16 N -0.83 -9.46 8.84 -147.57 -1.30 -10.76 16 17 C -0.14 -1.80 6.46 31.61 0.20 -1.60 16 18 C 0.04 0.49 7.63 72.49 0.55 1.04 16 19 O -0.40 -7.82 11.65 -148.98 -1.74 -9.55 16 20 C 0.01 0.21 6.80 72.49 0.49 0.70 16 21 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 22 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 23 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 24 H 0.41 7.11 6.99 -92.71 -0.65 6.47 16 25 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.35 3.50 7.34 -89.70 -0.66 2.85 16 28 H 0.36 2.46 8.93 -89.70 -0.80 1.66 16 29 H 0.08 1.15 7.73 -2.39 -0.02 1.13 16 30 H 0.11 1.02 7.95 -2.39 -0.02 1.00 16 31 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.87 8.04 -2.38 -0.02 0.85 16 34 H 0.09 1.48 7.62 -2.39 -0.02 1.46 16 Total: -1.00 -78.21 300.99 -1.33 -79.54 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -0.97 Total: 16.09 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 3.89 Total: -8.31 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -3.33 Total: -86.73 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.78 Total: -36.36 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -78.21 -1.33 -79.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701024532.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.073 kcal (2) G-P(sol) polarization free energy of solvation -78.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds