Wall clock time and date at job start Mon Mar 30 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99343 * 2 1 4 4 H 1.48503 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47409 * 299.99658 * 3 2 1 6 6 H 1.48493 * 109.47519 * 59.99880 * 3 2 1 7 7 C 1.37871 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00354 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99938 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40028 * 66.45960 * 9 7 2 11 11 O 1.42100 * 106.40371 * 293.54017 * 9 7 2 12 12 N 1.65601 * 107.21839 * 179.97438 * 9 7 2 13 13 C 1.47423 * 125.64749 * 90.02167 * 12 9 7 14 14 C 1.54909 * 104.83351 * 155.83687 * 13 12 9 15 15 C 1.55158 * 101.61642 * 36.99324 * 14 13 12 16 16 H 1.08999 * 110.72042 * 82.87870 * 15 14 13 17 17 N 1.46899 * 110.72159 * 206.15780 * 15 14 13 18 18 C 1.47481 * 110.99677 * 197.57500 * 17 15 14 19 19 C 1.53516 * 87.93294 * 138.69995 * 18 17 15 20 20 C 1.47482 * 110.99561 * 293.54280 * 17 15 14 21 21 C 1.47016 * 125.64810 * 269.98721 * 12 9 7 22 22 H 0.96995 * 120.00559 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.36544 * 37.00109 * 13 12 9 24 24 H 1.09002 * 110.37016 * 274.68034 * 13 12 9 25 25 H 1.09002 * 111.00594 * 155.08642 * 14 13 12 26 26 H 1.09002 * 111.00655 * 278.89906 * 14 13 12 27 27 H 1.08999 * 113.47535 * 253.46534 * 18 17 15 28 28 H 1.09001 * 113.47777 * 23.93082 * 18 17 15 29 29 H 1.08997 * 114.17086 * 220.32505 * 19 18 17 30 30 H 1.08996 * 114.34333 * 87.63156 * 19 18 17 31 31 H 1.08999 * 113.47691 * 336.06465 * 20 17 15 32 32 H 1.08994 * 113.47791 * 106.53353 * 20 17 15 33 33 H 1.09000 * 109.88531 * 300.50224 * 21 12 9 34 34 H 1.09000 * 109.88853 * 61.67394 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 16 1.1237 -2.7200 0.0005 10 8 0.4521 -2.7955 -1.2495 11 8 0.4511 -2.7950 1.2500 12 7 2.2486 -3.9353 0.0005 13 6 2.8318 -4.5662 1.1985 14 6 3.2932 -5.9669 0.7243 15 6 3.8043 -5.6591 -0.7080 16 1 4.8262 -5.2810 -0.6799 17 7 3.7133 -6.8524 -1.5599 18 6 4.5580 -6.7103 -2.7605 19 6 4.9742 -8.1760 -2.5731 20 6 4.6412 -7.9023 -1.0997 21 6 2.8304 -4.5643 -1.1941 22 1 -0.4851 0.8400 0.0004 23 1 2.0800 -4.6597 1.9822 24 1 3.6834 -3.9871 1.5558 25 1 4.0985 -6.3467 1.3532 26 1 2.4572 -6.6659 0.6991 27 1 3.9890 -6.5338 -3.6733 28 1 5.3797 -6.0057 -2.6323 29 1 6.0301 -8.3680 -2.7639 30 1 4.3121 -8.8961 -3.0539 31 1 5.4852 -7.5158 -0.5284 32 1 4.1429 -8.7359 -0.6050 33 1 2.0417 -5.0126 -1.7984 34 1 3.3708 -3.8201 -1.7791 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702303085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:03 Heat of formation + Delta-G solvation = -47.310125 kcal Electronic energy + Delta-G solvation = -18186.021571 eV Core-core repulsion = 15246.530325 eV Total energy + Delta-G solvation = -2939.491246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25097 -37.19490 -35.19766 -33.92397 -33.06764 -30.89600 -29.08901 -26.25629 -26.07417 -25.85048 -21.72381 -20.68213 -19.92592 -18.70635 -17.48036 -16.39317 -16.32012 -15.74371 -15.14160 -14.68102 -14.11071 -14.06408 -13.71315 -13.25913 -12.87882 -12.70285 -12.36309 -12.00574 -11.86877 -11.67406 -11.22653 -11.18332 -11.01786 -10.79161 -10.66149 -10.58030 -10.45663 -10.26436 -10.24944 -10.12845 -9.24589 -8.94191 -8.87825 -8.10829 -6.68035 -5.30180 2.26079 3.06008 3.13944 3.21299 3.89232 4.08087 4.30579 4.57354 4.63274 4.70439 4.75935 5.06365 5.16443 5.27459 5.27932 5.46401 5.60575 5.62354 5.68073 5.78020 5.86476 5.90034 5.99763 6.05738 6.12737 6.24753 6.35001 6.39578 6.43505 6.91252 7.10120 7.34789 7.51283 7.99982 8.90415 10.25513 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.034801 B = 0.005715 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.380066 B = 4898.010482 C = 5121.794214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.729 3.271 10 O -1.000 7.000 11 O -1.002 7.002 12 N -1.020 6.020 13 C 0.122 3.878 14 C -0.121 4.121 15 C 0.036 3.964 16 H 0.062 0.938 17 N -0.462 5.462 18 C -0.005 4.005 19 C -0.147 4.147 20 C -0.001 4.001 21 C 0.138 3.862 22 H 0.290 0.710 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.674 -12.035 -1.843 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.830 3.170 10 O -0.991 6.991 11 O -0.992 6.992 12 N -0.856 5.856 13 C -0.005 4.005 14 C -0.160 4.160 15 C -0.074 4.074 16 H 0.080 0.920 17 N -0.185 5.185 18 C -0.134 4.134 19 C -0.185 4.185 20 C -0.130 4.130 21 C 0.011 3.989 22 H 0.101 0.899 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.748 -12.125 -1.878 15.670 hybrid contribution 1.880 1.604 0.157 2.476 sum 11.628 -10.521 -1.722 15.776 Atomic orbital electron populations 1.69906 1.06773 1.30642 1.40273 1.24767 0.94479 1.00822 0.88517 0.86122 0.80393 0.80381 0.78575 1.18685 1.19572 1.19571 1.30659 1.06165 1.11879 1.66627 0.88017 1.00122 0.71586 0.72502 0.72750 1.93356 1.72518 1.87481 1.45737 1.93350 1.72441 1.87534 1.45881 1.59135 1.61744 1.54171 1.10577 1.21795 0.98113 0.91784 0.88784 1.22807 1.01187 0.97811 0.94225 1.23372 0.98325 0.91613 0.94121 0.91970 1.69021 1.38859 1.06239 1.04398 1.23812 0.96375 0.96669 0.96526 1.23113 1.01500 0.97239 0.96661 1.23704 0.95589 0.96726 0.96942 1.21357 0.96036 0.93410 0.88070 0.89920 0.90145 0.92272 0.90857 0.89947 0.89503 0.91232 0.90905 0.89000 0.91453 0.89822 0.90794 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.34 13.19 55.43 0.73 -24.61 16 2 C 0.13 3.75 5.46 -17.82 -0.10 3.66 16 3 Si 0.92 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -1.02 -28.85 9.75 30.60 0.30 -28.55 16 8 H 0.10 2.65 7.81 -52.49 -0.41 2.24 16 9 S 2.73 75.46 5.22 -107.50 -0.56 74.89 16 10 O -1.00 -30.35 17.60 -57.17 -1.01 -31.36 16 11 O -1.00 -30.10 17.34 -57.17 -0.99 -31.09 16 12 N -1.02 -21.88 3.70 -111.39 -0.41 -22.29 16 13 C 0.12 2.12 7.11 -2.53 -0.02 2.10 16 14 C -0.12 -1.67 6.15 -24.58 -0.15 -1.82 16 15 C 0.04 0.51 2.23 -65.85 -0.15 0.36 16 16 H 0.06 0.79 7.65 -51.93 -0.40 0.40 16 17 N -0.46 -5.85 6.13 -234.37 -1.44 -7.29 16 18 C 0.00 -0.05 7.62 -7.54 -0.06 -0.11 16 19 C -0.15 -1.23 8.47 -26.20 -0.22 -1.46 16 20 C 0.00 -0.01 7.15 -7.54 -0.05 -0.06 16 21 C 0.14 2.54 6.65 -3.04 -0.02 2.52 16 22 H 0.29 7.76 8.31 -40.82 -0.34 7.42 16 23 H 0.08 1.43 7.78 -51.93 -0.40 1.03 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.68 7.63 -51.93 -0.40 0.28 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 294.87 15.07 4.44 4.44 Total: -1.00 -35.39 294.87 -9.67 -45.07 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.95 Total: -0.26 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -0.47 Total: -23.36 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -1.12 Total: -54.20 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -2.00 Total: -62.45 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 75.46 SS G_CDS: -0.56 Total: 74.89 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.39 -9.67 -45.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702303085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.242 kcal (2) G-P(sol) polarization free energy of solvation -35.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds