Wall clock time and date at job start Mon Mar 30 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 119.99343 * 2 1 4 4 H 1.48503 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47409 * 299.99658 * 3 2 1 6 6 H 1.48493 * 109.47519 * 59.99880 * 3 2 1 7 7 C 1.37871 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00354 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99938 * 0.02562 * 7 2 1 10 10 O 1.42104 * 106.40028 * 66.45960 * 9 7 2 11 11 O 1.42100 * 106.40371 * 293.54017 * 9 7 2 12 12 N 1.65601 * 107.21839 * 179.97438 * 9 7 2 13 13 C 1.47423 * 125.64749 * 90.02167 * 12 9 7 14 14 C 1.54909 * 104.83351 * 155.83687 * 13 12 9 15 15 C 1.55158 * 101.61642 * 36.99324 * 14 13 12 16 16 H 1.08999 * 110.72042 * 82.87870 * 15 14 13 17 17 N 1.46899 * 110.72159 * 206.15780 * 15 14 13 18 18 C 1.47481 * 110.99677 * 197.57500 * 17 15 14 19 19 C 1.53516 * 87.93294 * 138.69995 * 18 17 15 20 20 C 1.47482 * 110.99561 * 293.54280 * 17 15 14 21 21 C 1.47016 * 125.64810 * 269.98721 * 12 9 7 22 22 H 0.96995 * 120.00559 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.36544 * 37.00109 * 13 12 9 24 24 H 1.09002 * 110.37016 * 274.68034 * 13 12 9 25 25 H 1.09002 * 111.00594 * 155.08642 * 14 13 12 26 26 H 1.09002 * 111.00655 * 278.89906 * 14 13 12 27 27 H 1.08999 * 113.47535 * 253.46534 * 18 17 15 28 28 H 1.09001 * 113.47777 * 23.93082 * 18 17 15 29 29 H 1.08997 * 114.17086 * 220.32505 * 19 18 17 30 30 H 1.08996 * 114.34333 * 87.63156 * 19 18 17 31 31 H 1.08999 * 113.47691 * 336.06465 * 20 17 15 32 32 H 1.08994 * 113.47791 * 106.53353 * 20 17 15 33 33 H 1.09000 * 109.88531 * 300.50224 * 21 12 9 34 34 H 1.09000 * 109.88853 * 61.67394 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0047 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 16 1.1237 -2.7200 0.0005 10 8 0.4521 -2.7955 -1.2495 11 8 0.4511 -2.7950 1.2500 12 7 2.2486 -3.9353 0.0005 13 6 2.8318 -4.5662 1.1985 14 6 3.2932 -5.9669 0.7243 15 6 3.8043 -5.6591 -0.7080 16 1 4.8262 -5.2810 -0.6799 17 7 3.7133 -6.8524 -1.5599 18 6 4.5580 -6.7103 -2.7605 19 6 4.9742 -8.1760 -2.5731 20 6 4.6412 -7.9023 -1.0997 21 6 2.8304 -4.5643 -1.1941 22 1 -0.4851 0.8400 0.0004 23 1 2.0800 -4.6597 1.9822 24 1 3.6834 -3.9871 1.5558 25 1 4.0985 -6.3467 1.3532 26 1 2.4572 -6.6659 0.6991 27 1 3.9890 -6.5338 -3.6733 28 1 5.3797 -6.0057 -2.6323 29 1 6.0301 -8.3680 -2.7639 30 1 4.3121 -8.8961 -3.0539 31 1 5.4852 -7.5158 -0.5284 32 1 4.1429 -8.7359 -0.6050 33 1 2.0417 -5.0126 -1.7984 34 1 3.3708 -3.8201 -1.7791 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702303085.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:03 Heat of formation + Delta-G solvation = -77.212342 kcal Electronic energy + Delta-G solvation = -18187.318228 eV Core-core repulsion = 15246.530325 eV Total energy + Delta-G solvation = -2940.787904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17151 -38.49716 -37.48311 -36.20965 -35.22374 -32.14857 -30.36758 -28.30956 -27.30726 -26.66821 -23.16505 -21.77291 -20.82428 -20.68367 -19.29936 -18.38282 -17.53803 -17.13711 -16.64092 -16.22790 -15.97853 -15.51991 -15.00807 -14.63824 -14.39049 -14.03723 -13.88173 -13.36269 -13.30917 -13.11979 -13.05190 -12.64690 -12.56167 -12.51872 -12.30377 -12.19293 -11.98186 -11.75770 -11.54564 -11.36805 -11.29801 -11.02152 -9.81911 -9.78453 -8.78238 -7.53904 0.21094 1.31432 1.31501 1.50257 2.18120 2.53268 2.78272 3.09080 3.37459 3.67031 3.72042 3.75162 4.01644 4.14559 4.25341 4.36789 4.42386 4.53983 4.61260 4.64794 4.77543 4.81209 4.88372 4.92957 4.95847 5.05564 5.14114 5.18837 5.32959 5.35555 5.43189 5.77496 5.86551 6.18333 6.72970 8.17660 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.034801 B = 0.005715 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.380066 B = 4898.010482 C = 5121.794214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.067 3.933 3 Si 0.996 3.004 4 H -0.247 1.247 5 H -0.258 1.258 6 H -0.257 1.257 7 C -1.039 5.039 8 H 0.119 0.881 9 S 2.730 3.270 10 O -1.042 7.042 11 O -1.039 7.039 12 N -1.024 6.024 13 C 0.107 3.893 14 C -0.108 4.108 15 C 0.050 3.950 16 H 0.085 0.915 17 N -0.491 5.491 18 C -0.012 4.012 19 C -0.133 4.133 20 C 0.002 3.998 21 C 0.128 3.872 22 H 0.300 0.700 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.829 -12.394 -1.610 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.146 4.146 3 Si 0.814 3.186 4 H -0.170 1.170 5 H -0.182 1.182 6 H -0.181 1.181 7 C -1.173 5.173 8 H 0.137 0.863 9 S 2.834 3.166 10 O -1.032 7.032 11 O -1.029 7.029 12 N -0.863 5.863 13 C -0.018 4.018 14 C -0.147 4.147 15 C -0.061 4.061 16 H 0.103 0.897 17 N -0.215 5.215 18 C -0.141 4.141 19 C -0.171 4.171 20 C -0.127 4.127 21 C 0.002 3.998 22 H 0.110 0.890 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.134 0.866 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.892 -12.518 -1.643 18.045 hybrid contribution 0.894 1.611 0.061 1.844 sum 13.786 -10.907 -1.583 17.650 Atomic orbital electron populations 1.70000 1.08877 1.32444 1.41364 1.26120 0.95455 1.05582 0.87426 0.85024 0.79389 0.74667 0.79550 1.16964 1.18195 1.18064 1.30962 1.07108 1.12446 1.66790 0.86303 0.99591 0.72240 0.73385 0.71370 1.93289 1.74519 1.88334 1.47104 1.93288 1.74290 1.88343 1.46972 1.58580 1.61160 1.53207 1.13346 1.22182 0.98254 0.94198 0.87140 1.22780 1.02183 0.95089 0.94614 1.23263 0.97804 0.90925 0.94073 0.89731 1.69020 1.40913 1.06253 1.05288 1.23932 0.96255 0.98611 0.95321 1.23058 1.02824 0.95529 0.95665 1.23805 0.95338 0.95656 0.97887 1.21599 0.96432 0.94826 0.86946 0.88966 0.91432 0.90249 0.86649 0.90742 0.90559 0.90194 0.88618 0.89079 0.89759 0.89415 0.92945 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.85 13.19 21.45 0.28 -54.57 16 2 C 0.07 3.81 5.46 84.65 0.46 4.27 16 3 Si 1.00 41.93 29.54 68.60 2.03 43.95 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 7 C -1.04 -59.36 9.75 67.73 0.66 -58.70 16 8 H 0.12 6.13 7.81 -2.91 -0.02 6.11 16 9 S 2.73 156.34 5.22 -56.49 -0.29 156.05 16 10 O -1.04 -66.27 17.60 -128.00 -2.25 -68.52 16 11 O -1.04 -65.01 17.34 -128.00 -2.22 -67.23 16 12 N -1.02 -44.49 3.70 -506.33 -1.87 -46.37 16 13 C 0.11 3.64 7.11 86.86 0.62 4.26 16 14 C -0.11 -2.70 6.15 31.99 0.20 -2.50 16 15 C 0.05 1.29 2.23 46.12 0.10 1.40 16 16 H 0.08 1.84 7.65 -2.39 -0.02 1.82 16 17 N -0.49 -11.44 6.13 -895.40 -5.49 -16.93 16 18 C -0.01 -0.23 7.62 83.58 0.64 0.40 16 19 C -0.13 -1.81 8.47 30.94 0.26 -1.55 16 20 C 0.00 0.02 7.15 83.58 0.60 0.62 16 21 C 0.13 4.72 6.65 86.75 0.58 5.30 16 22 H 0.30 16.36 8.31 -92.71 -0.77 15.59 16 23 H 0.07 2.43 7.78 -2.39 -0.02 2.41 16 24 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 25 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.33 7.63 -2.39 -0.02 1.31 16 29 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.06 7.90 -2.39 -0.02 1.05 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 2.12 8.03 -2.39 -0.02 2.10 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -79.61 294.87 -4.63 -84.24 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.08 Total: 15.88 kcal Atomic # 6 Polarization: -50.62 SS G_CDS: 4.11 Total: -46.50 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -7.08 Total: -117.86 kcal Atomic # 8 Polarization: -131.28 SS G_CDS: -4.47 Total: -135.75 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 156.34 SS G_CDS: -0.29 Total: 156.05 kcal Total: -79.61 -4.63 -84.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702303085.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.029 kcal (2) G-P(sol) polarization free energy of solvation -79.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds