Wall clock time and date at job start Mon Mar 30 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48504 * 109.47311 * 239.99972 * 3 2 1 5 5 H 1.48497 * 109.47403 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47026 * 120.00139 * 3 2 1 7 7 C 1.37878 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99766 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99863 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.39978 * 66.46392 * 9 7 2 11 11 O 1.42098 * 106.40363 * 293.53942 * 9 7 2 12 12 N 1.65602 * 107.21573 * 180.02562 * 9 7 2 13 13 C 1.47433 * 125.64567 * 269.95822 * 12 9 7 14 14 C 1.54909 * 104.82714 * 204.16516 * 13 12 9 15 15 C 1.55156 * 101.58508 * 322.98808 * 14 13 12 16 16 H 1.08994 * 110.72027 * 277.14295 * 15 14 13 17 17 N 1.46897 * 110.71860 * 153.86709 * 15 14 13 18 18 C 1.47477 * 111.00177 * 82.26158 * 17 15 14 19 19 C 1.53507 * 87.93270 * 138.70312 * 18 17 15 20 20 C 1.47483 * 110.99828 * 178.23037 * 17 15 14 21 21 C 1.47022 * 125.65289 * 89.99890 * 12 9 7 22 22 H 0.97002 * 120.00163 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.36763 * 323.00045 * 13 12 9 24 24 H 1.08996 * 110.36503 * 85.21767 * 13 12 9 25 25 H 1.09004 * 110.99642 * 204.91323 * 14 13 12 26 26 H 1.09001 * 111.00492 * 81.06885 * 14 13 12 27 27 H 1.09004 * 113.47776 * 253.47356 * 18 17 15 28 28 H 1.09006 * 113.47456 * 23.93275 * 18 17 15 29 29 H 1.09004 * 114.16748 * 220.33121 * 19 18 17 30 30 H 1.08992 * 114.17405 * 87.62843 * 19 18 17 31 31 H 1.08995 * 113.47390 * 336.06791 * 20 17 15 32 32 H 1.09004 * 113.47023 * 106.53072 * 20 17 15 33 33 H 1.08997 * 109.87944 * 59.48565 * 21 12 9 34 34 H 1.08998 * 110.01097 * 298.39840 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.8312 -4.5666 -1.1986 14 6 3.2926 -5.9672 -0.7241 15 6 3.8042 -5.6581 0.7077 16 1 4.8259 -5.2797 0.6788 17 7 3.7141 -6.8508 1.5605 18 6 4.8735 -7.7382 1.3524 19 6 4.9094 -7.9555 2.8716 20 6 4.2381 -6.5755 2.9113 21 6 2.8303 -4.5643 1.1941 22 1 -0.4850 0.8400 0.0004 23 1 2.0792 -4.6602 -1.9821 24 1 3.6815 -3.9866 -1.5573 25 1 4.0976 -6.3471 -1.3532 26 1 2.4564 -6.6659 -0.6979 27 1 4.6342 -8.6408 0.7902 28 1 5.7523 -7.2212 0.9668 29 1 5.9133 -7.9757 3.2959 30 1 4.2756 -8.7704 3.2210 31 1 4.9471 -5.7483 2.9417 32 1 3.4601 -6.4928 3.6703 33 1 2.0417 -5.0123 1.7987 34 1 3.3704 -3.8215 1.7811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702303087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:06 Heat of formation + Delta-G solvation = -47.455648 kcal Electronic energy + Delta-G solvation = -18204.549837 eV Core-core repulsion = 15265.052280 eV Total energy + Delta-G solvation = -2939.497557 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24735 -37.19636 -35.20629 -33.93214 -33.07238 -30.89702 -29.08707 -26.31734 -26.08485 -25.75908 -21.75438 -20.66002 -19.91098 -18.70581 -17.49416 -16.39154 -16.32125 -15.73232 -15.16509 -14.71707 -14.12294 -13.97168 -13.68016 -13.28558 -12.92416 -12.63087 -12.39495 -11.99826 -11.90452 -11.68734 -11.21595 -11.19673 -11.01364 -10.75125 -10.62059 -10.61321 -10.47964 -10.27227 -10.25685 -10.13355 -9.23037 -8.95476 -8.88856 -8.12096 -6.68175 -5.30768 2.25121 3.08770 3.12939 3.18574 3.89867 4.07727 4.31355 4.56848 4.63390 4.70444 4.79419 5.06041 5.15921 5.27119 5.31217 5.47519 5.59911 5.63885 5.71072 5.80062 5.85129 5.89830 5.99434 6.06685 6.14316 6.24578 6.31451 6.38295 6.45346 6.89920 7.10333 7.34353 7.50208 7.98418 8.89719 10.25405 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.033563 B = 0.005798 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.042581 B = 4827.740752 C = 5047.936358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.265 1.265 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.729 3.271 10 O -1.001 7.001 11 O -1.001 7.001 12 N -1.020 6.020 13 C 0.121 3.879 14 C -0.117 4.117 15 C 0.036 3.964 16 H 0.062 0.938 17 N -0.462 5.462 18 C -0.001 4.001 19 C -0.147 4.147 20 C -0.005 4.005 21 C 0.136 3.864 22 H 0.292 0.708 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.553 -11.648 2.363 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.154 5.154 8 H 0.119 0.881 9 S 2.831 3.169 10 O -0.992 6.992 11 O -0.991 6.991 12 N -0.856 5.856 13 C -0.006 4.006 14 C -0.156 4.156 15 C -0.075 4.075 16 H 0.080 0.920 17 N -0.185 5.185 18 C -0.131 4.131 19 C -0.185 4.185 20 C -0.134 4.134 21 C 0.009 3.991 22 H 0.102 0.898 23 H 0.099 0.901 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.656 -11.851 2.239 15.450 hybrid contribution 1.857 1.731 0.019 2.539 sum 11.513 -10.121 2.258 15.494 Atomic orbital electron populations 1.69888 1.06774 1.30851 1.40065 1.24760 0.94484 1.00786 0.88525 0.86189 0.79873 0.79669 0.79726 1.18870 1.20054 1.18910 1.30604 1.06080 1.11898 1.66862 0.88110 1.00104 0.71576 0.72480 0.72751 1.93352 1.72429 1.87521 1.45859 1.93354 1.72522 1.87484 1.45759 1.59128 1.61732 1.54160 1.10552 1.21820 0.98118 0.91902 0.88732 1.22751 1.01197 0.97575 0.94096 1.23358 0.98259 0.91230 0.94606 0.91997 1.69036 1.35536 1.11371 1.02576 1.23757 0.93432 0.98689 0.97184 1.23113 1.01062 0.98078 0.96230 1.23770 0.98944 0.97040 0.93684 1.21380 0.96004 0.93527 0.88212 0.89802 0.90149 0.92283 0.90889 0.89880 0.89857 0.91442 0.90866 0.89009 0.91150 0.89434 0.90961 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.32 13.19 55.43 0.73 -24.58 16 2 C 0.13 3.76 5.46 -17.82 -0.10 3.67 16 3 Si 0.92 20.85 29.54 -169.99 -5.02 15.82 16 4 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 7 C -1.02 -28.83 9.75 30.60 0.30 -28.53 16 8 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 9 S 2.73 75.36 5.22 -107.50 -0.56 74.79 16 10 O -1.00 -30.07 17.34 -57.17 -0.99 -31.07 16 11 O -1.00 -30.27 17.60 -57.17 -1.01 -31.28 16 12 N -1.02 -21.84 3.70 -111.42 -0.41 -22.25 16 13 C 0.12 2.11 7.11 -2.52 -0.02 2.09 16 14 C -0.12 -1.63 6.64 -24.58 -0.16 -1.79 16 15 C 0.04 0.50 2.21 -65.88 -0.15 0.36 16 16 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 17 N -0.46 -5.86 6.12 -234.45 -1.44 -7.29 16 18 C 0.00 -0.01 7.59 -7.56 -0.06 -0.07 16 19 C -0.15 -1.25 8.47 -26.21 -0.22 -1.47 16 20 C -0.01 -0.06 7.21 -7.55 -0.05 -0.11 16 21 C 0.14 2.47 6.18 -3.07 -0.02 2.45 16 22 H 0.29 7.83 8.31 -40.82 -0.34 7.49 16 23 H 0.08 1.44 7.78 -51.93 -0.40 1.03 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.59 7.65 -51.93 -0.40 0.19 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.38 8.03 -51.93 -0.42 0.97 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -35.24 294.90 -9.68 -44.92 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.95 Total: -0.09 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -0.48 Total: -23.42 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -1.12 Total: -54.13 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -2.00 Total: -62.34 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 75.36 SS G_CDS: -0.56 Total: 74.79 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.24 -9.68 -44.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702303087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.536 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds