Wall clock time and date at job start Mon Mar 30 2020 04:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48504 * 109.47311 * 239.99972 * 3 2 1 5 5 H 1.48497 * 109.47403 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47026 * 120.00139 * 3 2 1 7 7 C 1.37878 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99766 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99863 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.39978 * 66.46392 * 9 7 2 11 11 O 1.42098 * 106.40363 * 293.53942 * 9 7 2 12 12 N 1.65602 * 107.21573 * 180.02562 * 9 7 2 13 13 C 1.47433 * 125.64567 * 269.95822 * 12 9 7 14 14 C 1.54909 * 104.82714 * 204.16516 * 13 12 9 15 15 C 1.55156 * 101.58508 * 322.98808 * 14 13 12 16 16 H 1.08994 * 110.72027 * 277.14295 * 15 14 13 17 17 N 1.46897 * 110.71860 * 153.86709 * 15 14 13 18 18 C 1.47477 * 111.00177 * 82.26158 * 17 15 14 19 19 C 1.53507 * 87.93270 * 138.70312 * 18 17 15 20 20 C 1.47483 * 110.99828 * 178.23037 * 17 15 14 21 21 C 1.47022 * 125.65289 * 89.99890 * 12 9 7 22 22 H 0.97002 * 120.00163 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.36763 * 323.00045 * 13 12 9 24 24 H 1.08996 * 110.36503 * 85.21767 * 13 12 9 25 25 H 1.09004 * 110.99642 * 204.91323 * 14 13 12 26 26 H 1.09001 * 111.00492 * 81.06885 * 14 13 12 27 27 H 1.09004 * 113.47776 * 253.47356 * 18 17 15 28 28 H 1.09006 * 113.47456 * 23.93275 * 18 17 15 29 29 H 1.09004 * 114.16748 * 220.33121 * 19 18 17 30 30 H 1.08992 * 114.17405 * 87.62843 * 19 18 17 31 31 H 1.08995 * 113.47390 * 336.06791 * 20 17 15 32 32 H 1.09004 * 113.47023 * 106.53072 * 20 17 15 33 33 H 1.08997 * 109.87944 * 59.48565 * 21 12 9 34 34 H 1.08998 * 110.01097 * 298.39840 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7950 -1.2501 11 8 0.4518 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.8312 -4.5666 -1.1986 14 6 3.2926 -5.9672 -0.7241 15 6 3.8042 -5.6581 0.7077 16 1 4.8259 -5.2797 0.6788 17 7 3.7141 -6.8508 1.5605 18 6 4.8735 -7.7382 1.3524 19 6 4.9094 -7.9555 2.8716 20 6 4.2381 -6.5755 2.9113 21 6 2.8303 -4.5643 1.1941 22 1 -0.4850 0.8400 0.0004 23 1 2.0792 -4.6602 -1.9821 24 1 3.6815 -3.9866 -1.5573 25 1 4.0976 -6.3471 -1.3532 26 1 2.4564 -6.6659 -0.6979 27 1 4.6342 -8.6408 0.7902 28 1 5.7523 -7.2212 0.9668 29 1 5.9133 -7.9757 3.2959 30 1 4.2756 -8.7704 3.2210 31 1 4.9471 -5.7483 2.9417 32 1 3.4601 -6.4928 3.6703 33 1 2.0417 -5.0123 1.7987 34 1 3.3704 -3.8215 1.7811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702303087.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:06 Heat of formation + Delta-G solvation = -77.183172 kcal Electronic energy + Delta-G solvation = -18205.838919 eV Core-core repulsion = 15265.052280 eV Total energy + Delta-G solvation = -2940.786639 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18071 -38.50130 -37.48759 -36.21359 -35.22422 -32.15721 -30.36984 -28.30669 -27.36049 -26.61223 -23.19191 -21.76576 -20.86481 -20.63797 -19.30955 -18.38395 -17.54724 -17.13526 -16.63149 -16.26184 -15.98345 -15.57046 -14.86866 -14.69232 -14.39393 -14.02394 -13.87684 -13.38985 -13.31753 -13.17070 -13.02544 -12.64642 -12.56005 -12.51885 -12.33857 -12.19476 -11.99132 -11.77232 -11.51615 -11.37705 -11.26874 -11.04570 -9.85962 -9.76544 -8.77993 -7.54030 0.20475 1.31436 1.34360 1.47850 2.18120 2.53703 2.77201 3.10125 3.35439 3.67271 3.71715 3.74189 4.01598 4.14616 4.25045 4.36861 4.40607 4.51882 4.60387 4.65608 4.76614 4.83318 4.86559 4.92376 4.95880 5.04857 5.13361 5.20928 5.31779 5.35965 5.41168 5.76526 5.85809 6.17481 6.72772 8.17513 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.033563 B = 0.005798 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.042581 B = 4827.740752 C = 5047.936358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.067 3.933 3 Si 0.995 3.005 4 H -0.248 1.248 5 H -0.262 1.262 6 H -0.250 1.250 7 C -1.041 5.041 8 H 0.119 0.881 9 S 2.731 3.269 10 O -1.039 7.039 11 O -1.042 7.042 12 N -1.023 6.023 13 C 0.107 3.893 14 C -0.104 4.104 15 C 0.049 3.951 16 H 0.085 0.915 17 N -0.488 5.488 18 C 0.001 3.999 19 C -0.132 4.132 20 C -0.015 4.015 21 C 0.126 3.874 22 H 0.300 0.700 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.720 -11.939 2.243 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.145 4.145 3 Si 0.813 3.187 4 H -0.172 1.172 5 H -0.186 1.186 6 H -0.174 1.174 7 C -1.175 5.175 8 H 0.137 0.863 9 S 2.835 3.165 10 O -1.029 7.029 11 O -1.032 7.032 12 N -0.863 5.863 13 C -0.018 4.018 14 C -0.143 4.143 15 C -0.061 4.061 16 H 0.103 0.897 17 N -0.212 5.212 18 C -0.127 4.127 19 C -0.170 4.170 20 C -0.144 4.144 21 C 0.000 4.000 22 H 0.110 0.890 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.132 0.868 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.812 -12.176 2.117 17.802 hybrid contribution 0.868 1.716 0.078 1.924 sum 13.680 -10.460 2.195 17.360 Atomic orbital electron populations 1.69989 1.08880 1.32565 1.41203 1.26115 0.95452 1.05555 0.87424 0.85097 0.78736 0.74100 0.80802 1.17186 1.18561 1.17359 1.30920 1.07113 1.12437 1.66984 0.86262 0.99577 0.72229 0.73368 0.71374 1.93289 1.74290 1.88336 1.46979 1.93288 1.74505 1.88331 1.47095 1.58576 1.61160 1.53206 1.13319 1.22200 0.98252 0.94248 0.87116 1.22723 1.02121 0.94902 0.94588 1.23263 0.97800 0.90545 0.94509 0.89730 1.69052 1.37787 1.11109 1.03218 1.23852 0.92600 0.98234 0.98012 1.23064 1.01923 0.96349 0.95663 1.23884 0.99000 0.98955 0.92533 1.21621 0.96407 0.94905 0.87059 0.88953 0.91469 0.90248 0.86815 0.90771 0.89125 0.89885 0.88673 0.88940 0.90455 0.90694 0.92994 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.76 13.19 21.45 0.28 -54.48 16 2 C 0.07 3.83 5.46 84.66 0.46 4.29 16 3 Si 1.00 41.77 29.54 68.60 2.03 43.80 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 7 C -1.04 -59.28 9.75 67.73 0.66 -58.62 16 8 H 0.12 6.10 7.81 -2.91 -0.02 6.08 16 9 S 2.73 156.02 5.22 -56.49 -0.29 155.73 16 10 O -1.04 -64.99 17.34 -128.00 -2.22 -67.21 16 11 O -1.04 -66.01 17.60 -128.00 -2.25 -68.26 16 12 N -1.02 -44.39 3.70 -506.43 -1.87 -46.26 16 13 C 0.11 3.65 7.11 86.85 0.62 4.26 16 14 C -0.10 -2.66 6.64 31.99 0.21 -2.44 16 15 C 0.05 1.28 2.21 46.10 0.10 1.38 16 16 H 0.08 1.84 7.67 -2.39 -0.02 1.82 16 17 N -0.49 -11.37 6.12 -895.65 -5.48 -16.86 16 18 C 0.00 0.02 7.59 83.57 0.63 0.66 16 19 C -0.13 -1.85 8.47 30.94 0.26 -1.59 16 20 C -0.01 -0.30 7.21 83.57 0.60 0.31 16 21 C 0.13 4.61 6.18 86.73 0.54 5.14 16 22 H 0.30 16.44 8.31 -92.71 -0.77 15.67 16 23 H 0.07 2.43 7.78 -2.39 -0.02 2.41 16 24 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.08 1.07 7.65 -2.38 -0.02 1.05 16 29 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.41 7.87 -2.39 -0.02 1.40 16 32 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.05 2.07 8.03 -2.39 -0.02 2.05 16 34 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -79.12 294.90 -4.65 -83.76 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 1.08 Total: 16.39 kcal Atomic # 6 Polarization: -50.69 SS G_CDS: 4.09 Total: -46.61 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -7.07 Total: -117.60 kcal Atomic # 8 Polarization: -131.00 SS G_CDS: -4.47 Total: -135.47 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 156.02 SS G_CDS: -0.29 Total: 155.73 kcal Total: -79.12 -4.65 -83.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702303087.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.580 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds