Wall clock time and date at job start Mon Mar 30 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47394 * 2 1 4 4 C 1.52999 * 109.47251 * 240.00114 * 2 1 3 5 5 C 1.50702 * 109.47397 * 175.00237 * 4 2 1 6 6 H 1.08004 * 119.99868 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00493 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99340 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00210 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46941 * 60.00269 * 9 7 5 11 11 H 1.48497 * 109.47249 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47339 * 300.00220 * 9 7 5 13 13 S 1.81399 * 109.47054 * 120.00215 * 2 1 3 14 14 O 1.42102 * 109.47216 * 61.39050 * 13 2 1 15 15 C 1.81398 * 103.00088 * 305.00015 * 13 2 1 16 16 H 1.09003 * 110.98692 * 60.80183 * 15 13 2 17 17 C 1.54943 * 111.12658 * 296.55739 * 15 13 2 18 18 O 1.43648 * 105.14054 * 205.63738 * 17 15 13 19 19 C 1.43239 * 109.96505 * 24.42339 * 18 17 15 20 20 C 1.53007 * 109.82774 * 238.77586 * 19 18 17 21 21 C 1.53009 * 109.90256 * 117.84961 * 19 18 17 22 22 C 1.54380 * 107.59457 * 358.29493 * 19 18 17 23 23 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47070 * 300.00071 * 1 2 3 25 25 H 1.09002 * 109.47069 * 59.99674 * 1 2 3 26 26 H 1.08995 * 109.47278 * 295.00118 * 4 2 1 27 27 H 1.08997 * 109.46932 * 54.99972 * 4 2 1 28 28 H 0.97006 * 119.99531 * 180.02562 * 8 7 5 29 29 H 1.09008 * 110.30624 * 324.55024 * 17 15 13 30 30 H 1.08996 * 110.31022 * 86.72010 * 17 15 13 31 31 H 1.09005 * 109.46477 * 178.13904 * 20 19 18 32 32 H 1.08998 * 109.47212 * 298.13311 * 20 19 18 33 33 H 1.08999 * 109.47105 * 58.14101 * 20 19 18 34 34 H 1.08997 * 109.47065 * 301.82082 * 21 19 18 35 35 H 1.09002 * 109.46839 * 61.82075 * 21 19 18 36 36 H 1.08996 * 109.46716 * 181.81599 * 21 19 18 37 37 H 1.08996 * 110.84456 * 220.45379 * 22 19 18 38 38 H 1.08999 * 110.84893 * 96.82986 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2305 -1.1926 -2.3583 8 7 3.5764 -1.8369 -3.3000 9 14 6.0920 -1.0602 -2.4373 10 1 6.6845 -1.6865 -1.2281 11 1 6.5871 -1.7603 -3.6497 12 1 6.4845 0.3707 -2.4964 13 16 2.1346 -0.8552 1.4811 14 8 1.6877 -2.2040 1.4649 15 6 1.3148 0.0373 2.8309 16 1 0.2306 -0.0366 2.7459 17 6 1.7724 1.5168 2.8811 18 8 1.5816 1.9224 4.2458 19 6 1.6155 0.7773 5.1057 20 6 0.2993 0.6695 5.8784 21 6 2.7844 0.8963 6.0858 22 6 1.8037 -0.4696 4.2152 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2056 27 1 1.6054 -0.2617 -2.1369 28 1 4.0608 -2.2436 -4.0355 29 1 2.8242 1.5970 2.6061 30 1 1.1592 2.1252 2.2163 31 1 0.3184 -0.2217 6.5059 32 1 0.1725 1.5523 6.5050 33 1 -0.5305 0.6008 5.1750 34 1 3.7171 0.9887 5.5295 35 1 2.6456 1.7781 6.7114 36 1 2.8230 0.0070 6.7149 37 1 1.1843 -1.2946 4.5670 38 1 2.8531 -0.7614 4.1730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703066013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:12 Heat of formation + Delta-G solvation = -105.275632 kcal Electronic energy + Delta-G solvation = -18306.754871 eV Core-core repulsion = 15468.290395 eV Total energy + Delta-G solvation = -2838.464476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.67664 -35.11523 -34.58380 -33.17713 -32.29197 -31.66943 -27.59852 -27.44376 -25.82199 -23.42192 -22.11132 -20.62251 -20.05486 -16.91567 -16.65567 -16.44782 -15.88929 -14.95213 -14.84553 -14.56502 -13.81911 -13.70118 -13.52950 -13.25880 -13.07640 -12.40201 -12.28537 -12.15021 -11.98055 -11.90700 -11.71013 -11.59155 -11.40857 -11.11933 -10.87007 -10.81749 -10.70275 -10.59981 -10.33003 -9.65653 -9.51976 -9.23491 -9.12965 -8.45493 -7.52308 -6.08675 -4.14984 2.07231 3.24759 3.30941 3.35658 3.36264 3.80288 4.25531 4.38820 4.53779 4.77126 4.90455 5.06587 5.08154 5.28369 5.31680 5.48898 5.55353 5.59461 5.63982 5.67107 5.68563 5.76518 5.82085 5.85158 5.89374 6.02987 6.09866 6.21531 6.33438 6.54507 6.74609 7.09591 7.52854 7.58581 7.86603 8.21668 8.90972 9.51014 11.02290 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028905 B = 0.005631 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.459094 B = 4970.978188 C = 5373.014964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.390 4.390 3 H 0.113 0.887 4 C 0.043 3.957 5 C -0.539 4.539 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.273 1.273 13 S 1.274 4.726 14 O -0.843 6.843 15 C -0.476 4.476 16 H 0.096 0.904 17 C 0.087 3.913 18 O -0.374 6.374 19 C 0.105 3.895 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.113 4.113 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.023 0.977 27 H 0.027 0.973 28 H 0.264 0.736 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.684 6.849 15.621 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.509 4.509 3 H 0.131 0.869 4 C 0.005 3.995 5 C -0.578 4.578 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.198 1.198 13 S 1.471 4.529 14 O -0.838 6.838 15 C -0.589 4.589 16 H 0.115 0.885 17 C 0.010 3.990 18 O -0.294 6.294 19 C 0.064 3.936 20 C -0.209 4.209 21 C -0.213 4.213 22 C -0.151 4.151 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.106 6.167 15.623 16.832 hybrid contribution -1.386 -0.297 -0.606 1.542 sum -2.493 5.870 15.017 16.315 Atomic orbital electron populations 1.21878 0.95252 1.01753 1.01456 1.27426 0.99940 1.09533 1.13987 0.86906 1.18886 0.96014 0.95221 0.89357 1.21223 0.91497 1.35734 1.09306 0.91677 1.25029 0.98733 0.94745 0.95475 1.69960 1.36008 1.34808 1.11831 0.86656 0.85219 0.78480 0.77790 1.19718 1.21256 1.19846 1.70902 1.12286 0.84620 0.85107 1.93034 1.80302 1.26247 1.84242 1.29704 1.10088 1.06368 1.12759 0.88513 1.22968 1.01036 0.91232 0.83804 1.88379 1.93774 1.30676 1.16550 1.22028 0.95225 0.85445 0.90857 1.22070 0.96829 1.01921 1.00121 1.22120 0.97907 1.02166 0.99060 1.22823 1.02405 0.97811 0.92085 0.92847 0.93716 0.92097 0.95878 0.95426 0.92666 0.90592 0.89510 0.91720 0.92063 0.92358 0.91655 0.92044 0.91624 0.90070 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.96 37.16 0.33 -2.24 16 2 C -0.39 -7.46 2.64 -26.73 -0.07 -7.53 16 3 H 0.11 1.88 8.14 -51.93 -0.42 1.45 16 4 C 0.04 1.09 4.44 -27.88 -0.12 0.97 16 5 C -0.54 -14.06 8.53 -34.44 -0.29 -14.35 16 6 H 0.07 1.50 7.60 -52.48 -0.40 1.10 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 9 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 S 1.27 22.50 11.46 -107.50 -1.23 21.26 16 14 O -0.84 -19.84 18.07 -35.23 -0.64 -20.47 16 15 C -0.48 -6.64 2.95 -24.48 -0.07 -6.71 16 16 H 0.10 1.42 7.03 -51.93 -0.36 1.06 16 17 C 0.09 1.08 7.07 38.18 0.27 1.35 16 18 O -0.37 -4.98 10.68 -35.23 -0.38 -5.36 16 19 C 0.10 1.21 1.27 -89.89 -0.11 1.09 16 20 C -0.15 -1.59 8.73 37.16 0.32 -1.27 16 21 C -0.16 -1.47 8.75 37.16 0.33 -1.15 16 22 C -0.11 -1.40 5.58 -24.78 -0.14 -1.54 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.04 0.66 6.55 -51.93 -0.34 0.32 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.02 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.08 0.81 8.02 -51.92 -0.42 0.39 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.00 7.82 -51.93 -0.41 0.60 16 38 H 0.08 0.94 7.73 -51.93 -0.40 0.54 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -33.28 319.45 -7.91 -41.19 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.53 Total: -1.64 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 0.34 Total: -29.76 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.74 Total: -25.41 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.01 Total: -25.83 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 22.50 SS G_CDS: -1.23 Total: 21.26 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.28 -7.91 -41.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703066013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.087 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds