Wall clock time and date at job start Mon Mar 30 2020 05:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47394 * 2 1 4 4 C 1.52999 * 109.47251 * 240.00114 * 2 1 3 5 5 C 1.50702 * 109.47397 * 175.00237 * 4 2 1 6 6 H 1.08004 * 119.99868 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00493 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99340 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00210 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46941 * 60.00269 * 9 7 5 11 11 H 1.48497 * 109.47249 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47339 * 300.00220 * 9 7 5 13 13 S 1.81399 * 109.47054 * 120.00215 * 2 1 3 14 14 O 1.42102 * 109.47216 * 61.39050 * 13 2 1 15 15 C 1.81398 * 103.00088 * 305.00015 * 13 2 1 16 16 H 1.09003 * 110.98692 * 60.80183 * 15 13 2 17 17 C 1.54943 * 111.12658 * 296.55739 * 15 13 2 18 18 O 1.43648 * 105.14054 * 205.63738 * 17 15 13 19 19 C 1.43239 * 109.96505 * 24.42339 * 18 17 15 20 20 C 1.53007 * 109.82774 * 238.77586 * 19 18 17 21 21 C 1.53009 * 109.90256 * 117.84961 * 19 18 17 22 22 C 1.54380 * 107.59457 * 358.29493 * 19 18 17 23 23 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47070 * 300.00071 * 1 2 3 25 25 H 1.09002 * 109.47069 * 59.99674 * 1 2 3 26 26 H 1.08995 * 109.47278 * 295.00118 * 4 2 1 27 27 H 1.08997 * 109.46932 * 54.99972 * 4 2 1 28 28 H 0.97006 * 119.99531 * 180.02562 * 8 7 5 29 29 H 1.09008 * 110.30624 * 324.55024 * 17 15 13 30 30 H 1.08996 * 110.31022 * 86.72010 * 17 15 13 31 31 H 1.09005 * 109.46477 * 178.13904 * 20 19 18 32 32 H 1.08998 * 109.47212 * 298.13311 * 20 19 18 33 33 H 1.08999 * 109.47105 * 58.14101 * 20 19 18 34 34 H 1.08997 * 109.47065 * 301.82082 * 21 19 18 35 35 H 1.09002 * 109.46839 * 61.82075 * 21 19 18 36 36 H 1.08996 * 109.46716 * 181.81599 * 21 19 18 37 37 H 1.08996 * 110.84456 * 220.45379 * 22 19 18 38 38 H 1.08999 * 110.84893 * 96.82986 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2305 -1.1926 -2.3583 8 7 3.5764 -1.8369 -3.3000 9 14 6.0920 -1.0602 -2.4373 10 1 6.6845 -1.6865 -1.2281 11 1 6.5871 -1.7603 -3.6497 12 1 6.4845 0.3707 -2.4964 13 16 2.1346 -0.8552 1.4811 14 8 1.6877 -2.2040 1.4649 15 6 1.3148 0.0373 2.8309 16 1 0.2306 -0.0366 2.7459 17 6 1.7724 1.5168 2.8811 18 8 1.5816 1.9224 4.2458 19 6 1.6155 0.7773 5.1057 20 6 0.2993 0.6695 5.8784 21 6 2.7844 0.8963 6.0858 22 6 1.8037 -0.4696 4.2152 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.7517 -1.7714 -1.2056 27 1 1.6054 -0.2617 -2.1369 28 1 4.0608 -2.2436 -4.0355 29 1 2.8242 1.5970 2.6061 30 1 1.1592 2.1252 2.2163 31 1 0.3184 -0.2217 6.5059 32 1 0.1725 1.5523 6.5050 33 1 -0.5305 0.6008 5.1750 34 1 3.7171 0.9887 5.5295 35 1 2.6456 1.7781 6.7114 36 1 2.8230 0.0070 6.7149 37 1 1.1843 -1.2946 4.5670 38 1 2.8531 -0.7614 4.1730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703066013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:12 Heat of formation + Delta-G solvation = -128.416997 kcal Electronic energy + Delta-G solvation = -18307.758356 eV Core-core repulsion = 15468.290395 eV Total energy + Delta-G solvation = -2839.467961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62860 -36.80082 -36.37063 -34.18843 -33.98695 -32.84437 -29.46708 -28.19448 -26.75752 -25.31750 -23.25796 -22.28125 -20.99037 -18.49644 -18.30648 -17.82570 -16.96179 -16.50644 -16.30700 -15.89525 -14.99334 -14.89085 -14.75197 -14.43648 -14.19422 -13.98486 -13.71852 -13.61121 -13.31331 -13.14613 -13.07460 -12.81206 -12.57592 -12.53327 -12.38703 -12.28034 -11.92887 -11.87398 -11.63356 -11.49638 -11.18324 -10.70240 -10.48495 -10.42177 -9.04994 -8.16026 -6.29869 0.64513 1.50517 1.54677 1.60877 1.83396 2.47793 2.79335 2.98256 3.20244 3.46637 3.82278 3.92850 4.05361 4.11621 4.12856 4.24692 4.28918 4.39176 4.70944 4.73567 4.79097 4.79248 4.83997 4.94733 4.98177 5.00367 5.04683 5.05371 5.09563 5.31423 5.43472 5.44841 5.51975 5.80292 6.15428 6.18139 6.87727 7.42173 8.96706 Molecular weight = 260.12amu Principal moments of inertia in cm(-1) A = 0.028905 B = 0.005631 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.459094 B = 4970.978188 C = 5373.014964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.391 4.391 3 H 0.148 0.852 4 C 0.047 3.953 5 C -0.546 4.546 6 H 0.099 0.901 7 C -0.004 4.004 8 N -0.941 5.941 9 Si 0.963 3.037 10 H -0.256 1.256 11 H -0.295 1.295 12 H -0.252 1.252 13 S 1.300 4.700 14 O -0.911 6.911 15 C -0.459 4.459 16 H 0.090 0.910 17 C 0.083 3.917 18 O -0.386 6.386 19 C 0.102 3.898 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.120 4.120 23 H 0.024 0.976 24 H 0.079 0.921 25 H 0.064 0.936 26 H -0.029 1.029 27 H -0.001 1.001 28 H 0.262 0.738 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.155 9.025 17.995 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.509 4.509 3 H 0.166 0.834 4 C 0.009 3.991 5 C -0.584 4.584 6 H 0.117 0.883 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.787 3.213 10 H -0.180 1.180 11 H -0.221 1.221 12 H -0.176 1.176 13 S 1.500 4.500 14 O -0.907 6.907 15 C -0.576 4.576 16 H 0.109 0.891 17 C 0.006 3.994 18 O -0.306 6.306 19 C 0.062 3.938 20 C -0.211 4.211 21 C -0.212 4.212 22 C -0.158 4.158 23 H 0.043 0.957 24 H 0.098 0.902 25 H 0.083 0.917 26 H -0.011 1.011 27 H 0.017 0.983 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.431 8.342 17.983 19.828 hybrid contribution -1.973 -0.925 -1.239 2.507 sum -1.542 7.417 16.745 18.378 Atomic orbital electron populations 1.21868 0.94384 1.00504 1.03431 1.27368 1.00867 1.10678 1.11992 0.83393 1.18691 0.96428 0.92637 0.91341 1.21828 0.91988 1.34923 1.09629 0.88342 1.26137 1.04442 0.94415 0.95184 1.70151 1.38272 1.36697 1.12949 0.85514 0.78458 0.79518 0.77856 1.18010 1.22149 1.17595 1.69923 1.12388 0.82790 0.84873 1.92945 1.82030 1.30225 1.85474 1.29407 1.09381 1.07389 1.11472 0.89105 1.23175 1.02759 0.89450 0.84050 1.88376 1.94037 1.31376 1.16794 1.22177 0.96589 0.84208 0.90837 1.22106 0.95914 1.03019 1.00070 1.22133 0.97042 1.03177 0.98819 1.22983 1.03315 0.98472 0.91048 0.95718 0.90193 0.91673 1.01051 0.98301 0.92968 0.88236 0.88314 0.90269 0.91372 0.93586 0.91210 0.91575 0.90137 0.90294 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 8.96 71.98 0.65 -4.41 16 2 C -0.39 -14.72 2.64 30.59 0.08 -14.64 16 3 H 0.15 4.50 8.14 -2.39 -0.02 4.48 16 4 C 0.05 2.45 4.44 29.85 0.13 2.58 16 5 C -0.55 -28.41 8.53 25.60 0.22 -28.19 16 6 H 0.10 4.31 7.60 -2.91 -0.02 4.29 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 9 Si 0.96 41.31 29.54 68.60 2.03 43.34 16 10 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 11 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 13 S 1.30 44.79 11.46 -56.49 -0.65 44.14 16 14 O -0.91 -44.05 18.07 -148.98 -2.69 -46.75 16 15 C -0.46 -11.74 2.95 32.05 0.09 -11.64 16 16 H 0.09 2.48 7.03 -2.39 -0.02 2.47 16 17 C 0.08 1.74 7.07 72.65 0.51 2.26 16 18 O -0.39 -8.91 10.68 -148.98 -1.59 -10.51 16 19 C 0.10 2.03 1.27 -10.32 -0.01 2.02 16 20 C -0.15 -2.82 8.73 71.98 0.63 -2.20 16 21 C -0.15 -2.38 8.75 71.99 0.63 -1.75 16 22 C -0.12 -2.67 5.58 31.86 0.18 -2.49 16 23 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.08 2.22 6.55 -2.39 -0.02 2.20 16 25 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 26 H -0.03 -1.79 8.08 -2.39 -0.02 -1.81 16 27 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 29 H 0.10 1.65 8.02 -2.38 -0.02 1.63 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 1.81 7.82 -2.39 -0.02 1.79 16 38 H 0.10 1.92 7.73 -2.39 -0.02 1.91 16 Total: -1.00 -75.70 319.45 1.96 -73.75 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.01 Total: 11.43 kcal Atomic # 6 Polarization: -61.80 SS G_CDS: 3.57 Total: -58.23 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.28 Total: -57.18 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -4.28 Total: -57.25 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 44.79 SS G_CDS: -0.65 Total: 44.14 kcal Total: -75.70 1.96 -73.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703066013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.669 kcal (2) G-P(sol) polarization free energy of solvation -75.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds