Wall clock time and date at job start Mon Mar 30 2020 04:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.49674 * 111.00110 * 2 1 4 4 C 1.50251 * 104.76101 * 114.05783 * 3 2 1 5 5 H 1.09003 * 110.55317 * 279.45363 * 4 3 2 6 6 C 1.51041 * 125.93405 * 142.69537 * 4 3 2 7 7 N 1.49871 * 101.89781 * 204.88520 * 6 4 3 8 8 S 1.65597 * 126.20329 * 206.29942 * 7 6 4 9 9 O 1.42100 * 106.39775 * 23.51554 * 8 7 6 10 10 O 1.42094 * 106.40112 * 156.43261 * 8 7 6 11 11 C 1.76197 * 107.21863 * 269.97598 * 8 7 6 12 12 H 1.08005 * 120.00006 * 359.97438 * 11 8 7 13 13 C 1.37879 * 119.99839 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99587 * 179.97438 * 13 11 8 15 15 Si 1.86797 * 120.00192 * 0.02562 * 13 11 8 16 16 H 1.48504 * 109.47169 * 89.99718 * 15 13 11 17 17 H 1.48496 * 109.46916 * 209.99796 * 15 13 11 18 18 H 1.48499 * 109.46827 * 329.99729 * 15 13 11 19 19 C 1.49496 * 107.59629 * 26.27955 * 7 6 4 20 20 C 1.50310 * 104.56291 * 7.33471 * 19 7 6 21 21 H 1.08993 * 110.17155 * 79.64944 * 20 19 7 22 22 C 1.50161 * 111.00032 * 119.66395 * 2 1 3 23 23 H 1.08993 * 109.47206 * 300.33721 * 1 2 3 24 24 H 1.09001 * 109.47007 * 60.33735 * 1 2 3 25 25 H 1.08994 * 109.46892 * 180.33390 * 1 2 3 26 26 H 1.09003 * 110.37617 * 355.23094 * 3 2 1 27 27 H 1.08997 * 110.37988 * 232.88079 * 3 2 1 28 28 H 1.09003 * 110.94380 * 323.03321 * 6 4 3 29 29 H 1.08996 * 110.94834 * 86.73163 * 6 4 3 30 30 H 0.97003 * 119.99643 * 180.02562 * 14 13 11 31 31 H 1.08998 * 110.41571 * 248.55785 * 19 7 6 32 32 H 1.09006 * 110.41482 * 126.10595 * 19 7 6 33 33 H 1.08999 * 110.87852 * 94.80942 * 22 2 1 34 34 H 1.09007 * 111.05125 * 331.19666 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0054 1.3973 0.0000 4 6 2.6956 1.5424 1.3267 5 1 1.9712 1.7513 2.1140 6 6 3.9773 2.2999 1.5809 7 7 4.5011 1.6178 2.8083 8 16 5.4988 2.2864 3.9484 9 8 5.3163 3.6932 3.8658 10 8 5.2956 1.5452 5.1436 11 6 7.1562 1.9690 3.4417 12 1 7.3469 1.4239 2.5291 13 6 8.2097 2.4167 4.2103 14 7 9.4468 2.1794 3.8323 15 14 7.8800 3.3590 5.7891 16 1 7.7816 2.4055 6.9233 17 1 8.9915 4.3117 6.0383 18 1 6.6047 4.1089 5.6607 19 6 3.9592 0.2245 2.8171 20 6 3.2755 0.0765 1.4867 21 1 4.0100 -0.1246 0.7070 22 6 2.0071 -0.6938 1.2181 23 1 -0.3633 0.5190 0.8869 24 1 -0.3633 0.5086 -0.8930 25 1 -0.3633 -1.0276 0.0060 26 1 1.1908 2.1166 -0.0850 27 1 2.7171 1.5307 -0.8147 28 1 4.6694 2.1858 0.7465 29 1 3.7754 3.3530 1.7765 30 1 10.1880 2.4940 4.3732 31 1 3.2425 0.1005 3.6290 32 1 4.7699 -0.4982 2.9106 33 1 2.2261 -1.7400 1.0044 34 1 1.3152 -0.6069 2.0560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707007713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:11 Heat of formation + Delta-G solvation = -40.098983 kcal Electronic energy + Delta-G solvation = -18386.506576 eV Core-core repulsion = 15447.328028 eV Total energy + Delta-G solvation = -2939.178548 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.34732 -35.99919 -35.65246 -34.44516 -33.02682 -30.84850 -30.34553 -26.41138 -26.37974 -26.19319 -22.39582 -20.39099 -20.11066 -18.67955 -17.40201 -16.65987 -16.62436 -15.33281 -15.07354 -14.69517 -14.52763 -14.05149 -13.68483 -13.38663 -13.06365 -12.95501 -12.69964 -12.28998 -12.19096 -11.73214 -11.49274 -11.37136 -11.27317 -11.12608 -10.77252 -10.69935 -10.64184 -10.49191 -10.10187 -9.79875 -9.21173 -9.15716 -8.54559 -8.28929 -6.80399 -5.33753 1.93850 3.06339 3.17026 3.25784 3.75034 3.89253 3.94843 4.12705 4.58928 4.71215 5.01864 5.11026 5.18993 5.24386 5.31897 5.38326 5.44896 5.54879 5.62897 5.68030 5.68807 5.81502 5.86748 5.93993 6.04486 6.12296 6.29546 6.36574 6.61365 6.64946 6.86212 7.09380 7.49012 8.22452 8.70547 10.32178 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.048521 B = 0.005855 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.929379 B = 4781.162941 C = 4827.531848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.060 3.940 4 C -0.146 4.146 5 H 0.080 0.920 6 C 0.147 3.853 7 N -1.021 6.021 8 S 2.691 3.309 9 O -1.004 7.004 10 O -1.007 7.007 11 C -1.016 5.016 12 H 0.121 0.879 13 C 0.153 3.847 14 N -0.823 5.823 15 Si 0.801 3.199 16 H -0.246 1.246 17 H -0.254 1.254 18 H -0.220 1.220 19 C 0.149 3.851 20 C -0.129 4.129 21 H 0.094 0.906 22 C 0.060 3.940 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.281 0.719 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.253 -3.679 -6.707 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.255 5.255 3 C -0.068 4.068 4 C -0.167 4.167 5 H 0.099 0.901 6 C 0.021 3.979 7 N -0.858 5.858 8 S 2.795 3.205 9 O -0.995 6.995 10 O -0.997 6.997 11 C -1.150 5.150 12 H 0.139 0.861 13 C -0.067 4.067 14 N -0.453 5.453 15 Si 0.621 3.379 16 H -0.170 1.170 17 H -0.178 1.178 18 H -0.142 1.142 19 C 0.024 3.976 20 C -0.149 4.149 21 H 0.113 0.887 22 C -0.067 4.067 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.162 -3.437 -6.315 15.882 hybrid contribution 0.367 0.522 0.969 1.160 sum -13.795 -2.915 -5.347 15.079 Atomic orbital electron populations 1.22526 0.88061 1.01953 1.00599 1.65261 1.07905 1.13962 1.38343 1.22086 0.98970 0.89157 0.96561 1.22814 0.97715 0.97533 0.98669 0.90122 1.21117 0.92574 0.96536 0.87685 1.59945 1.65877 1.20953 1.39013 1.00947 0.75374 0.72581 0.71556 1.93453 1.87897 1.31670 1.86471 1.93399 1.87598 1.73393 1.45312 1.30557 1.12238 1.50701 1.21532 0.86113 1.24437 0.94318 0.91457 0.96464 1.69993 0.98827 1.39042 1.37389 0.87877 0.83234 0.82366 0.84441 1.16970 1.17795 1.14236 1.20726 0.97738 0.83628 0.95549 1.22464 0.97493 0.95748 0.99236 0.88735 1.22313 0.94534 0.98554 0.91309 0.95497 0.91367 0.91390 0.91790 0.89636 0.91104 0.89895 0.90899 0.91772 0.90664 0.89534 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.24 60.06 0.56 0.71 16 2 N -0.53 -5.76 5.58 -240.61 -1.34 -7.10 16 3 C 0.06 0.65 6.71 -3.64 -0.02 0.63 16 4 C -0.15 -1.92 2.97 -89.96 -0.27 -2.19 16 5 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 6 C 0.15 2.39 6.98 -3.15 -0.02 2.36 16 7 N -1.02 -20.32 3.82 -111.97 -0.43 -20.74 16 8 S 2.69 68.66 4.48 -107.50 -0.48 68.18 16 9 O -1.00 -27.23 15.45 -57.17 -0.88 -28.12 16 10 O -1.01 -27.30 16.46 -57.17 -0.94 -28.25 16 11 C -1.02 -28.83 10.29 30.60 0.31 -28.52 16 12 H 0.12 3.47 8.06 -52.48 -0.42 3.05 16 13 C 0.15 4.44 5.47 -17.82 -0.10 4.35 16 14 N -0.82 -24.04 13.96 55.43 0.77 -23.27 16 15 Si 0.80 20.78 26.54 -169.99 -4.51 16.27 16 16 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.25 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.22 -5.81 5.61 56.52 0.32 -5.50 16 19 C 0.15 2.45 6.93 -3.72 -0.03 2.42 16 20 C -0.13 -1.70 2.92 -90.05 -0.26 -1.96 16 21 H 0.09 1.28 8.13 -51.93 -0.42 0.85 16 22 C 0.06 0.66 6.55 -3.09 -0.02 0.64 16 23 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.35 7.88 -51.93 -0.41 0.94 16 30 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.56 7.88 -51.93 -0.41 0.15 16 LS Contribution 285.31 15.07 4.30 4.30 Total: -1.00 -32.85 285.31 -8.45 -41.29 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.08 Total: -1.01 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 0.15 Total: -21.56 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -1.00 Total: -51.11 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -1.82 Total: -56.36 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.51 Total: 16.27 kcal Atomic # 16 Polarization: 68.66 SS G_CDS: -0.48 Total: 68.18 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.85 -8.45 -41.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707007713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.194 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds