Wall clock time and date at job start Mon Mar 30 2020 04:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.49674 * 111.00110 * 2 1 4 4 C 1.50251 * 104.76101 * 114.05783 * 3 2 1 5 5 H 1.09003 * 110.55317 * 279.45363 * 4 3 2 6 6 C 1.51041 * 125.93405 * 142.69537 * 4 3 2 7 7 N 1.49871 * 101.89781 * 204.88520 * 6 4 3 8 8 S 1.65597 * 126.20329 * 206.29942 * 7 6 4 9 9 O 1.42100 * 106.39775 * 23.51554 * 8 7 6 10 10 O 1.42094 * 106.40112 * 156.43261 * 8 7 6 11 11 C 1.76197 * 107.21863 * 269.97598 * 8 7 6 12 12 H 1.08005 * 120.00006 * 359.97438 * 11 8 7 13 13 C 1.37879 * 119.99839 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99587 * 179.97438 * 13 11 8 15 15 Si 1.86797 * 120.00192 * 0.02562 * 13 11 8 16 16 H 1.48504 * 109.47169 * 89.99718 * 15 13 11 17 17 H 1.48496 * 109.46916 * 209.99796 * 15 13 11 18 18 H 1.48499 * 109.46827 * 329.99729 * 15 13 11 19 19 C 1.49496 * 107.59629 * 26.27955 * 7 6 4 20 20 C 1.50310 * 104.56291 * 7.33471 * 19 7 6 21 21 H 1.08993 * 110.17155 * 79.64944 * 20 19 7 22 22 C 1.50161 * 111.00032 * 119.66395 * 2 1 3 23 23 H 1.08993 * 109.47206 * 300.33721 * 1 2 3 24 24 H 1.09001 * 109.47007 * 60.33735 * 1 2 3 25 25 H 1.08994 * 109.46892 * 180.33390 * 1 2 3 26 26 H 1.09003 * 110.37617 * 355.23094 * 3 2 1 27 27 H 1.08997 * 110.37988 * 232.88079 * 3 2 1 28 28 H 1.09003 * 110.94380 * 323.03321 * 6 4 3 29 29 H 1.08996 * 110.94834 * 86.73163 * 6 4 3 30 30 H 0.97003 * 119.99643 * 180.02562 * 14 13 11 31 31 H 1.08998 * 110.41571 * 248.55785 * 19 7 6 32 32 H 1.09006 * 110.41482 * 126.10595 * 19 7 6 33 33 H 1.08999 * 110.87852 * 94.80942 * 22 2 1 34 34 H 1.09007 * 111.05125 * 331.19666 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0054 1.3973 0.0000 4 6 2.6956 1.5424 1.3267 5 1 1.9712 1.7513 2.1140 6 6 3.9773 2.2999 1.5809 7 7 4.5011 1.6178 2.8083 8 16 5.4988 2.2864 3.9484 9 8 5.3163 3.6932 3.8658 10 8 5.2956 1.5452 5.1436 11 6 7.1562 1.9690 3.4417 12 1 7.3469 1.4239 2.5291 13 6 8.2097 2.4167 4.2103 14 7 9.4468 2.1794 3.8323 15 14 7.8800 3.3590 5.7891 16 1 7.7816 2.4055 6.9233 17 1 8.9915 4.3117 6.0383 18 1 6.6047 4.1089 5.6607 19 6 3.9592 0.2245 2.8171 20 6 3.2755 0.0765 1.4867 21 1 4.0100 -0.1246 0.7070 22 6 2.0071 -0.6938 1.2181 23 1 -0.3633 0.5190 0.8869 24 1 -0.3633 0.5086 -0.8930 25 1 -0.3633 -1.0276 0.0060 26 1 1.1908 2.1166 -0.0850 27 1 2.7171 1.5307 -0.8147 28 1 4.6694 2.1858 0.7465 29 1 3.7754 3.3530 1.7765 30 1 10.1880 2.4940 4.3732 31 1 3.2425 0.1005 3.6290 32 1 4.7699 -0.4982 2.9106 33 1 2.2261 -1.7400 1.0044 34 1 1.3152 -0.6069 2.0560 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707007713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:11 Heat of formation + Delta-G solvation = -67.070929 kcal Electronic energy + Delta-G solvation = -18387.676167 eV Core-core repulsion = 15447.328028 eV Total energy + Delta-G solvation = -2940.348139 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41189 -37.75034 -37.12324 -36.55301 -35.22206 -31.97167 -31.42476 -28.58637 -27.50442 -27.21951 -23.46378 -21.50116 -21.13028 -20.69537 -19.34149 -18.55530 -17.82878 -17.17295 -16.30406 -16.09995 -15.86270 -15.37512 -15.22217 -15.00166 -14.74066 -14.18741 -14.13471 -13.54935 -13.49123 -13.35397 -13.09482 -12.78583 -12.71386 -12.62312 -12.47704 -12.32612 -12.06082 -11.80146 -11.76136 -11.37384 -11.25786 -11.09695 -9.91864 -9.33046 -9.00149 -7.56595 0.00440 1.01714 1.11268 1.18070 1.85946 2.34897 2.38529 2.80762 2.93007 3.32405 3.72612 3.95298 4.01439 4.03723 4.27970 4.33416 4.40752 4.55748 4.56732 4.63715 4.65745 4.75846 4.80891 4.95416 5.04683 5.08599 5.10118 5.20866 5.33246 5.39270 5.49054 5.79508 5.97531 6.08671 6.49479 8.17998 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.048521 B = 0.005855 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.929379 B = 4781.162941 C = 4827.531848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.538 5.538 3 C 0.065 3.935 4 C -0.135 4.135 5 H 0.080 0.920 6 C 0.136 3.864 7 N -1.026 6.026 8 S 2.714 3.286 9 O -1.024 7.024 10 O -1.026 7.026 11 C -1.041 5.041 12 H 0.102 0.898 13 C 0.107 3.893 14 N -0.853 5.853 15 Si 0.825 3.175 16 H -0.238 1.238 17 H -0.216 1.216 18 H -0.230 1.230 19 C 0.139 3.861 20 C -0.121 4.121 21 H 0.091 0.909 22 C 0.066 3.934 23 H 0.028 0.972 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.292 0.708 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.019 -3.864 -7.152 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.263 5.263 3 C -0.063 4.063 4 C -0.156 4.156 5 H 0.099 0.901 6 C 0.012 3.988 7 N -0.867 5.867 8 S 2.816 3.184 9 O -1.014 7.014 10 O -1.016 7.016 11 C -1.173 5.173 12 H 0.121 0.879 13 C -0.109 4.109 14 N -0.484 5.484 15 Si 0.642 3.358 16 H -0.161 1.161 17 H -0.138 1.138 18 H -0.152 1.152 19 C 0.015 3.985 20 C -0.142 4.142 21 H 0.109 0.891 22 C -0.061 4.061 23 H 0.047 0.953 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.894 -3.622 -6.765 17.649 hybrid contribution 0.870 0.515 1.008 1.428 sum -15.024 -3.106 -5.756 16.386 Atomic orbital electron populations 1.22605 0.86558 1.02860 1.01218 1.65290 1.09359 1.13579 1.38034 1.22115 0.99387 0.89856 0.94943 1.22722 0.96215 0.96402 1.00304 0.90114 1.21383 0.94453 0.96650 0.86354 1.59616 1.64745 1.22926 1.39394 1.00003 0.74492 0.72069 0.71799 1.93416 1.87974 1.32942 1.87090 1.93361 1.87666 1.73708 1.46903 1.31091 1.14762 1.50433 1.21029 0.87947 1.25197 0.94463 0.92300 0.98977 1.70015 0.99579 1.39979 1.38793 0.87495 0.84099 0.82416 0.81837 1.16086 1.13774 1.15210 1.20980 0.98057 0.81489 0.98023 1.22372 0.98302 0.96575 0.96906 0.89070 1.22337 0.93153 0.98875 0.91781 0.95298 0.90308 0.90417 0.90049 0.89357 0.90368 0.90195 0.89742 0.90818 0.91197 0.88310 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.24 127.69 1.18 1.40 16 2 N -0.54 -9.98 5.58 -915.15 -5.11 -15.09 16 3 C 0.06 1.22 6.71 84.87 0.57 1.79 16 4 C -0.14 -3.28 2.97 -10.37 -0.03 -3.31 16 5 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 6 C 0.14 4.32 6.98 85.08 0.59 4.91 16 7 N -1.03 -40.61 3.82 -508.17 -1.94 -42.55 16 8 S 2.71 139.22 4.48 -56.49 -0.25 138.97 16 9 O -1.02 -55.63 15.45 -128.00 -1.98 -57.61 16 10 O -1.03 -55.69 16.46 -128.00 -2.11 -57.80 16 11 C -1.04 -60.32 10.29 67.73 0.70 -59.62 16 12 H 0.10 6.11 8.06 -2.91 -0.02 6.08 16 13 C 0.11 6.30 5.47 84.66 0.46 6.77 16 14 N -0.85 -50.28 13.96 21.45 0.30 -49.98 16 15 Si 0.82 41.69 26.54 68.60 1.82 43.51 16 16 H -0.24 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.22 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.23 -11.93 5.61 99.48 0.56 -11.37 16 19 C 0.14 4.45 6.93 84.93 0.59 5.04 16 20 C -0.12 -2.97 2.92 -10.42 -0.03 -3.00 16 21 H 0.09 2.32 8.13 -2.39 -0.02 2.30 16 22 C 0.07 1.26 6.55 84.95 0.56 1.81 16 23 H 0.03 0.40 8.12 -2.39 -0.02 0.38 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 1.28 7.65 -2.39 -0.02 1.26 16 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.08 2.57 7.88 -2.39 -0.02 2.55 16 30 H 0.29 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.09 7.88 -2.38 -0.02 1.07 16 Total: -1.00 -69.94 285.31 -3.75 -73.69 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.93 Total: 11.05 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 4.59 Total: -44.20 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -6.75 Total: -107.61 kcal Atomic # 8 Polarization: -111.32 SS G_CDS: -4.08 Total: -115.41 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.82 Total: 43.51 kcal Atomic # 16 Polarization: 139.22 SS G_CDS: -0.25 Total: 138.97 kcal Total: -69.94 -3.75 -73.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707007713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.617 kcal (2) G-P(sol) polarization free energy of solvation -69.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds