Wall clock time and date at job start Mon Mar 30 2020 04:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99922 * 2 1 4 4 H 1.48503 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47006 * 299.99875 * 3 2 1 6 6 H 1.48500 * 109.46912 * 59.99745 * 3 2 1 7 7 C 1.38805 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00027 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99895 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46928 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00077 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99661 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99664 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.57027 * 324.83343 * 14 13 11 16 16 C 1.53114 * 109.52537 * 84.99627 * 14 13 11 17 17 C 1.53037 * 109.31211 * 62.23025 * 16 14 13 18 18 N 1.46929 * 109.47910 * 59.15772 * 17 16 14 19 19 C 1.46850 * 111.22205 * 298.28247 * 18 17 16 20 20 C 1.53037 * 109.52028 * 61.74456 * 19 18 17 21 21 H 1.09006 * 109.50306 * 60.75855 * 20 19 18 22 22 O 1.42900 * 109.50527 * 180.88013 * 20 19 18 23 23 H 0.96997 * 120.00186 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47319 * 60.00291 * 10 9 7 25 25 H 1.09004 * 109.47266 * 299.99671 * 10 9 7 26 26 H 0.97003 * 120.00254 * 359.97438 * 13 11 10 27 27 H 1.09002 * 109.50377 * 182.19149 * 16 14 13 28 28 H 1.09003 * 109.50316 * 302.27145 * 16 14 13 29 29 H 1.08994 * 109.46612 * 179.21753 * 17 16 14 30 30 H 1.09007 * 109.46083 * 299.18512 * 17 16 14 31 31 H 1.00903 * 110.98569 * 174.17975 * 18 17 16 32 32 H 1.08997 * 109.46198 * 301.72747 * 19 18 17 33 33 H 1.08999 * 109.45191 * 181.75464 * 19 18 17 34 34 H 0.96705 * 113.99208 * 299.80353 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7913 -5.5023 0.0038 13 7 2.8444 -6.3430 0.0049 14 6 2.3306 -7.7150 0.0061 15 1 1.4161 -7.7620 0.5973 16 6 2.0338 -8.1516 -1.4312 17 6 3.3321 -8.1418 -2.2414 18 7 4.3025 -9.0554 -1.6230 19 6 4.6389 -8.6293 -0.2585 20 6 3.3792 -8.6534 0.6100 21 1 2.9817 -9.6678 0.6466 22 8 3.7029 -8.2191 1.9324 23 1 -0.4850 0.8400 -0.0004 24 1 3.1246 -3.7305 0.8928 25 1 3.1246 -3.7321 -0.8872 26 1 3.8012 -6.1834 0.0051 27 1 1.6152 -9.1580 -1.4267 28 1 1.3191 -7.4621 -1.8807 29 1 3.1260 -8.4656 -3.2616 30 1 3.7429 -7.1322 -2.2570 31 1 5.1325 -9.1392 -2.1906 32 1 5.0436 -7.6175 -0.2834 33 1 5.3822 -9.3075 0.1607 34 1 4.3629 -8.7691 2.3764 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710463237.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:35 Heat of formation + Delta-G solvation = -87.396557 kcal Electronic energy + Delta-G solvation = -17562.836604 eV Core-core repulsion = 14621.607080 eV Total energy + Delta-G solvation = -2941.229524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.19847 -38.18467 -36.07724 -33.97634 -32.41304 -31.19017 -29.89681 -28.38810 -25.47313 -23.93850 -23.06731 -21.00060 -19.15055 -17.92839 -17.71766 -16.80754 -16.06082 -15.90151 -15.29953 -14.99364 -14.79160 -14.23138 -14.09349 -13.80846 -13.39955 -13.07405 -12.75022 -12.61077 -12.31427 -11.93664 -11.66825 -11.28673 -11.05936 -11.00128 -10.77262 -10.61371 -10.29118 -9.78277 -9.32827 -9.06276 -8.94054 -8.71093 -8.20504 -6.47435 -6.20178 -3.90182 3.06312 3.15933 3.22440 3.29259 3.34218 3.62683 3.79013 4.06764 4.21998 4.47255 4.56777 4.84763 4.95076 4.98358 5.15021 5.15646 5.25754 5.43288 5.49269 5.62024 5.67127 5.74528 5.92285 5.99892 6.02430 6.17242 6.57030 6.71538 6.95362 7.38515 7.61398 7.76941 8.37041 8.68031 9.25249 10.87360 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.037509 B = 0.004251 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.301958 B = 6585.524249 C = 6633.912566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.519 6.519 13 N -0.725 5.725 14 C 0.154 3.846 15 H 0.095 0.905 16 C -0.127 4.127 17 C 0.054 3.946 18 N -0.686 5.686 19 C 0.025 3.975 20 C 0.100 3.900 21 H 0.076 0.924 22 O -0.556 6.556 23 H 0.268 0.732 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.395 0.605 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.346 0.654 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.442 -18.584 -1.735 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.393 6.393 13 N -0.379 5.379 14 C 0.049 3.951 15 H 0.113 0.887 16 C -0.167 4.167 17 C -0.075 4.075 18 N -0.318 5.318 19 C -0.105 4.105 20 C 0.040 3.960 21 H 0.094 0.906 22 O -0.360 6.360 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.229 0.771 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.164 0.836 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 8.343 -18.783 -1.652 20.619 hybrid contribution 3.511 1.672 -0.072 3.890 sum 11.854 -17.111 -1.724 20.887 Atomic orbital electron populations 1.70028 1.05949 1.27315 1.47011 1.24988 0.95015 0.99005 0.94562 0.86121 0.79570 0.81916 0.77897 1.19656 1.20570 1.20552 1.22916 0.94936 0.91715 1.58760 0.90944 1.85382 1.04951 0.96249 1.96688 1.23524 1.06510 0.95546 1.04741 1.20272 0.86552 0.86243 0.74928 1.90688 1.15317 1.85554 1.47743 1.45950 1.09685 1.04929 1.77350 1.20878 0.97200 0.81080 0.95980 0.88703 1.21978 0.97393 1.02669 0.94613 1.21983 0.92914 0.94447 0.98114 1.60267 1.17135 1.51550 1.02890 1.22644 0.97756 0.99487 0.90642 1.22064 0.93998 0.97812 0.82107 0.90634 1.86660 1.64113 1.57761 1.27483 0.92252 0.89299 0.89507 0.77100 0.90182 0.89748 0.90311 0.94460 0.83643 0.94288 0.90389 0.77633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.44 13.22 55.49 0.73 -25.70 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.48 9.50 30.94 0.29 -15.18 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.20 6.16 36.01 0.22 -2.97 16 11 C 0.53 10.38 7.81 -10.98 -0.09 10.30 16 12 O -0.52 -12.05 15.53 5.56 0.09 -11.96 16 13 N -0.72 -10.47 4.17 -53.68 -0.22 -10.69 16 14 C 0.15 1.97 2.51 -67.80 -0.17 1.80 16 15 H 0.09 1.46 7.59 -51.93 -0.39 1.06 16 16 C -0.13 -1.45 5.76 -26.65 -0.15 -1.60 16 17 C 0.05 0.52 6.41 -3.79 -0.02 0.49 16 18 N -0.69 -5.44 6.85 -113.75 -0.78 -6.22 16 19 C 0.02 0.19 6.02 -3.83 -0.02 0.17 16 20 C 0.10 0.96 3.35 -26.65 -0.09 0.87 16 21 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 22 O -0.56 -5.64 13.14 -35.23 -0.46 -6.10 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 25 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 26 H 0.39 4.89 7.01 -40.82 -0.29 4.60 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.39 7.69 -51.92 -0.40 -0.01 16 31 H 0.35 2.15 8.90 -39.29 -0.35 1.80 16 32 H 0.04 0.33 6.64 -51.93 -0.34 -0.02 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.38 2.00 9.08 45.56 0.41 2.42 16 LS Contribution 297.39 15.07 4.48 4.48 Total: -1.00 -35.24 297.39 -7.39 -42.63 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.86 Total: 4.93 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.13 Total: -4.10 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.27 Total: -42.61 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.38 Total: -18.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.24 -7.39 -42.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710463237.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.764 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds