Wall clock time and date at job start Mon Mar 30 2020 04:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99922 * 2 1 4 4 H 1.48503 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47006 * 299.99875 * 3 2 1 6 6 H 1.48500 * 109.46912 * 59.99745 * 3 2 1 7 7 C 1.38805 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00027 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99895 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46928 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00077 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99661 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99664 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.57027 * 324.83343 * 14 13 11 16 16 C 1.53114 * 109.52537 * 84.99627 * 14 13 11 17 17 C 1.53037 * 109.31211 * 62.23025 * 16 14 13 18 18 N 1.46929 * 109.47910 * 59.15772 * 17 16 14 19 19 C 1.46850 * 111.22205 * 298.28247 * 18 17 16 20 20 C 1.53037 * 109.52028 * 61.74456 * 19 18 17 21 21 H 1.09006 * 109.50306 * 60.75855 * 20 19 18 22 22 O 1.42900 * 109.50527 * 180.88013 * 20 19 18 23 23 H 0.96997 * 120.00186 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47319 * 60.00291 * 10 9 7 25 25 H 1.09004 * 109.47266 * 299.99671 * 10 9 7 26 26 H 0.97003 * 120.00254 * 359.97438 * 13 11 10 27 27 H 1.09002 * 109.50377 * 182.19149 * 16 14 13 28 28 H 1.09003 * 109.50316 * 302.27145 * 16 14 13 29 29 H 1.08994 * 109.46612 * 179.21753 * 17 16 14 30 30 H 1.09007 * 109.46083 * 299.18512 * 17 16 14 31 31 H 1.00903 * 110.98569 * 174.17975 * 18 17 16 32 32 H 1.08997 * 109.46198 * 301.72747 * 19 18 17 33 33 H 1.08999 * 109.45191 * 181.75464 * 19 18 17 34 34 H 0.96705 * 113.99208 * 299.80353 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0019 10 6 2.5160 -3.8913 0.0029 11 6 1.9875 -5.3027 0.0036 12 8 0.7913 -5.5023 0.0038 13 7 2.8444 -6.3430 0.0049 14 6 2.3306 -7.7150 0.0061 15 1 1.4161 -7.7620 0.5973 16 6 2.0338 -8.1516 -1.4312 17 6 3.3321 -8.1418 -2.2414 18 7 4.3025 -9.0554 -1.6230 19 6 4.6389 -8.6293 -0.2585 20 6 3.3792 -8.6534 0.6100 21 1 2.9817 -9.6678 0.6466 22 8 3.7029 -8.2191 1.9324 23 1 -0.4850 0.8400 -0.0004 24 1 3.1246 -3.7305 0.8928 25 1 3.1246 -3.7321 -0.8872 26 1 3.8012 -6.1834 0.0051 27 1 1.6152 -9.1580 -1.4267 28 1 1.3191 -7.4621 -1.8807 29 1 3.1260 -8.4656 -3.2616 30 1 3.7429 -7.1322 -2.2570 31 1 5.1325 -9.1392 -2.1906 32 1 5.0436 -7.6175 -0.2834 33 1 5.3822 -9.3075 0.1607 34 1 4.3629 -8.7691 2.3764 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710463237.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:35 Heat of formation + Delta-G solvation = -118.249907 kcal Electronic energy + Delta-G solvation = -17564.174506 eV Core-core repulsion = 14621.607080 eV Total energy + Delta-G solvation = -2942.567426 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.32905 -39.43996 -36.83828 -35.18667 -34.59940 -32.36868 -30.84420 -29.73229 -27.67687 -24.78789 -23.86219 -22.34025 -20.23856 -19.90875 -18.48454 -18.10511 -17.19485 -17.05244 -16.89433 -16.57202 -15.93201 -15.79479 -15.26713 -14.95171 -14.69668 -14.44053 -14.00985 -13.72333 -13.55660 -13.17794 -13.11340 -12.92112 -12.65637 -12.52764 -12.16954 -11.74567 -11.46048 -11.17114 -11.06701 -10.90795 -10.29905 -10.15278 -9.46011 -8.68768 -8.36136 -6.14634 1.25051 1.40696 1.45470 1.57045 1.59501 2.23335 2.26972 2.97588 2.98081 3.30091 3.34438 3.70544 3.79639 3.93417 4.06022 4.16633 4.25214 4.25559 4.42563 4.46560 4.66795 4.73808 4.81511 4.90802 5.03648 5.10207 5.40315 5.47374 5.89962 6.18510 6.41268 6.46078 6.88527 7.05041 7.21510 8.73538 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.037509 B = 0.004251 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.301958 B = 6585.524249 C = 6633.912566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.699 5.699 14 C 0.146 3.854 15 H 0.063 0.937 16 C -0.123 4.123 17 C 0.060 3.940 18 N -0.682 5.682 19 C 0.029 3.971 20 C 0.109 3.891 21 H 0.089 0.911 22 O -0.578 6.578 23 H 0.272 0.728 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.409 0.591 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.360 0.640 32 H 0.035 0.965 33 H 0.107 0.893 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.475 -19.356 -1.903 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.280 4.280 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.353 5.353 14 C 0.041 3.959 15 H 0.081 0.919 16 C -0.162 4.162 17 C -0.069 4.069 18 N -0.316 5.316 19 C -0.101 4.101 20 C 0.049 3.951 21 H 0.106 0.894 22 O -0.386 6.386 23 H 0.081 0.919 24 H 0.123 0.877 25 H 0.126 0.874 26 H 0.246 0.754 27 H 0.112 0.888 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.180 0.820 32 H 0.054 0.946 33 H 0.125 0.875 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 11.448 -19.610 -1.818 22.780 hybrid contribution 2.597 1.761 0.009 3.138 sum 14.045 -17.849 -1.809 22.785 Atomic orbital electron populations 1.70186 1.08006 1.28610 1.47983 1.26137 0.95965 1.03320 0.93633 0.84888 0.78543 0.76223 0.78161 1.18093 1.19766 1.19867 1.23237 0.95320 0.92020 1.58966 0.90029 1.85562 1.10358 0.99132 1.97027 1.23355 1.03622 0.94571 1.06417 1.20052 0.86295 0.86646 0.74969 1.90676 1.17270 1.86031 1.50307 1.45709 1.09777 1.04743 1.75044 1.21087 0.97371 0.80532 0.96930 0.91898 1.21896 0.98140 1.02525 0.93671 1.21886 0.92173 0.94434 0.98457 1.60222 1.17603 1.50630 1.03140 1.22643 0.97095 1.00156 0.90198 1.21952 0.93941 0.96908 0.82312 0.89352 1.86603 1.65272 1.58906 1.27797 0.91932 0.87741 0.87408 0.75448 0.88789 0.92658 0.89099 0.95469 0.82009 0.94647 0.87498 0.75055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 44.04 29.55 68.60 2.03 46.07 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.87 9.50 67.96 0.65 -31.22 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.13 -5.36 6.16 71.24 0.44 -4.92 16 11 C 0.53 21.03 7.81 87.66 0.68 21.72 16 12 O -0.56 -27.37 15.53 -3.01 -0.05 -27.42 16 13 N -0.70 -19.69 4.17 -442.14 -1.84 -21.54 16 14 C 0.15 3.66 2.51 45.07 0.11 3.77 16 15 H 0.06 2.00 7.59 -2.39 -0.02 1.98 16 16 C -0.12 -2.74 5.76 30.64 0.18 -2.56 16 17 C 0.06 1.02 6.41 86.31 0.55 1.57 16 18 N -0.68 -8.59 6.85 -513.81 -3.52 -12.11 16 19 C 0.03 0.35 6.02 86.33 0.52 0.87 16 20 C 0.11 1.83 3.35 30.65 0.10 1.94 16 21 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 22 O -0.58 -10.39 13.14 -148.98 -1.96 -12.35 16 23 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 24 H 0.10 4.03 8.14 -2.40 -0.02 4.01 16 25 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 26 H 0.41 9.32 7.01 -92.71 -0.65 8.67 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.03 0.52 7.69 -2.38 -0.02 0.50 16 31 H 0.36 3.14 8.90 -89.69 -0.80 2.34 16 32 H 0.04 0.47 6.64 -2.39 -0.02 0.45 16 33 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.40 3.03 9.08 -74.05 -0.67 2.36 16 Total: -1.00 -78.85 297.39 -3.50 -82.35 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.98 Total: 18.51 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 3.70 Total: -7.55 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -5.08 Total: -90.00 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -2.00 Total: -39.77 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -78.85 -3.50 -82.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710463237.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.899 kcal (2) G-P(sol) polarization free energy of solvation -78.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds