Wall clock time and date at job start Mon Mar 30 2020 04:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86792 * 120.00126 * 2 1 4 4 H 1.48495 * 109.47321 * 275.41111 * 3 2 1 5 5 H 1.48504 * 109.47315 * 35.41299 * 3 2 1 6 6 H 1.48506 * 109.47228 * 155.41127 * 3 2 1 7 7 C 1.39927 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00369 * 341.71965 * 7 2 1 9 9 C 1.41201 * 120.00110 * 161.71735 * 7 2 1 10 10 C 1.40840 * 120.17065 * 330.16736 * 9 7 2 11 11 C 1.36426 * 119.81879 * 179.69680 * 10 9 7 12 12 C 1.39369 * 120.17449 * 0.28193 * 11 10 9 13 13 N 1.39734 * 119.82211 * 179.97438 * 12 11 10 14 14 C 1.36689 * 127.16966 * 294.68365 * 13 12 11 15 15 O 1.35524 * 126.47215 * 359.97438 * 14 13 12 16 16 N 1.31024 * 107.05469 * 179.83539 * 14 13 12 17 17 N 1.28522 * 109.94470 * 0.44080 * 16 14 13 18 18 C 1.30326 * 110.09081 * 359.72048 * 17 16 14 19 19 C 1.50705 * 126.37093 * 179.97438 * 18 17 16 20 20 N 1.46901 * 109.46974 * 270.03675 * 19 18 17 21 21 C 1.39365 * 120.35527 * 0.02562 * 12 11 10 22 22 C 1.36426 * 120.17927 * 359.97438 * 21 12 11 23 23 H 0.97003 * 120.00198 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.09093 * 359.97438 * 10 9 7 25 25 H 1.07998 * 119.91308 * 180.25114 * 11 10 9 26 26 H 0.96700 * 114.00074 * 90.00340 * 15 14 13 27 27 H 1.09003 * 109.47453 * 30.03945 * 19 18 17 28 28 H 1.09001 * 109.46906 * 150.04130 * 19 18 17 29 29 H 1.00899 * 111.00035 * 180.02562 * 20 19 18 30 30 H 1.00901 * 110.99963 * 303.95580 * 20 19 18 31 31 H 1.08007 * 119.90874 * 179.97438 * 21 12 11 32 32 H 1.08004 * 120.08674 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3757 2.1124 -1.3938 5 1 1.5019 2.6169 0.8113 6 1 3.5926 1.4098 0.5826 7 6 2.0081 -1.2118 0.0005 8 1 1.5090 -2.1234 0.2943 9 6 3.3666 -1.2430 -0.3831 10 6 3.8601 -0.3110 -1.3166 11 6 5.1754 -0.3437 -1.6774 12 6 6.0286 -1.2996 -1.1293 13 7 7.3743 -1.3267 -1.5045 14 6 7.8810 -1.6078 -2.7426 15 8 7.1688 -1.9173 -3.8532 16 7 9.1852 -1.5185 -2.6534 17 7 9.5225 -1.2126 -1.4515 18 6 8.4603 -1.0832 -0.7076 19 6 8.4328 -0.7315 0.7576 20 7 8.4879 -1.9622 1.5577 21 6 5.5466 -2.2294 -0.2098 22 6 4.2339 -2.2099 0.1613 23 1 -0.4850 0.8401 -0.0004 24 1 3.2001 0.4304 -1.7423 25 1 5.5563 0.3729 -2.3901 26 1 6.9200 -1.1505 -4.3873 27 1 9.2912 -0.1038 0.9968 28 1 7.5135 -0.1915 0.9844 29 1 8.4703 -1.7530 2.5446 30 1 7.7382 -2.5897 1.3080 31 1 6.2141 -2.9673 0.2102 32 1 3.8619 -2.9314 0.8737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711218227.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:44 Heat of formation + Delta-G solvation = 63.525434 kcal Electronic energy + Delta-G solvation = -19060.232633 eV Core-core repulsion = 16022.396377 eV Total energy + Delta-G solvation = -3037.836256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.73073 -38.42238 -37.37154 -35.19827 -34.41314 -33.34368 -30.39959 -30.06039 -29.49721 -25.77942 -25.03536 -22.43313 -22.28443 -21.22475 -20.34087 -18.60049 -17.94033 -17.25192 -16.26186 -16.09676 -15.68133 -14.64245 -14.43178 -14.26587 -13.97630 -13.65922 -13.32629 -13.01599 -12.81916 -12.43279 -12.34095 -11.94121 -11.58364 -11.32900 -11.16678 -10.76808 -10.49793 -10.27873 -10.10180 -9.80289 -9.44828 -8.89555 -8.66800 -8.33139 -7.98163 -7.40535 -4.94533 1.69687 2.13472 2.27348 2.58596 2.80318 2.93150 2.99796 3.01921 3.61322 3.97472 4.10608 4.58121 4.70563 4.90710 5.12389 5.47672 5.52881 5.56448 5.81085 6.00819 6.07129 6.17484 6.32220 6.37890 6.54093 6.75319 6.93983 6.97500 7.17411 7.18753 7.35387 7.38121 7.55882 7.80550 7.88764 8.18062 8.31179 8.97140 9.59112 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.006389 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.549306 B = 4381.426443 C = 4710.468739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.080 3.920 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.419 4.419 8 H 0.099 0.901 9 C 0.098 3.902 10 C -0.231 4.231 11 C -0.046 4.046 12 C -0.070 4.070 13 N -0.392 5.392 14 C 0.341 3.659 15 O -0.433 6.433 16 N -0.298 5.298 17 N -0.274 5.274 18 C 0.183 3.817 19 C 0.155 3.845 20 N -0.841 5.841 21 C -0.055 4.055 22 C -0.200 4.200 23 H 0.293 0.707 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.399 0.601 27 H 0.104 0.896 28 H 0.054 0.946 29 H 0.349 0.651 30 H 0.342 0.658 31 H 0.099 0.901 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 2.614 1.257 6.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.446 4.446 8 H 0.117 0.883 9 C 0.094 3.906 10 C -0.250 4.250 11 C -0.066 4.066 12 C -0.161 4.161 13 N -0.087 5.087 14 C 0.038 3.962 15 O -0.231 6.231 16 N -0.150 5.150 17 N -0.118 5.118 18 C -0.084 4.084 19 C 0.022 3.978 20 N -0.373 5.373 21 C -0.075 4.075 22 C -0.219 4.219 23 H 0.104 0.896 24 H 0.127 0.873 25 H 0.114 0.886 26 H 0.255 0.745 27 H 0.122 0.878 28 H 0.072 0.928 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.117 0.883 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.461 1.953 0.584 7.735 hybrid contribution -2.418 1.417 0.233 2.812 sum 5.044 3.370 0.816 6.121 Atomic orbital electron populations 1.69684 1.08289 1.31262 1.30991 1.26346 0.94871 1.02321 0.90728 0.86222 0.81291 0.79088 0.79279 1.19224 1.21135 1.16571 1.19706 0.92976 0.96437 1.35440 0.88338 1.17818 0.93042 0.90661 0.89068 1.20643 0.94802 1.05315 1.04275 1.20140 0.93488 0.95212 0.97712 1.16886 0.80130 1.06673 1.12390 1.43842 1.07033 1.48642 1.09184 1.22217 0.87926 1.03330 0.82749 1.84889 1.72041 1.34882 1.31312 1.74483 1.07164 1.20391 1.12992 1.74088 1.23361 1.17313 0.97036 1.24500 0.82868 1.04468 0.96514 1.19933 1.02474 0.92325 0.83026 1.58727 1.54629 1.15082 1.08912 1.20258 0.95927 0.95414 0.95894 1.20660 0.92115 1.04231 1.04938 0.89613 0.87259 0.88558 0.74451 0.87768 0.92778 0.83702 0.84363 0.88291 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.27 13.93 55.55 0.77 -17.50 16 2 C 0.08 1.83 5.40 -17.34 -0.09 1.74 16 3 Si 0.92 18.09 24.52 -169.99 -4.17 13.92 16 4 H -0.27 -5.12 6.70 56.52 0.38 -4.74 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.24 -4.89 6.87 56.52 0.39 -4.50 16 7 C -0.42 -9.82 9.56 -37.83 -0.36 -10.18 16 8 H 0.10 2.41 8.06 -52.49 -0.42 1.99 16 9 C 0.10 2.14 5.10 -106.81 -0.55 1.60 16 10 C -0.23 -4.82 7.12 -39.25 -0.28 -5.10 16 11 C -0.05 -0.88 9.86 -39.81 -0.39 -1.28 16 12 C -0.07 -1.33 5.43 -83.42 -0.45 -1.78 16 13 N -0.39 -7.27 2.81 -58.86 -0.17 -7.43 16 14 C 0.34 6.41 9.15 -88.42 -0.81 5.60 16 15 O -0.43 -7.03 13.60 -18.27 -0.25 -7.28 16 16 N -0.30 -5.96 12.22 29.72 0.36 -5.60 16 17 N -0.27 -5.37 12.18 33.02 0.40 -4.97 16 18 C 0.18 3.26 7.52 -153.85 -1.16 2.10 16 19 C 0.16 2.19 7.11 -4.97 -0.04 2.15 16 20 N -0.84 -10.81 9.61 -11.40 -0.11 -10.92 16 21 C -0.06 -1.03 9.62 -39.82 -0.38 -1.42 16 22 C -0.20 -3.98 9.74 -39.25 -0.38 -4.36 16 23 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 24 H 0.11 2.26 4.73 -52.48 -0.25 2.01 16 25 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.40 4.35 9.06 45.56 0.41 4.76 16 27 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.05 0.76 7.95 -51.93 -0.41 0.35 16 29 H 0.35 3.43 9.08 -39.29 -0.36 3.07 16 30 H 0.34 4.62 7.02 -39.29 -0.28 4.34 16 31 H 0.10 1.68 6.35 -52.48 -0.33 1.34 16 32 H 0.11 2.07 8.06 -52.48 -0.42 1.64 16 LS Contribution 279.95 15.07 4.22 4.22 Total: -1.00 -27.45 279.95 -5.90 -33.35 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -2.08 Total: 13.14 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -4.89 Total: -10.93 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 1.26 Total: -46.42 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.25 Total: -7.28 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -4.17 Total: 13.92 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.45 -5.90 -33.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711218227.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.873 kcal (2) G-P(sol) polarization free energy of solvation -27.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds