Wall clock time and date at job start Mon Mar 30 2020 04:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86792 * 120.00126 * 2 1 4 4 H 1.48495 * 109.47321 * 275.41111 * 3 2 1 5 5 H 1.48504 * 109.47315 * 35.41299 * 3 2 1 6 6 H 1.48506 * 109.47228 * 155.41127 * 3 2 1 7 7 C 1.39927 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00369 * 341.71965 * 7 2 1 9 9 C 1.41201 * 120.00110 * 161.71735 * 7 2 1 10 10 C 1.40840 * 120.17065 * 330.16736 * 9 7 2 11 11 C 1.36426 * 119.81879 * 179.69680 * 10 9 7 12 12 C 1.39369 * 120.17449 * 0.28193 * 11 10 9 13 13 N 1.39734 * 119.82211 * 179.97438 * 12 11 10 14 14 C 1.36689 * 127.16966 * 294.68365 * 13 12 11 15 15 O 1.35524 * 126.47215 * 359.97438 * 14 13 12 16 16 N 1.31024 * 107.05469 * 179.83539 * 14 13 12 17 17 N 1.28522 * 109.94470 * 0.44080 * 16 14 13 18 18 C 1.30326 * 110.09081 * 359.72048 * 17 16 14 19 19 C 1.50705 * 126.37093 * 179.97438 * 18 17 16 20 20 N 1.46901 * 109.46974 * 270.03675 * 19 18 17 21 21 C 1.39365 * 120.35527 * 0.02562 * 12 11 10 22 22 C 1.36426 * 120.17927 * 359.97438 * 21 12 11 23 23 H 0.97003 * 120.00198 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.09093 * 359.97438 * 10 9 7 25 25 H 1.07998 * 119.91308 * 180.25114 * 11 10 9 26 26 H 0.96700 * 114.00074 * 90.00340 * 15 14 13 27 27 H 1.09003 * 109.47453 * 30.03945 * 19 18 17 28 28 H 1.09001 * 109.46906 * 150.04130 * 19 18 17 29 29 H 1.00899 * 111.00035 * 180.02562 * 20 19 18 30 30 H 1.00901 * 110.99963 * 303.95580 * 20 19 18 31 31 H 1.08007 * 119.90874 * 179.97438 * 21 12 11 32 32 H 1.08004 * 120.08674 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.3757 2.1124 -1.3938 5 1 1.5019 2.6169 0.8113 6 1 3.5926 1.4098 0.5826 7 6 2.0081 -1.2118 0.0005 8 1 1.5090 -2.1234 0.2943 9 6 3.3666 -1.2430 -0.3831 10 6 3.8601 -0.3110 -1.3166 11 6 5.1754 -0.3437 -1.6774 12 6 6.0286 -1.2996 -1.1293 13 7 7.3743 -1.3267 -1.5045 14 6 7.8810 -1.6078 -2.7426 15 8 7.1688 -1.9173 -3.8532 16 7 9.1852 -1.5185 -2.6534 17 7 9.5225 -1.2126 -1.4515 18 6 8.4603 -1.0832 -0.7076 19 6 8.4328 -0.7315 0.7576 20 7 8.4879 -1.9622 1.5577 21 6 5.5466 -2.2294 -0.2098 22 6 4.2339 -2.2099 0.1613 23 1 -0.4850 0.8401 -0.0004 24 1 3.2001 0.4304 -1.7423 25 1 5.5563 0.3729 -2.3901 26 1 6.9200 -1.1505 -4.3873 27 1 9.2912 -0.1038 0.9968 28 1 7.5135 -0.1915 0.9844 29 1 8.4703 -1.7530 2.5446 30 1 7.7382 -2.5897 1.3080 31 1 6.2141 -2.9673 0.2102 32 1 3.8619 -2.9314 0.8737 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711218227.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:44 Heat of formation + Delta-G solvation = 41.978347 kcal Electronic energy + Delta-G solvation = -19061.166984 eV Core-core repulsion = 16022.396377 eV Total energy + Delta-G solvation = -3038.770608 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.16792 -40.01242 -38.67524 -36.63182 -35.70398 -34.89296 -31.97469 -31.64439 -30.85672 -27.32381 -26.31528 -23.96998 -23.79245 -22.70611 -21.77431 -19.98960 -19.60081 -18.70398 -17.61458 -17.30135 -17.26337 -16.03186 -15.86341 -15.67398 -15.21787 -15.04120 -14.84919 -14.58793 -14.33780 -13.91448 -13.57448 -13.24115 -13.13295 -12.87136 -12.70212 -12.33035 -12.07031 -11.86080 -11.61305 -11.31667 -11.01637 -10.23203 -9.88934 -9.76592 -9.60568 -9.06922 -6.67451 0.19526 0.66057 0.68921 1.18110 1.23147 1.36656 1.45143 1.59523 2.02195 2.35006 2.79020 3.24537 3.31818 3.65111 3.87272 4.02322 4.02685 4.38588 4.51875 4.53891 4.67481 4.71879 4.82324 4.87804 4.99311 5.20632 5.36801 5.60831 5.69844 5.78567 5.96325 6.02129 6.16305 6.42557 6.46875 6.56464 6.63680 7.53651 7.98855 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.026445 B = 0.006389 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.549306 B = 4381.426443 C = 4710.468739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.051 3.949 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.247 1.247 7 C -0.457 4.457 8 H 0.070 0.930 9 C 0.088 3.912 10 C -0.238 4.238 11 C -0.046 4.046 12 C -0.052 4.052 13 N -0.401 5.401 14 C 0.344 3.656 15 O -0.438 6.438 16 N -0.320 5.320 17 N -0.296 5.296 18 C 0.191 3.809 19 C 0.156 3.844 20 N -0.843 5.843 21 C -0.051 4.051 22 C -0.202 4.202 23 H 0.300 0.700 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.423 0.577 27 H 0.123 0.877 28 H 0.058 0.942 29 H 0.367 0.633 30 H 0.339 0.661 31 H 0.120 0.880 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 3.357 1.218 8.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.168 4.168 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.170 1.170 7 C -0.484 4.484 8 H 0.088 0.912 9 C 0.085 3.915 10 C -0.257 4.257 11 C -0.066 4.066 12 C -0.143 4.143 13 N -0.097 5.097 14 C 0.040 3.960 15 O -0.239 6.239 16 N -0.171 5.171 17 N -0.139 5.139 18 C -0.077 4.077 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.071 4.071 22 C -0.222 4.222 23 H 0.111 0.889 24 H 0.128 0.872 25 H 0.139 0.861 26 H 0.283 0.717 27 H 0.141 0.859 28 H 0.076 0.924 29 H 0.184 0.816 30 H 0.153 0.847 31 H 0.138 0.862 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.318 2.703 0.535 9.717 hybrid contribution -2.769 1.068 0.185 2.974 sum 6.548 3.772 0.720 7.591 Atomic orbital electron populations 1.69708 1.09337 1.32315 1.33333 1.26929 0.95322 1.04437 0.90095 0.85525 0.79944 0.76272 0.79806 1.18093 1.20211 1.17032 1.19644 0.94154 0.96061 1.38549 0.91232 1.17968 0.92694 0.91564 0.89285 1.20722 0.95602 1.05248 1.04147 1.20360 0.92813 0.95561 0.97839 1.17040 0.80445 1.05738 1.11058 1.43915 1.06814 1.49538 1.09438 1.22341 0.87905 1.02478 0.83313 1.84850 1.71601 1.36611 1.30880 1.74442 1.07851 1.21381 1.13474 1.74053 1.24185 1.18394 0.97250 1.25181 0.82050 1.02807 0.97616 1.20102 1.03557 0.92971 0.81080 1.58697 1.54428 1.14489 1.10143 1.20443 0.95605 0.95536 0.95475 1.20828 0.92473 1.03943 1.04979 0.88864 0.87185 0.86110 0.71690 0.85872 0.92418 0.81646 0.84750 0.86178 0.86093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.67 13.93 21.82 0.30 -39.37 16 2 C 0.05 2.36 5.40 85.25 0.46 2.82 16 3 Si 0.96 36.51 24.52 68.60 1.68 38.19 16 4 H -0.26 -9.17 6.70 99.48 0.67 -8.50 16 5 H -0.28 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.25 -9.43 6.87 99.48 0.68 -8.74 16 7 C -0.46 -22.00 9.56 23.41 0.22 -21.78 16 8 H 0.07 3.62 8.06 -2.91 -0.02 3.59 16 9 C 0.09 3.82 5.10 -21.28 -0.11 3.71 16 10 C -0.24 -9.50 7.12 22.48 0.16 -9.34 16 11 C -0.05 -1.65 9.86 22.12 0.22 -1.43 16 12 C -0.05 -1.81 5.43 38.43 0.21 -1.60 16 13 N -0.40 -13.64 2.81 -450.74 -1.27 -14.90 16 14 C 0.34 12.00 9.15 179.58 1.64 13.64 16 15 O -0.44 -12.98 13.60 -88.27 -1.20 -14.18 16 16 N -0.32 -12.12 12.22 -173.46 -2.12 -14.24 16 17 N -0.30 -10.92 12.18 -49.43 -0.60 -11.53 16 18 C 0.19 6.22 7.52 137.58 1.03 7.26 16 19 C 0.16 3.88 7.11 85.56 0.61 4.48 16 20 N -0.84 -19.02 9.61 -189.99 -1.83 -20.85 16 21 C -0.05 -1.77 9.62 22.12 0.21 -1.56 16 22 C -0.20 -7.81 9.74 22.48 0.22 -7.59 16 23 H 0.30 12.89 8.30 -92.71 -0.77 12.12 16 24 H 0.11 4.37 4.73 -2.91 -0.01 4.36 16 25 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 26 H 0.42 7.88 9.06 -74.06 -0.67 7.21 16 27 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.06 1.42 7.95 -2.39 -0.02 1.40 16 29 H 0.37 6.02 9.08 -89.69 -0.81 5.20 16 30 H 0.34 8.09 7.02 -89.69 -0.63 7.46 16 31 H 0.12 3.68 6.35 -2.91 -0.02 3.66 16 32 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -58.02 279.95 -1.12 -59.14 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -0.97 Total: 29.12 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.88 Total: -11.39 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -5.51 Total: -100.89 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.20 Total: -14.18 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 1.68 Total: 38.19 kcal Total: -58.02 -1.12 -59.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711218227.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.122 kcal (2) G-P(sol) polarization free energy of solvation -58.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds