Wall clock time and date at job start Mon Mar 30 2020 04:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47119 * 45.64378 * 3 2 1 5 5 N 1.41604 * 113.99352 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99507 * 179.97438 * 5 4 3 7 7 O 1.21579 * 119.99868 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99626 * 180.02562 * 6 5 4 9 9 C 1.39248 * 119.99562 * 184.29134 * 8 6 5 10 10 C 1.39483 * 119.83379 * 324.70612 * 9 8 6 11 11 C 1.36373 * 120.16740 * 180.25255 * 10 9 8 12 12 C 1.40873 * 119.82565 * 359.50568 * 11 10 9 13 13 C 1.41153 * 120.16150 * 180.22980 * 12 11 10 14 14 H 1.08004 * 120.00075 * 215.03885 * 13 12 11 15 15 C 1.39892 * 120.00337 * 35.03205 * 13 12 11 16 16 N 1.30884 * 119.99884 * 355.55037 * 15 13 12 17 17 Si 1.86798 * 119.99911 * 175.54381 * 15 13 12 18 18 H 1.48499 * 109.47217 * 60.00814 * 17 15 13 19 19 H 1.48510 * 109.46919 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47414 * 300.00141 * 17 15 13 21 21 C 1.40866 * 119.67434 * 0.51502 * 12 11 10 22 22 C 1.36376 * 119.82921 * 359.73501 * 21 12 11 23 23 H 4.38445 * 5.44399 * 180.02562 * 4 1 2 24 24 H 1.09004 * 109.47305 * 285.64116 * 3 2 1 25 25 H 1.08997 * 109.46752 * 165.64660 * 3 2 1 26 26 H 0.96994 * 120.00534 * 0.02562 * 5 4 3 27 27 H 0.96995 * 120.00024 * 4.29357 * 8 6 5 28 28 H 1.08001 * 119.91655 * 359.97438 * 10 9 8 29 29 H 1.07997 * 120.08520 * 179.74603 * 11 10 9 30 30 H 0.97000 * 119.99535 * 179.97438 * 16 15 13 31 31 H 1.08003 * 120.08607 * 179.71299 * 21 12 11 32 32 H 1.07999 * 119.91836 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.9410 -0.9633 5 7 4.5344 -1.0180 -1.0435 6 6 5.1145 -1.8688 -1.9132 7 8 4.4256 -2.5697 -2.6291 8 7 6.4581 -1.9425 -1.9893 9 6 7.0576 -2.7546 -2.9485 10 6 6.4611 -3.9641 -3.3046 11 6 7.0450 -4.7671 -4.2394 12 6 8.2482 -4.3673 -4.8534 13 6 8.8561 -5.1907 -5.8255 14 1 9.9329 -5.2434 -5.8916 15 6 8.0641 -5.9386 -6.7032 16 7 6.7623 -5.9431 -6.5676 17 14 8.8644 -6.9306 -8.0687 18 1 9.7878 -7.9319 -7.4773 19 1 7.8147 -7.6280 -8.8544 20 1 9.6267 -6.0202 -8.9606 21 6 8.8448 -3.1446 -4.4882 22 6 8.2518 -2.3546 -3.5480 23 1 -1.0499 0.0000 -0.0003 24 1 3.0095 -0.2763 0.9896 25 1 3.0088 0.9964 -0.2548 26 1 5.0839 -0.4592 -0.4722 27 1 7.0074 -1.4299 -1.3758 28 1 5.5369 -4.2676 -2.8355 29 1 6.5842 -5.7053 -4.5112 30 1 6.2131 -6.4613 -7.1764 31 1 9.7697 -2.8338 -4.9513 32 1 8.7082 -1.4171 -3.2666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711229059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:02 Heat of formation + Delta-G solvation = 69.657700 kcal Electronic energy + Delta-G solvation = -17853.530485 eV Core-core repulsion = 14783.667393 eV Total energy + Delta-G solvation = -3069.863092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.81457 -37.98635 -36.96765 -34.38119 -33.80815 -32.97528 -31.51727 -29.44353 -28.72078 -27.10865 -24.78786 -21.81115 -21.13697 -20.24113 -18.96845 -18.20784 -17.79159 -17.23265 -16.05879 -15.98392 -15.19501 -14.96054 -14.60624 -14.05836 -13.84049 -13.16770 -13.00703 -12.65445 -12.09373 -12.03497 -11.66856 -11.41265 -11.11232 -10.97019 -10.92720 -10.49655 -10.43678 -9.98269 -9.86944 -9.59698 -9.06237 -8.83887 -8.75169 -7.47694 -6.84900 -6.54340 -4.28771 1.41633 2.44497 2.57805 2.76281 3.09487 3.13799 3.15347 3.20654 3.68265 3.94363 4.02876 4.37988 4.55127 4.77095 4.92779 4.93350 5.53063 5.69502 6.15332 6.37243 6.62502 6.79841 6.87365 7.08552 7.17550 7.19383 7.29860 7.37907 7.69224 7.83907 8.03244 8.13718 8.33258 8.43351 8.72210 8.96149 8.98134 9.10457 10.36632 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.039953 B = 0.003637 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.650448 B = 7697.704757 C = 8290.366555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.196 4.196 3 C 0.146 3.854 4 O -0.121 6.121 5 N -0.619 5.619 6 C 0.710 3.290 7 O -0.551 6.551 8 N -0.657 5.657 9 C 0.023 3.977 10 C -0.093 4.093 11 C -0.143 4.143 12 C 0.100 3.900 13 C -0.464 4.464 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.807 5.807 17 Si 0.915 3.085 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.204 4.204 22 C -0.112 4.112 23 H 0.226 0.774 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.400 0.600 27 H 0.393 0.607 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.279 0.721 31 H 0.097 0.903 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 10.357 11.979 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.197 4.197 3 C 0.070 3.930 4 O -0.125 6.125 5 N -0.325 5.325 6 C 0.411 3.589 7 O -0.424 6.424 8 N -0.307 5.307 9 C -0.069 4.069 10 C -0.113 4.113 11 C -0.163 4.163 12 C 0.098 3.902 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.147 4.147 16 N -0.434 5.434 17 Si 0.740 3.260 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.224 4.224 22 C -0.133 4.133 23 H 0.243 0.757 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.240 0.760 27 H 0.226 0.774 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.354 9.488 11.070 15.532 hybrid contribution 0.449 0.494 0.115 0.677 sum -4.906 9.982 11.185 15.774 Atomic orbital electron populations 1.25012 0.95844 0.98207 0.98114 1.21960 0.93198 1.02262 1.02304 1.19403 0.85556 0.94257 0.93822 1.90691 1.01065 1.61241 1.59534 1.46193 0.94093 1.46809 1.45449 1.15502 0.82604 0.80555 0.80241 1.90975 1.61811 1.44963 1.44684 1.41840 1.02722 1.49168 1.36949 1.17042 0.97350 0.93183 0.99361 1.20701 0.99018 0.92504 0.99099 1.21305 0.98212 1.00671 0.96096 1.17726 0.91903 0.90450 0.90169 1.19436 0.94350 1.22166 1.13514 0.90686 1.25893 0.94740 0.95243 0.98787 1.69789 1.04930 1.33996 1.34662 0.86261 0.79391 0.79813 0.80495 1.19099 1.20460 1.19175 1.20674 1.02518 0.96336 1.02895 1.20034 0.96252 0.98607 0.98397 0.75744 0.89727 0.89710 0.76044 0.77411 0.87226 0.85170 0.91012 0.88463 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 19.25 29.55 0.57 -0.84 16 2 C -0.20 -2.13 13.73 -37.12 -0.51 -2.64 16 3 C 0.15 1.42 6.70 34.37 0.23 1.65 16 4 O -0.12 -1.84 11.07 -29.62 -0.33 -2.16 16 5 N -0.62 -8.58 6.39 27.63 0.18 -8.40 16 6 C 0.71 13.50 8.54 -86.91 -0.74 12.75 16 7 O -0.55 -13.65 14.17 -12.85 -0.18 -13.83 16 8 N -0.66 -11.45 5.31 -14.09 -0.07 -11.52 16 9 C 0.02 0.50 6.31 -83.56 -0.53 -0.02 16 10 C -0.09 -2.36 8.61 -39.79 -0.34 -2.71 16 11 C -0.14 -3.88 8.61 -39.26 -0.34 -4.22 16 12 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 13 C -0.46 -12.45 9.02 -37.86 -0.34 -12.79 16 14 H 0.07 1.91 7.85 -52.48 -0.41 1.49 16 15 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 16 N -0.81 -21.88 10.61 55.55 0.59 -21.29 16 17 Si 0.92 19.33 29.56 -169.99 -5.03 14.30 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 C -0.20 -4.91 9.74 -39.26 -0.38 -5.30 16 22 C -0.11 -2.42 9.90 -39.79 -0.39 -2.82 16 23 H 0.23 1.14 7.80 -54.10 -0.42 0.72 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.40 3.45 8.56 -40.82 -0.35 3.10 16 27 H 0.39 4.90 8.83 -40.82 -0.36 4.54 16 28 H 0.11 2.85 6.22 -52.49 -0.33 2.53 16 29 H 0.13 3.71 6.15 -52.49 -0.32 3.39 16 30 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 31 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 32 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -34.65 295.92 -6.87 -41.52 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -3.02 Total: 10.07 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.46 Total: -13.14 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.69 Total: -41.21 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.51 Total: -16.00 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.65 -6.87 -41.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711229059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.173 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds