Wall clock time and date at job start Mon Mar 30 2020 04:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47119 * 45.64378 * 3 2 1 5 5 N 1.41604 * 113.99352 * 179.97438 * 4 3 2 6 6 C 1.34782 * 119.99507 * 179.97438 * 5 4 3 7 7 O 1.21579 * 119.99868 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99626 * 180.02562 * 6 5 4 9 9 C 1.39248 * 119.99562 * 184.29134 * 8 6 5 10 10 C 1.39483 * 119.83379 * 324.70612 * 9 8 6 11 11 C 1.36373 * 120.16740 * 180.25255 * 10 9 8 12 12 C 1.40873 * 119.82565 * 359.50568 * 11 10 9 13 13 C 1.41153 * 120.16150 * 180.22980 * 12 11 10 14 14 H 1.08004 * 120.00075 * 215.03885 * 13 12 11 15 15 C 1.39892 * 120.00337 * 35.03205 * 13 12 11 16 16 N 1.30884 * 119.99884 * 355.55037 * 15 13 12 17 17 Si 1.86798 * 119.99911 * 175.54381 * 15 13 12 18 18 H 1.48499 * 109.47217 * 60.00814 * 17 15 13 19 19 H 1.48510 * 109.46919 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47414 * 300.00141 * 17 15 13 21 21 C 1.40866 * 119.67434 * 0.51502 * 12 11 10 22 22 C 1.36376 * 119.82921 * 359.73501 * 21 12 11 23 23 H 4.38445 * 5.44399 * 180.02562 * 4 1 2 24 24 H 1.09004 * 109.47305 * 285.64116 * 3 2 1 25 25 H 1.08997 * 109.46752 * 165.64660 * 3 2 1 26 26 H 0.96994 * 120.00534 * 0.02562 * 5 4 3 27 27 H 0.96995 * 120.00024 * 4.29357 * 8 6 5 28 28 H 1.08001 * 119.91655 * 359.97438 * 10 9 8 29 29 H 1.07997 * 120.08520 * 179.74603 * 11 10 9 30 30 H 0.97000 * 119.99535 * 179.97438 * 16 15 13 31 31 H 1.08003 * 120.08607 * 179.71299 * 21 12 11 32 32 H 1.07999 * 119.91836 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1227 -0.9410 -0.9633 5 7 4.5344 -1.0180 -1.0435 6 6 5.1145 -1.8688 -1.9132 7 8 4.4256 -2.5697 -2.6291 8 7 6.4581 -1.9425 -1.9893 9 6 7.0576 -2.7546 -2.9485 10 6 6.4611 -3.9641 -3.3046 11 6 7.0450 -4.7671 -4.2394 12 6 8.2482 -4.3673 -4.8534 13 6 8.8561 -5.1907 -5.8255 14 1 9.9329 -5.2434 -5.8916 15 6 8.0641 -5.9386 -6.7032 16 7 6.7623 -5.9431 -6.5676 17 14 8.8644 -6.9306 -8.0687 18 1 9.7878 -7.9319 -7.4773 19 1 7.8147 -7.6280 -8.8544 20 1 9.6267 -6.0202 -8.9606 21 6 8.8448 -3.1446 -4.4882 22 6 8.2518 -2.3546 -3.5480 23 1 -1.0499 0.0000 -0.0003 24 1 3.0095 -0.2763 0.9896 25 1 3.0088 0.9964 -0.2548 26 1 5.0839 -0.4592 -0.4722 27 1 7.0074 -1.4299 -1.3758 28 1 5.5369 -4.2676 -2.8355 29 1 6.5842 -5.7053 -4.5112 30 1 6.2131 -6.4613 -7.1764 31 1 9.7697 -2.8338 -4.9513 32 1 8.7082 -1.4171 -3.2666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711229059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:01 Heat of formation + Delta-G solvation = 46.118747 kcal Electronic energy + Delta-G solvation = -17854.551211 eV Core-core repulsion = 14783.667393 eV Total energy + Delta-G solvation = -3070.883818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.36336 -39.40920 -38.46759 -36.14336 -34.94990 -34.50133 -32.81001 -31.35525 -30.49618 -27.99622 -26.61622 -23.48910 -22.96873 -21.86289 -20.10145 -19.38745 -19.15126 -18.93056 -17.59712 -17.14210 -16.92394 -16.11705 -16.00134 -15.69213 -15.29163 -14.84775 -14.49653 -14.01950 -13.89685 -13.66009 -13.28054 -13.01590 -12.79095 -12.64676 -12.28987 -11.82127 -11.73185 -11.69445 -11.36608 -11.24105 -10.93007 -10.56830 -10.05071 -9.40528 -8.70193 -8.45724 -6.29046 0.28984 0.92065 1.18437 1.40937 1.51434 1.54329 1.71984 1.74195 2.12250 2.26630 2.84427 2.93987 3.42132 3.72943 3.75478 4.19335 4.29776 4.49260 4.53289 4.91814 4.98280 5.12852 5.17983 5.35550 5.43223 5.52037 5.76080 5.81792 6.11739 6.13869 6.18322 6.40812 6.48380 6.75351 6.99700 7.05696 7.08757 7.61276 8.46983 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.039953 B = 0.003637 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.650448 B = 7697.704757 C = 8290.366555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.247 4.247 3 C 0.140 3.860 4 O -0.158 6.158 5 N -0.591 5.591 6 C 0.708 3.292 7 O -0.616 6.616 8 N -0.640 5.640 9 C 0.039 3.961 10 C -0.110 4.110 11 C -0.168 4.168 12 C 0.065 3.935 13 C -0.496 4.496 14 H 0.082 0.918 15 C 0.021 3.979 16 N -0.848 5.848 17 Si 0.991 3.009 18 H -0.257 1.257 19 H -0.276 1.276 20 H -0.259 1.259 21 C -0.208 4.208 22 C -0.101 4.101 23 H 0.258 0.742 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.429 0.571 27 H 0.422 0.578 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.281 0.719 31 H 0.116 0.884 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.447 12.584 13.052 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.248 4.248 3 C 0.065 3.935 4 O -0.164 6.164 5 N -0.298 5.298 6 C 0.409 3.591 7 O -0.494 6.494 8 N -0.292 5.292 9 C -0.055 4.055 10 C -0.130 4.130 11 C -0.189 4.189 12 C 0.063 3.937 13 C -0.527 4.527 14 H 0.100 0.900 15 C -0.191 4.191 16 N -0.477 5.477 17 Si 0.812 3.188 18 H -0.181 1.181 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.228 4.228 22 C -0.122 4.122 23 H 0.274 0.726 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.274 0.726 27 H 0.260 0.740 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.440 11.804 12.246 17.579 hybrid contribution 0.029 -0.023 -0.011 0.039 sum -4.410 11.782 12.235 17.548 Atomic orbital electron populations 1.25964 0.96859 0.96456 0.96352 1.22572 0.94307 1.03940 1.03988 1.19759 0.85264 0.94471 0.93971 1.90675 1.00835 1.63224 1.61620 1.45581 0.94593 1.45485 1.44148 1.15631 0.82631 0.80507 0.80317 1.90952 1.63324 1.47626 1.47455 1.41474 1.02689 1.48543 1.36522 1.17057 0.97118 0.92173 0.99105 1.20694 0.98801 0.94185 0.99350 1.21150 0.99364 1.00534 0.97817 1.18072 0.92364 0.92245 0.91016 1.19751 0.94846 1.23635 1.14479 0.90027 1.26868 0.95071 0.96014 1.01103 1.69929 1.06534 1.35279 1.35911 0.85120 0.78393 0.78227 0.77076 1.18105 1.20041 1.18295 1.20972 1.03053 0.95489 1.03280 1.20417 0.95288 0.99793 0.96663 0.72566 0.87095 0.87143 0.72650 0.73953 0.88835 0.87979 0.90855 0.86569 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 19.25 74.32 1.43 -0.86 16 2 C -0.25 -5.02 13.73 31.13 0.43 -4.59 16 3 C 0.14 2.44 6.70 70.18 0.47 2.91 16 4 O -0.16 -4.59 11.07 -21.44 -0.24 -4.83 16 5 N -0.59 -15.07 6.39 -184.74 -1.18 -16.26 16 6 C 0.71 26.13 8.54 179.05 1.53 27.66 16 7 O -0.62 -31.12 14.17 13.39 0.19 -30.93 16 8 N -0.64 -20.74 5.31 -316.77 -1.68 -22.42 16 9 C 0.04 1.69 6.31 38.56 0.24 1.93 16 10 C -0.11 -5.78 8.61 22.13 0.19 -5.59 16 11 C -0.17 -9.65 8.61 22.48 0.19 -9.45 16 12 C 0.07 3.62 5.55 -21.28 -0.12 3.50 16 13 C -0.50 -27.34 9.02 23.39 0.21 -27.13 16 14 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 15 C 0.02 1.10 5.42 85.23 0.46 1.56 16 16 N -0.85 -48.31 10.61 21.82 0.23 -48.08 16 17 Si 0.99 40.29 29.56 68.60 2.03 42.31 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 C -0.21 -9.78 9.74 22.48 0.22 -9.56 16 22 C -0.10 -4.09 9.90 22.13 0.22 -3.87 16 23 H 0.26 1.90 7.80 -4.42 -0.03 1.87 16 24 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.43 5.81 8.56 -92.71 -0.79 5.02 16 27 H 0.42 8.74 8.83 -92.71 -0.82 7.92 16 28 H 0.09 5.16 6.22 -2.91 -0.02 5.14 16 29 H 0.10 6.31 6.15 -2.91 -0.02 6.29 16 30 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16 31 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 32 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -80.73 295.92 4.39 -76.34 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.44 Total: 27.34 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 5.48 Total: -23.49 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -2.63 Total: -86.75 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.05 Total: -35.76 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Total: -80.73 4.39 -76.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711229059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.464 kcal (2) G-P(sol) polarization free energy of solvation -80.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds