Wall clock time and date at job start Mon Mar 30 2020 04:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99906 * 2 1 4 4 H 1.48505 * 109.47187 * 269.99530 * 3 2 1 5 5 H 1.48493 * 109.47329 * 29.99621 * 3 2 1 6 6 H 1.48510 * 109.47196 * 149.99858 * 3 2 1 7 7 C 1.37879 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00241 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99913 * 180.02562 * 7 2 1 10 10 O 1.42103 * 106.39935 * 66.46394 * 9 7 2 11 11 O 1.42093 * 106.40250 * 293.54425 * 9 7 2 12 12 N 1.65602 * 107.21631 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99664 * 65.00612 * 12 9 7 14 14 C 1.52996 * 109.47156 * 164.99591 * 13 12 9 15 15 C 1.56243 * 116.68892 * 61.01132 * 14 13 12 16 16 C 1.54658 * 103.36289 * 159.81506 * 15 14 13 17 17 N 1.49915 * 105.09419 * 0.78333 * 16 15 14 18 18 C 1.49516 * 106.01300 * 71.16372 * 17 16 15 19 19 C 1.54660 * 105.28087 * 288.72484 * 18 17 16 20 20 C 1.50460 * 102.01968 * 324.72835 * 17 16 15 21 21 H 0.96996 * 119.99886 * 0.02562 * 1 2 3 22 22 H 0.96990 * 120.00388 * 244.99531 * 12 9 7 23 23 H 1.09007 * 109.47138 * 44.99240 * 13 12 9 24 24 H 1.09004 * 109.47014 * 284.99854 * 13 12 9 25 25 H 1.09002 * 110.67045 * 278.33055 * 15 14 13 26 26 H 1.09001 * 110.67212 * 41.30044 * 15 14 13 27 27 H 1.09002 * 110.28182 * 119.70157 * 16 15 14 28 28 H 1.09000 * 110.27820 * 241.78703 * 16 15 14 29 29 H 1.08994 * 110.28371 * 169.77601 * 18 17 16 30 30 H 1.08997 * 110.36457 * 47.71245 * 18 17 16 31 31 H 1.09005 * 110.67035 * 240.91173 * 19 18 17 32 32 H 1.09000 * 110.81372 * 117.84485 * 19 18 17 33 33 H 1.09002 * 111.90767 * 297.89847 * 20 17 16 34 34 H 1.09000 * 111.91197 * 171.69129 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 16 3.7666 -1.1940 0.0012 10 8 4.1673 -0.6494 1.2511 11 8 4.1683 -0.6498 -1.2484 12 7 4.2568 -2.7758 0.0025 13 6 3.9619 -3.6349 -1.1471 14 6 4.8207 -4.8989 -1.0726 15 6 4.6168 -5.8133 0.1778 16 6 5.1824 -7.1777 -0.2810 17 7 5.6629 -6.9497 -1.6826 18 6 6.8850 -6.0962 -1.5660 19 6 6.3689 -4.7007 -1.1438 20 6 4.6465 -5.9722 -2.2073 21 1 -0.4850 0.8400 -0.0004 22 1 4.7392 -3.1335 0.7641 23 1 4.1852 -3.0977 -2.0689 24 1 2.9074 -3.9107 -1.1336 25 1 5.1786 -5.4308 1.0299 26 1 3.5583 -5.8986 0.4236 27 1 6.0115 -7.4777 0.3598 28 1 4.3991 -7.9355 -0.2663 29 1 7.3964 -6.0352 -2.5265 30 1 7.5561 -6.4966 -0.8061 31 1 6.6269 -3.9522 -1.8930 32 1 6.7660 -4.4197 -0.1684 33 1 3.6420 -6.3954 -2.2161 34 1 4.9264 -5.5796 -3.1848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715546945.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:58 Heat of formation + Delta-G solvation = -60.449001 kcal Electronic energy + Delta-G solvation = -18336.576333 eV Core-core repulsion = 15396.515342 eV Total energy + Delta-G solvation = -2940.060991 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81797 -35.66555 -34.76110 -34.43212 -33.03522 -30.69238 -30.09103 -28.31623 -26.42288 -24.66664 -22.48026 -21.06613 -19.11083 -18.71791 -17.48658 -16.71381 -16.08312 -15.89485 -15.39440 -14.93287 -14.61608 -13.83961 -13.52948 -13.28052 -13.13961 -12.84485 -12.77278 -12.16977 -11.84927 -11.70975 -11.55870 -11.39358 -11.16204 -10.96204 -10.69363 -10.63716 -10.55252 -10.50059 -10.19625 -9.85729 -9.23620 -9.22000 -9.06645 -8.57075 -6.81272 -5.35071 2.07038 3.06740 3.17182 3.26345 3.82391 3.94668 4.27785 4.40402 4.47576 4.59208 4.94659 4.99351 5.02502 5.11541 5.12042 5.33956 5.49851 5.55306 5.67300 5.72598 5.77245 5.80516 5.85257 5.94259 5.97649 6.08154 6.17286 6.28100 6.45663 6.56091 6.58941 7.46739 7.71718 8.19570 8.69931 10.31083 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.042529 B = 0.005906 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.210938 B = 4740.146823 C = 4943.122081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.153 3.847 3 Si 0.802 3.198 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.015 5.015 8 H 0.121 0.879 9 S 2.677 3.323 10 O -1.010 7.010 11 O -1.012 7.012 12 N -1.122 6.122 13 C 0.163 3.837 14 C -0.106 4.106 15 C -0.145 4.145 16 C 0.013 3.987 17 N -0.470 5.470 18 C 0.012 3.988 19 C -0.144 4.144 20 C 0.019 3.981 21 H 0.280 0.720 22 H 0.404 0.596 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.084 -11.652 -1.879 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.622 3.378 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.150 5.150 8 H 0.139 0.861 9 S 2.778 3.222 10 O -1.000 7.000 11 O -1.002 7.002 12 N -0.878 5.878 13 C 0.036 3.964 14 C -0.109 4.109 15 C -0.184 4.184 16 C -0.116 4.116 17 N -0.190 5.190 18 C -0.117 4.117 19 C -0.183 4.183 20 C -0.110 4.110 21 H 0.091 0.909 22 H 0.235 0.765 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.534 -11.430 -2.442 15.084 hybrid contribution -0.398 1.051 0.957 1.476 sum 9.136 -10.379 -1.486 13.907 Atomic orbital electron populations 1.69987 1.06598 1.29040 1.39655 1.24433 0.94788 0.98838 0.88618 0.87852 0.83559 0.84528 0.81815 1.17006 1.17944 1.14252 1.30460 1.15688 1.02123 1.66701 0.86113 1.01286 0.77270 0.70375 0.73221 1.93474 1.85537 1.75906 1.45083 1.93401 1.85030 1.76111 1.45624 1.55417 1.74334 1.31368 1.26675 1.20496 0.97892 0.88681 0.89352 1.23899 0.95447 0.95365 0.96196 1.23255 1.02346 0.95166 0.97639 1.23650 1.00279 0.97183 0.90523 1.70040 1.03132 1.31259 1.14545 1.23583 0.94289 0.91923 1.01892 1.23252 0.94625 0.97953 1.02456 1.24513 0.97387 0.91181 0.97937 0.90913 0.76465 0.90066 0.91240 0.91090 0.90624 0.90853 0.90031 0.90082 0.90871 0.90727 0.91094 0.89236 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.67 13.96 55.43 0.77 -22.90 16 2 C 0.15 4.36 5.47 -17.82 -0.10 4.26 16 3 Si 0.80 20.54 26.54 -169.99 -4.51 16.03 16 4 H -0.25 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.22 -5.75 5.61 56.52 0.32 -5.43 16 7 C -1.02 -27.88 10.26 30.60 0.31 -27.56 16 8 H 0.12 3.33 8.06 -52.49 -0.42 2.90 16 9 S 2.68 65.30 4.24 -107.50 -0.46 64.84 16 10 O -1.01 -26.78 16.02 -57.17 -0.92 -27.69 16 11 O -1.01 -26.45 16.30 -57.17 -0.93 -27.38 16 12 N -1.12 -20.52 5.87 -10.61 -0.06 -20.58 16 13 C 0.16 2.58 6.16 -4.04 -0.02 2.55 16 14 C -0.11 -1.32 1.15 -148.78 -0.17 -1.49 16 15 C -0.15 -1.64 5.60 -24.12 -0.14 -1.77 16 16 C 0.01 0.13 6.64 -1.26 -0.01 0.12 16 17 N -0.47 -5.25 6.94 -221.72 -1.54 -6.79 16 18 C 0.01 0.12 6.61 -1.49 -0.01 0.11 16 19 C -0.14 -1.68 5.95 -24.12 -0.14 -1.82 16 20 C 0.02 0.22 6.52 0.43 0.00 0.22 16 21 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.40 6.44 8.20 -34.47 -0.28 6.15 16 23 H 0.08 1.33 7.75 -51.92 -0.40 0.92 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.78 7.70 -51.93 -0.40 0.38 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.68 7.71 -51.93 -0.40 0.28 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.68 7.71 -51.93 -0.40 0.28 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 284.31 15.07 4.28 4.28 Total: -1.00 -32.16 284.31 -8.53 -40.69 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.89 Total: 4.88 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -0.27 Total: -25.38 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.83 Total: -50.26 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -1.85 Total: -55.08 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.51 Total: 16.03 kcal Atomic # 16 Polarization: 65.30 SS G_CDS: -0.46 Total: 64.84 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.16 -8.53 -40.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715546945.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.761 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds