Wall clock time and date at job start Mon Mar 30 2020 04:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99906 * 2 1 4 4 H 1.48505 * 109.47187 * 269.99530 * 3 2 1 5 5 H 1.48493 * 109.47329 * 29.99621 * 3 2 1 6 6 H 1.48510 * 109.47196 * 149.99858 * 3 2 1 7 7 C 1.37879 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00241 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99913 * 180.02562 * 7 2 1 10 10 O 1.42103 * 106.39935 * 66.46394 * 9 7 2 11 11 O 1.42093 * 106.40250 * 293.54425 * 9 7 2 12 12 N 1.65602 * 107.21631 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99664 * 65.00612 * 12 9 7 14 14 C 1.52996 * 109.47156 * 164.99591 * 13 12 9 15 15 C 1.56243 * 116.68892 * 61.01132 * 14 13 12 16 16 C 1.54658 * 103.36289 * 159.81506 * 15 14 13 17 17 N 1.49915 * 105.09419 * 0.78333 * 16 15 14 18 18 C 1.49516 * 106.01300 * 71.16372 * 17 16 15 19 19 C 1.54660 * 105.28087 * 288.72484 * 18 17 16 20 20 C 1.50460 * 102.01968 * 324.72835 * 17 16 15 21 21 H 0.96996 * 119.99886 * 0.02562 * 1 2 3 22 22 H 0.96990 * 120.00388 * 244.99531 * 12 9 7 23 23 H 1.09007 * 109.47138 * 44.99240 * 13 12 9 24 24 H 1.09004 * 109.47014 * 284.99854 * 13 12 9 25 25 H 1.09002 * 110.67045 * 278.33055 * 15 14 13 26 26 H 1.09001 * 110.67212 * 41.30044 * 15 14 13 27 27 H 1.09002 * 110.28182 * 119.70157 * 16 15 14 28 28 H 1.09000 * 110.27820 * 241.78703 * 16 15 14 29 29 H 1.08994 * 110.28371 * 169.77601 * 18 17 16 30 30 H 1.08997 * 110.36457 * 47.71245 * 18 17 16 31 31 H 1.09005 * 110.67035 * 240.91173 * 19 18 17 32 32 H 1.09000 * 110.81372 * 117.84485 * 19 18 17 33 33 H 1.09002 * 111.90767 * 297.89847 * 20 17 16 34 34 H 1.09000 * 111.91197 * 171.69129 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 16 3.7666 -1.1940 0.0012 10 8 4.1673 -0.6494 1.2511 11 8 4.1683 -0.6498 -1.2484 12 7 4.2568 -2.7758 0.0025 13 6 3.9619 -3.6349 -1.1471 14 6 4.8207 -4.8989 -1.0726 15 6 4.6168 -5.8133 0.1778 16 6 5.1824 -7.1777 -0.2810 17 7 5.6629 -6.9497 -1.6826 18 6 6.8850 -6.0962 -1.5660 19 6 6.3689 -4.7007 -1.1438 20 6 4.6465 -5.9722 -2.2073 21 1 -0.4850 0.8400 -0.0004 22 1 4.7392 -3.1335 0.7641 23 1 4.1852 -3.0977 -2.0689 24 1 2.9074 -3.9107 -1.1336 25 1 5.1786 -5.4308 1.0299 26 1 3.5583 -5.8986 0.4236 27 1 6.0115 -7.4777 0.3598 28 1 4.3991 -7.9355 -0.2663 29 1 7.3964 -6.0352 -2.5265 30 1 7.5561 -6.4966 -0.8061 31 1 6.6269 -3.9522 -1.8930 32 1 6.7660 -4.4197 -0.1684 33 1 3.6420 -6.3954 -2.2161 34 1 4.9264 -5.5796 -3.1848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715546945.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:57 Heat of formation + Delta-G solvation = -88.033643 kcal Electronic energy + Delta-G solvation = -18337.772492 eV Core-core repulsion = 15396.515342 eV Total energy + Delta-G solvation = -2941.257150 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72042 -37.69364 -36.49148 -36.17316 -35.17892 -31.53629 -31.20375 -29.21790 -28.55604 -25.91001 -23.33011 -21.97786 -21.02149 -19.78133 -19.42336 -18.59657 -17.47658 -16.98835 -16.80711 -16.21351 -16.02471 -15.57102 -15.24545 -15.06381 -14.56817 -14.18514 -13.66525 -13.58916 -13.40304 -13.02878 -12.99870 -12.70228 -12.58233 -12.54363 -12.45389 -12.07993 -12.01043 -11.72742 -11.45007 -11.33426 -11.24098 -11.06208 -10.22341 -9.93768 -8.96322 -7.51882 0.15281 1.05336 1.14527 1.21741 1.89145 2.42095 2.55390 2.99479 3.29647 3.47571 3.51308 3.97339 4.01606 4.15917 4.25325 4.26314 4.31521 4.47958 4.62336 4.72264 4.79928 4.84848 4.90681 4.96162 4.99010 4.99949 5.03729 5.21994 5.31144 5.39401 5.59350 5.74214 6.01808 6.28398 6.54538 8.21218 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.042529 B = 0.005906 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.210938 B = 4740.146823 C = 4943.122081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.108 3.892 3 Si 0.824 3.176 4 H -0.239 1.239 5 H -0.222 1.222 6 H -0.229 1.229 7 C -1.036 5.036 8 H 0.108 0.892 9 S 2.701 3.299 10 O -1.031 7.031 11 O -1.029 7.029 12 N -1.106 6.106 13 C 0.156 3.844 14 C -0.110 4.110 15 C -0.144 4.144 16 C 0.016 3.984 17 N -0.476 5.476 18 C 0.016 3.984 19 C -0.145 4.145 20 C 0.022 3.978 21 H 0.291 0.709 22 H 0.417 0.583 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.227 -12.447 -1.843 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.109 4.109 3 Si 0.642 3.358 4 H -0.162 1.162 5 H -0.144 1.144 6 H -0.152 1.152 7 C -1.169 5.169 8 H 0.126 0.874 9 S 2.801 3.199 10 O -1.021 7.021 11 O -1.019 7.019 12 N -0.866 5.866 13 C 0.029 3.971 14 C -0.113 4.113 15 C -0.183 4.183 16 C -0.112 4.112 17 N -0.196 5.196 18 C -0.112 4.112 19 C -0.184 4.184 20 C -0.107 4.107 21 H 0.101 0.899 22 H 0.252 0.748 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.651 -12.220 -2.396 16.386 hybrid contribution -0.754 1.193 0.929 1.689 sum 9.897 -11.027 -1.468 14.890 Atomic orbital electron populations 1.70011 1.07456 1.30440 1.40521 1.25160 0.95611 1.01448 0.88647 0.87497 0.82860 0.82907 0.82573 1.16218 1.14375 1.15172 1.30979 1.18068 1.01648 1.66186 0.87419 1.00395 0.75652 0.71624 0.72268 1.93437 1.85264 1.77505 1.45877 1.93374 1.84687 1.77525 1.46297 1.54905 1.73767 1.29810 1.28123 1.20670 0.98806 0.89698 0.87904 1.23775 0.95549 0.94193 0.97820 1.23266 1.02314 0.95612 0.97129 1.23678 1.00940 0.96493 0.90131 1.70037 1.03292 1.31131 1.15151 1.23601 0.94145 0.90776 1.02714 1.23272 0.93843 0.98802 1.02440 1.24527 0.97905 0.90682 0.97615 0.89877 0.74792 0.90744 0.91339 0.90713 0.91064 0.89543 0.89338 0.89426 0.89530 0.91482 0.90871 0.88766 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.20 13.96 21.45 0.30 -48.90 16 2 C 0.11 6.17 5.47 84.66 0.46 6.63 16 3 Si 0.82 40.92 26.54 68.60 1.82 42.74 16 4 H -0.24 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.22 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.23 -11.68 5.61 99.48 0.56 -11.12 16 7 C -1.04 -57.34 10.26 67.73 0.69 -56.64 16 8 H 0.11 6.06 8.06 -2.91 -0.02 6.03 16 9 S 2.70 130.64 4.24 -56.49 -0.24 130.40 16 10 O -1.03 -53.98 16.02 -128.00 -2.05 -56.03 16 11 O -1.03 -53.26 16.30 -128.00 -2.09 -55.35 16 12 N -1.11 -39.53 5.87 -187.48 -1.10 -40.63 16 13 C 0.16 4.81 6.16 86.38 0.53 5.34 16 14 C -0.11 -2.57 1.15 -48.47 -0.06 -2.63 16 15 C -0.14 -2.97 5.60 32.29 0.18 -2.79 16 16 C 0.02 0.29 6.64 86.28 0.57 0.86 16 17 N -0.48 -9.43 6.94 -855.38 -5.94 -15.37 16 18 C 0.02 0.30 6.61 86.36 0.57 0.87 16 19 C -0.14 -3.10 5.95 32.29 0.19 -2.90 16 20 C 0.02 0.46 6.52 87.06 0.57 1.03 16 21 H 0.29 15.10 8.31 -92.71 -0.77 14.33 16 22 H 0.42 12.74 8.20 -96.75 -0.79 11.95 16 23 H 0.07 2.41 7.75 -2.38 -0.02 2.39 16 24 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 25 H 0.07 1.47 7.70 -2.39 -0.02 1.45 16 26 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.32 7.71 -2.39 -0.02 1.30 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.09 1.35 7.71 -2.39 -0.02 1.33 16 31 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.07 1.52 7.82 -2.39 -0.02 1.50 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -66.93 284.31 -5.42 -72.36 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.16 Total: 21.02 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 3.72 Total: -50.23 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -6.74 Total: -104.90 kcal Atomic # 8 Polarization: -107.24 SS G_CDS: -4.14 Total: -111.38 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.82 Total: 42.74 kcal Atomic # 16 Polarization: 130.64 SS G_CDS: -0.24 Total: 130.40 kcal Total: -66.93 -5.42 -72.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715546945.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.678 kcal (2) G-P(sol) polarization free energy of solvation -66.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds