Wall clock time and date at job start Mon Mar 30 2020 04:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00118 * 2 1 4 4 H 1.48499 * 109.47094 * 240.00144 * 3 2 1 5 5 H 1.48495 * 109.47320 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47105 * 120.00347 * 3 2 1 7 7 C 1.37878 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00320 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99846 * 0.02562 * 7 2 1 10 10 O 1.42094 * 106.40584 * 66.45869 * 9 7 2 11 11 O 1.42102 * 106.40220 * 293.53633 * 9 7 2 12 12 N 1.65605 * 107.21776 * 179.97438 * 9 7 2 13 13 C 1.47681 * 134.57875 * 100.35438 * 12 9 7 14 14 C 1.54031 * 86.20576 * 204.22360 * 13 12 9 15 15 C 1.47037 * 134.57362 * 280.32611 * 12 9 7 16 16 C 1.52682 * 113.69267 * 270.18717 * 15 12 9 17 17 C 1.53231 * 109.01115 * 77.74459 * 16 15 12 18 18 N 1.46838 * 109.43281 * 56.74782 * 17 16 15 19 19 C 1.46831 * 111.46752 * 296.45815 * 18 17 16 20 20 C 1.52695 * 113.68115 * 41.18168 * 15 12 9 21 21 H 0.97003 * 119.99914 * 359.97438 * 1 2 3 22 22 H 1.08999 * 113.75660 * 89.89486 * 13 12 9 23 23 H 1.09001 * 113.75591 * 318.54506 * 13 12 9 24 24 H 1.09003 * 113.76928 * 222.46705 * 14 13 12 25 25 H 1.08999 * 113.77102 * 91.07638 * 14 13 12 26 26 H 1.09002 * 109.55120 * 197.60185 * 16 15 12 27 27 H 1.09001 * 109.55590 * 317.88822 * 16 15 12 28 28 H 1.08992 * 109.47437 * 296.76165 * 17 16 15 29 29 H 1.08999 * 109.47662 * 176.73591 * 17 16 15 30 30 H 1.00897 * 110.99549 * 172.16788 * 18 17 16 31 31 H 1.09003 * 109.48165 * 303.56647 * 19 18 17 32 32 H 1.09005 * 109.48122 * 183.53872 * 19 18 17 33 33 H 1.08995 * 109.54864 * 42.12333 * 20 15 12 34 34 H 1.09002 * 109.54795 * 162.30860 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 16 1.1234 -2.7200 0.0005 10 8 0.4517 -2.7956 -1.2494 11 8 0.4508 -2.7950 1.2501 12 7 2.2481 -3.9355 0.0005 13 6 2.8134 -4.8247 1.0353 14 6 4.0375 -4.9547 0.1095 15 6 3.0868 -4.5654 -1.0299 16 6 2.4254 -5.7596 -1.7137 17 6 1.4083 -5.2475 -2.7389 18 7 2.0826 -4.3596 -3.6944 19 6 2.6138 -3.1616 -3.0321 20 6 3.6895 -3.5727 -2.0213 21 1 -0.4850 0.8401 0.0004 22 1 2.2601 -5.7548 1.1649 23 1 3.0274 -4.3210 1.9780 24 1 4.4235 -5.9711 0.0316 25 1 4.8157 -4.2166 0.3038 26 1 3.1842 -6.3566 -2.2196 27 1 1.9159 -6.3705 -0.9685 28 1 0.6201 -4.6971 -2.2252 29 1 0.9732 -6.0925 -3.2726 30 1 1.4660 -4.1099 -4.4531 31 1 1.8063 -2.6447 -2.5135 32 1 3.0507 -2.4975 -3.7779 33 1 4.0428 -2.6915 -1.4860 34 1 4.5237 -4.0405 -2.5443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718641415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:23 Heat of formation + Delta-G solvation = -55.636817 kcal Electronic energy + Delta-G solvation = -19415.225684 eV Core-core repulsion = 16475.373365 eV Total energy + Delta-G solvation = -2939.852319 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85847 -36.07712 -35.03231 -33.98357 -33.11873 -30.44224 -29.71478 -27.67455 -26.12960 -23.58933 -22.59462 -20.58561 -19.60348 -18.31360 -16.86812 -16.34768 -15.73541 -15.13796 -14.80686 -14.64465 -14.15488 -13.77113 -13.46404 -13.10208 -12.65923 -12.45585 -12.03983 -11.81385 -11.53767 -11.47965 -11.32794 -11.23061 -11.10488 -10.74036 -10.64391 -10.32362 -10.25310 -10.01100 -9.91389 -9.45953 -9.26675 -8.86685 -8.20503 -7.69462 -6.72611 -5.33984 2.20037 3.05874 3.10459 3.15908 4.02057 4.40241 4.60339 4.83469 4.85326 5.15138 5.27143 5.42888 5.53257 5.71755 5.76617 5.86321 5.92782 5.96738 6.01943 6.07019 6.15296 6.25877 6.34345 6.35433 6.56967 6.66146 6.69131 6.97561 7.21556 7.36316 7.48367 7.59884 7.90584 7.97906 8.86083 10.20911 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.009740 C = 0.009087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.965879 B = 2873.927870 C = 3080.558427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.014 5.014 8 H 0.102 0.898 9 S 2.727 3.273 10 O -0.995 6.995 11 O -1.007 7.007 12 N -1.036 6.036 13 C 0.125 3.875 14 C -0.142 4.142 15 C 0.184 3.816 16 C -0.109 4.109 17 C 0.042 3.958 18 N -0.687 5.687 19 C 0.017 3.983 20 C -0.117 4.117 21 H 0.291 0.709 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.336 0.664 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.540 -7.912 -2.865 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.147 5.147 8 H 0.120 0.880 9 S 2.831 3.169 10 O -0.986 6.986 11 O -0.998 6.998 12 N -0.872 5.872 13 C -0.001 4.001 14 C -0.181 4.181 15 C 0.096 3.904 16 C -0.149 4.149 17 C -0.088 4.088 18 N -0.317 5.317 19 C -0.112 4.112 20 C -0.156 4.156 21 H 0.101 0.899 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.828 -8.130 -2.800 10.979 hybrid contribution 0.065 1.778 0.174 1.788 sum 6.892 -6.351 -2.626 9.733 Atomic orbital electron populations 1.69888 1.06765 1.30814 1.40208 1.24742 0.94445 1.00719 0.88536 0.86226 0.79927 0.79747 0.79845 1.18768 1.20141 1.18853 1.30546 1.06037 1.11474 1.66682 0.87998 0.99997 0.71535 0.72745 0.72652 1.93225 1.72606 1.87446 1.45293 1.93346 1.72836 1.87685 1.45914 1.60778 1.60607 1.49712 1.16069 1.22425 0.91884 0.93137 0.92649 1.23633 0.96877 1.01523 0.96083 1.20998 0.88348 0.92064 0.89037 1.21668 0.99009 0.96513 0.97669 1.22073 0.96229 0.96404 0.94060 1.60360 1.40727 1.18335 1.12266 1.22571 0.99454 0.91928 0.97244 1.21777 0.98383 0.98919 0.96481 0.89858 0.91131 0.90620 0.91081 0.89284 0.90583 0.91551 0.91870 0.91956 0.84755 0.88678 0.91888 0.90435 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.76 13.19 55.43 0.73 -24.03 16 2 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 3 Si 0.92 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -1.01 -27.63 9.75 30.60 0.30 -27.33 16 8 H 0.10 2.56 7.50 -52.49 -0.39 2.16 16 9 S 2.73 72.53 4.94 -107.50 -0.53 72.00 16 10 O -1.00 -27.53 12.47 -57.17 -0.71 -28.24 16 11 O -1.01 -30.36 17.95 -57.17 -1.03 -31.39 16 12 N -1.04 -21.23 3.76 -105.28 -0.40 -21.63 16 13 C 0.13 2.04 8.57 -2.92 -0.03 2.01 16 14 C -0.14 -1.94 7.45 -26.02 -0.19 -2.14 16 15 C 0.18 3.11 1.01 -131.70 -0.13 2.98 16 16 C -0.11 -1.68 5.44 -26.77 -0.15 -1.83 16 17 C 0.04 0.72 6.52 -3.74 -0.02 0.70 16 18 N -0.69 -11.70 6.80 -113.62 -0.77 -12.47 16 19 C 0.02 0.32 6.41 -3.74 -0.02 0.30 16 20 C -0.12 -2.01 5.43 -26.77 -0.15 -2.15 16 21 H 0.29 7.70 8.31 -40.82 -0.34 7.36 16 22 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 23 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 25 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 28 H 0.06 1.32 5.68 -51.93 -0.30 1.03 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.34 5.32 8.90 -39.29 -0.35 4.97 16 31 H 0.10 2.21 4.12 -51.93 -0.21 1.99 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.38 7.83 -51.93 -0.41 0.97 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -33.50 280.46 -8.53 -42.03 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -4.54 Total: 7.90 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -0.49 Total: -23.87 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.44 Total: -58.13 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -1.74 Total: -59.63 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 72.53 SS G_CDS: -0.53 Total: 72.00 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.50 -8.53 -42.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718641415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.605 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds