Wall clock time and date at job start Mon Mar 30 2020 04:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00118 * 2 1 4 4 H 1.48499 * 109.47094 * 240.00144 * 3 2 1 5 5 H 1.48495 * 109.47320 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47105 * 120.00347 * 3 2 1 7 7 C 1.37878 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00320 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99846 * 0.02562 * 7 2 1 10 10 O 1.42094 * 106.40584 * 66.45869 * 9 7 2 11 11 O 1.42102 * 106.40220 * 293.53633 * 9 7 2 12 12 N 1.65605 * 107.21776 * 179.97438 * 9 7 2 13 13 C 1.47681 * 134.57875 * 100.35438 * 12 9 7 14 14 C 1.54031 * 86.20576 * 204.22360 * 13 12 9 15 15 C 1.47037 * 134.57362 * 280.32611 * 12 9 7 16 16 C 1.52682 * 113.69267 * 270.18717 * 15 12 9 17 17 C 1.53231 * 109.01115 * 77.74459 * 16 15 12 18 18 N 1.46838 * 109.43281 * 56.74782 * 17 16 15 19 19 C 1.46831 * 111.46752 * 296.45815 * 18 17 16 20 20 C 1.52695 * 113.68115 * 41.18168 * 15 12 9 21 21 H 0.97003 * 119.99914 * 359.97438 * 1 2 3 22 22 H 1.08999 * 113.75660 * 89.89486 * 13 12 9 23 23 H 1.09001 * 113.75591 * 318.54506 * 13 12 9 24 24 H 1.09003 * 113.76928 * 222.46705 * 14 13 12 25 25 H 1.08999 * 113.77102 * 91.07638 * 14 13 12 26 26 H 1.09002 * 109.55120 * 197.60185 * 16 15 12 27 27 H 1.09001 * 109.55590 * 317.88822 * 16 15 12 28 28 H 1.08992 * 109.47437 * 296.76165 * 17 16 15 29 29 H 1.08999 * 109.47662 * 176.73591 * 17 16 15 30 30 H 1.00897 * 110.99549 * 172.16788 * 18 17 16 31 31 H 1.09003 * 109.48165 * 303.56647 * 19 18 17 32 32 H 1.09005 * 109.48122 * 183.53872 * 19 18 17 33 33 H 1.08995 * 109.54864 * 42.12333 * 20 15 12 34 34 H 1.09002 * 109.54795 * 162.30860 * 20 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 16 1.1234 -2.7200 0.0005 10 8 0.4517 -2.7956 -1.2494 11 8 0.4508 -2.7950 1.2501 12 7 2.2481 -3.9355 0.0005 13 6 2.8134 -4.8247 1.0353 14 6 4.0375 -4.9547 0.1095 15 6 3.0868 -4.5654 -1.0299 16 6 2.4254 -5.7596 -1.7137 17 6 1.4083 -5.2475 -2.7389 18 7 2.0826 -4.3596 -3.6944 19 6 2.6138 -3.1616 -3.0321 20 6 3.6895 -3.5727 -2.0213 21 1 -0.4850 0.8401 0.0004 22 1 2.2601 -5.7548 1.1649 23 1 3.0274 -4.3210 1.9780 24 1 4.4235 -5.9711 0.0316 25 1 4.8157 -4.2166 0.3038 26 1 3.1842 -6.3566 -2.2196 27 1 1.9159 -6.3705 -0.9685 28 1 0.6201 -4.6971 -2.2252 29 1 0.9732 -6.0925 -3.2726 30 1 1.4660 -4.1099 -4.4531 31 1 1.8063 -2.6447 -2.5135 32 1 3.0507 -2.4975 -3.7779 33 1 4.0428 -2.6915 -1.4860 34 1 4.5237 -4.0405 -2.5443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718641415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:23 Heat of formation + Delta-G solvation = -83.857802 kcal Electronic energy + Delta-G solvation = -19416.449437 eV Core-core repulsion = 16475.373365 eV Total energy + Delta-G solvation = -2941.076072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18761 -37.72542 -36.89484 -36.08437 -35.20405 -31.78399 -31.06139 -29.06414 -28.23670 -24.90727 -23.92453 -21.95061 -21.23686 -20.21388 -18.52872 -18.12064 -17.26380 -16.98428 -16.38504 -16.28613 -15.68536 -15.32936 -15.06644 -14.67365 -14.17419 -13.98925 -13.82081 -13.33371 -13.09346 -13.03533 -12.92968 -12.81760 -12.57221 -12.49241 -12.37674 -12.17088 -11.74509 -11.68958 -11.34425 -11.26446 -10.88058 -10.79481 -9.72338 -9.16691 -8.76540 -7.48617 0.30307 1.29704 1.31628 1.44334 2.17113 2.55208 2.79840 3.47206 3.58980 3.72272 3.94727 3.97663 4.04626 4.15923 4.44650 4.53013 4.64567 4.70078 4.70825 4.82105 4.89727 4.98156 5.08845 5.09637 5.17344 5.24370 5.29898 5.40551 5.51396 5.72267 5.82581 6.07327 6.17890 6.54987 6.76210 8.18017 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.009740 C = 0.009087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.965879 B = 2873.927870 C = 3080.558427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.985 3.015 4 H -0.248 1.248 5 H -0.265 1.265 6 H -0.251 1.251 7 C -1.029 5.029 8 H 0.116 0.884 9 S 2.727 3.273 10 O -1.021 7.021 11 O -1.059 7.059 12 N -1.046 6.046 13 C 0.111 3.889 14 C -0.113 4.113 15 C 0.172 3.828 16 C -0.107 4.107 17 C 0.035 3.965 18 N -0.672 5.672 19 C 0.011 3.989 20 C -0.117 4.117 21 H 0.297 0.703 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.116 0.884 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.018 0.982 29 H 0.087 0.913 30 H 0.339 0.661 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.534 -9.036 -3.338 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.803 3.197 4 H -0.171 1.171 5 H -0.189 1.189 6 H -0.175 1.175 7 C -1.163 5.163 8 H 0.134 0.866 9 S 2.832 3.168 10 O -1.011 7.011 11 O -1.050 7.050 12 N -0.887 5.887 13 C -0.014 4.014 14 C -0.153 4.153 15 C 0.085 3.915 16 C -0.146 4.146 17 C -0.095 4.095 18 N -0.302 5.302 19 C -0.118 4.118 20 C -0.155 4.155 21 H 0.107 0.893 22 H 0.109 0.891 23 H 0.091 0.909 24 H 0.134 0.866 25 H 0.116 0.884 26 H 0.128 0.872 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.105 0.895 30 H 0.155 0.845 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.813 -9.271 -3.274 13.891 hybrid contribution -0.869 2.005 0.273 2.203 sum 8.944 -7.265 -3.001 11.907 Atomic orbital electron populations 1.69995 1.08781 1.32192 1.41869 1.25980 0.95293 1.05199 0.87616 0.85235 0.78876 0.74732 0.80837 1.17107 1.18949 1.17489 1.30885 1.06832 1.12357 1.66198 0.86589 0.99517 0.72226 0.73690 0.71322 1.93215 1.74183 1.88035 1.45618 1.93265 1.75030 1.88703 1.47968 1.60443 1.59696 1.49256 1.19287 1.22878 0.93203 0.92895 0.92411 1.23522 0.95252 1.04257 0.92236 1.21485 0.88457 0.92098 0.89503 1.21735 0.99272 0.96177 0.97410 1.22163 0.95981 0.96639 0.94672 1.60442 1.40521 1.17299 1.11916 1.22515 0.98903 0.92632 0.97796 1.21807 0.98577 0.98945 0.96177 0.89297 0.89128 0.90888 0.86583 0.88405 0.87199 0.90545 0.96373 0.89488 0.84472 0.93177 0.91050 0.91632 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.42 13.19 21.45 0.28 -54.14 16 2 C 0.07 4.03 5.46 84.66 0.46 4.49 16 3 Si 0.99 41.76 29.54 68.60 2.03 43.79 16 4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 7 C -1.03 -57.28 9.75 67.73 0.66 -56.62 16 8 H 0.12 5.85 7.50 -2.91 -0.02 5.83 16 9 S 2.73 150.28 4.94 -56.49 -0.28 150.01 16 10 O -1.02 -59.44 12.47 -128.00 -1.60 -61.04 16 11 O -1.06 -66.86 17.95 -128.00 -2.30 -69.16 16 12 N -1.05 -42.37 3.76 -487.00 -1.83 -44.20 16 13 C 0.11 3.37 8.57 86.46 0.74 4.11 16 14 C -0.11 -2.61 7.45 31.10 0.23 -2.37 16 15 C 0.17 5.35 1.01 3.39 0.00 5.35 16 16 C -0.11 -2.94 5.44 30.57 0.17 -2.78 16 17 C 0.04 1.17 6.52 86.39 0.56 1.73 16 18 N -0.67 -22.06 6.80 -513.37 -3.49 -25.55 16 19 C 0.01 0.42 6.41 86.39 0.55 0.98 16 20 C -0.12 -3.73 5.43 30.57 0.17 -3.57 16 21 H 0.30 16.30 8.31 -92.71 -0.77 15.53 16 22 H 0.09 2.36 7.76 -2.39 -0.02 2.34 16 23 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.12 1.75 8.09 -2.39 -0.02 1.73 16 25 H 0.10 2.12 8.09 -2.39 -0.02 2.11 16 26 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 1.95 7.48 -2.39 -0.02 1.93 16 28 H 0.02 0.77 5.68 -2.39 -0.01 0.76 16 29 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.34 10.59 8.90 -89.70 -0.80 9.79 16 31 H 0.05 2.40 4.12 -2.39 -0.01 2.39 16 32 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.07 2.24 7.83 -2.39 -0.02 2.22 16 34 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -77.31 280.46 -3.32 -80.63 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.32 Total: 28.34 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 3.55 Total: -48.68 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -5.04 Total: -123.89 kcal Atomic # 8 Polarization: -126.30 SS G_CDS: -3.89 Total: -130.20 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 150.28 SS G_CDS: -0.28 Total: 150.01 kcal Total: -77.31 -3.32 -80.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718641415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.228 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds