Wall clock time and date at job start Mon Mar 30 2020 04:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46469 * 111.00385 * 66.04145 * 13 12 10 15 15 C 1.53250 * 109.86113 * 162.23581 * 14 13 12 16 16 S 1.81896 * 108.50352 * 62.00445 * 15 14 13 17 17 C 1.81892 * 101.91779 * 308.69351 * 16 15 14 18 18 H 1.09002 * 109.63038 * 291.60387 * 17 16 15 19 19 C 1.52997 * 109.63218 * 171.20878 * 17 16 15 20 20 O 1.42901 * 109.47239 * 295.00056 * 19 17 16 21 21 C 1.46468 * 110.99852 * 300.06240 * 13 12 10 22 22 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 24 24 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 25 25 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 26 26 H 1.08998 * 109.40791 * 282.35601 * 14 13 12 27 27 H 1.08998 * 109.40213 * 42.12001 * 14 13 12 28 28 H 1.09001 * 109.63269 * 181.70941 * 15 14 13 29 29 H 1.09000 * 109.63023 * 302.10062 * 15 14 13 30 30 H 1.08997 * 109.47283 * 55.00308 * 19 17 16 31 31 H 1.09007 * 109.46863 * 175.00270 * 19 17 16 32 32 H 0.96695 * 113.99709 * 180.02562 * 20 19 17 33 33 H 1.08999 * 109.40986 * 317.88275 * 21 13 12 34 34 H 1.08997 * 109.40644 * 77.64955 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9614 -6.0117 1.2681 15 6 3.6080 -7.3894 1.4479 16 16 4.7645 -7.6683 0.0719 17 6 3.7225 -7.3051 -1.3740 18 1 2.9551 -8.0727 -1.4744 19 6 4.5870 -7.2744 -2.6359 20 8 5.5101 -6.1865 -2.5546 21 6 3.0600 -5.9390 -1.1653 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3906 0.0005 24 1 0.6167 -4.9162 0.9030 25 1 0.6174 -4.9252 -0.8769 26 1 3.7385 -5.2481 1.2377 27 1 2.2928 -5.8133 2.1058 28 1 4.1497 -7.4192 2.3933 29 1 2.8365 -8.1594 1.4436 30 1 5.1367 -8.2116 -2.7228 31 1 3.9490 -7.1449 -3.5103 32 1 6.0915 -6.1059 -3.3230 33 1 2.4610 -5.6895 -2.0411 34 1 3.8303 -5.1804 -1.0266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719999244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:05 Heat of formation + Delta-G solvation = -76.063220 kcal Electronic energy + Delta-G solvation = -18054.532006 eV Core-core repulsion = 15113.793932 eV Total energy + Delta-G solvation = -2940.738074 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.16351 -37.24872 -36.21865 -33.88011 -31.91604 -31.38425 -30.64263 -26.95640 -25.21400 -23.92930 -21.79476 -20.82363 -19.24871 -17.93064 -17.60596 -16.61080 -15.82157 -15.36256 -14.89598 -14.69142 -14.59921 -14.00431 -13.96247 -13.65466 -13.09143 -12.99774 -12.72939 -12.07609 -11.88382 -11.56268 -11.47932 -11.32830 -11.16834 -10.76663 -10.46794 -10.30563 -10.25607 -10.00978 -9.49264 -9.41123 -9.19309 -8.00554 -7.57446 -7.32279 -6.45614 -3.86761 1.97414 2.74830 3.16915 3.23393 3.28104 3.82767 4.10736 4.15834 4.29217 4.93296 5.00722 5.06641 5.21879 5.28201 5.34144 5.45170 5.53155 5.54716 5.58690 5.82588 5.94867 5.99709 6.04230 6.21119 6.51697 6.79951 7.22269 7.38057 7.51274 7.71029 8.00710 8.55919 9.13168 9.48749 9.99793 10.71058 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.005227 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.671605 B = 5355.710820 C = 5707.558074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.302 4.302 8 H 0.102 0.898 9 N -0.557 5.557 10 C 0.404 3.596 11 O -0.588 6.588 12 C 0.047 3.953 13 N -0.530 5.530 14 C 0.046 3.954 15 C -0.074 4.074 16 S -0.260 6.260 17 C -0.042 4.042 18 H 0.098 0.902 19 C 0.097 3.903 20 O -0.552 6.552 21 C 0.051 3.949 22 H 0.273 0.727 23 H 0.392 0.608 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.375 0.625 33 H 0.069 0.931 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.962 -13.742 -2.715 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.120 0.880 9 N -0.193 5.193 10 C 0.189 3.811 11 O -0.474 6.474 12 C -0.085 4.085 13 N -0.253 5.253 14 C -0.083 4.083 15 C -0.222 4.222 16 S -0.034 6.034 17 C -0.171 4.171 18 H 0.116 0.884 19 C 0.017 3.983 20 O -0.357 6.357 21 C -0.077 4.077 22 H 0.083 0.917 23 H 0.226 0.774 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.087 0.913 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.139 -14.243 -2.111 14.982 hybrid contribution -0.930 1.816 -0.522 2.106 sum 3.208 -12.428 -2.634 13.103 Atomic orbital electron populations 1.69603 1.05958 1.28369 1.50147 1.25277 0.95620 0.99790 0.97109 0.85922 0.78794 0.80424 0.79123 1.19876 1.20913 1.19874 1.19679 0.93381 0.82378 1.47716 0.87997 1.42012 1.09232 1.04865 1.63153 1.21055 0.88937 0.85939 0.85175 1.90488 1.13666 1.86873 1.56362 1.22044 0.94912 0.87990 1.03519 1.61632 1.19351 1.41685 1.02625 1.22296 0.98585 0.95511 0.91949 1.23486 0.99797 1.00715 0.98251 1.86725 1.23793 1.90345 1.02515 1.23336 0.97916 1.01736 0.94106 0.88403 1.21821 0.91279 0.89860 0.95291 1.86713 1.51686 1.50906 1.46349 1.22373 0.97746 0.95252 0.92370 0.91744 0.77434 0.89254 0.89275 0.90226 0.90737 0.88048 0.89845 0.93136 0.92473 0.77903 0.91296 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -13.95 5.29 -10.96 -0.06 -14.00 16 10 C 0.40 9.30 7.22 -10.99 -0.08 9.22 16 11 O -0.59 -15.37 11.58 5.55 0.06 -15.31 16 12 C 0.05 0.83 5.73 -4.98 -0.03 0.80 16 13 N -0.53 -8.95 4.58 -236.48 -1.08 -10.04 16 14 C 0.05 0.77 4.83 -3.93 -0.02 0.75 16 15 C -0.07 -1.04 6.69 37.29 0.25 -0.79 16 16 S -0.26 -4.03 21.56 -107.50 -2.32 -6.35 16 17 C -0.04 -0.60 3.15 -26.60 -0.08 -0.69 16 18 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.10 1.18 6.67 37.16 0.25 1.43 16 20 O -0.55 -7.80 12.57 -35.23 -0.44 -8.24 16 21 C 0.05 0.90 3.74 -3.93 -0.01 0.88 16 22 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 23 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 24 H 0.09 1.42 7.93 -51.93 -0.41 1.01 16 25 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 26 H 0.08 1.65 6.18 -51.93 -0.32 1.33 16 27 H 0.07 1.16 7.82 -51.93 -0.41 0.76 16 28 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.37 3.35 9.12 45.56 0.42 3.77 16 33 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 34 H 0.10 2.22 5.26 -51.93 -0.27 1.95 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -31.84 289.07 -7.52 -39.36 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -3.77 Total: 14.16 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 0.03 Total: 3.63 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.42 Total: -47.66 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.38 Total: -23.55 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -2.32 Total: -6.35 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.84 -7.52 -39.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719999244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.704 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds