Wall clock time and date at job start Mon Mar 30 2020 04:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47459 * 239.99306 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47211 * 119.99744 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 N 1.46899 * 109.46987 * 179.97438 * 12 10 9 14 14 C 1.46469 * 111.00385 * 66.04145 * 13 12 10 15 15 C 1.53250 * 109.86113 * 162.23581 * 14 13 12 16 16 S 1.81896 * 108.50352 * 62.00445 * 15 14 13 17 17 C 1.81892 * 101.91779 * 308.69351 * 16 15 14 18 18 H 1.09002 * 109.63038 * 291.60387 * 17 16 15 19 19 C 1.52997 * 109.63218 * 171.20878 * 17 16 15 20 20 O 1.42901 * 109.47239 * 295.00056 * 19 17 16 21 21 C 1.46468 * 110.99852 * 300.06240 * 13 12 10 22 22 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 24 24 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 25 25 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 26 26 H 1.08998 * 109.40791 * 282.35601 * 14 13 12 27 27 H 1.08998 * 109.40213 * 42.12001 * 14 13 12 28 28 H 1.09001 * 109.63269 * 181.70941 * 15 14 13 29 29 H 1.09000 * 109.63023 * 302.10062 * 15 14 13 30 30 H 1.08997 * 109.47283 * 55.00308 * 19 17 16 31 31 H 1.09007 * 109.46863 * 175.00270 * 19 17 16 32 32 H 0.96695 * 113.99709 * 180.02562 * 20 19 17 33 33 H 1.08999 * 109.40986 * 317.88275 * 21 13 12 34 34 H 1.08997 * 109.40644 * 77.64955 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2124 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 7 2.1982 -5.9795 0.0184 14 6 2.9614 -6.0117 1.2681 15 6 3.6080 -7.3894 1.4479 16 16 4.7645 -7.6683 0.0719 17 6 3.7225 -7.3051 -1.3740 18 1 2.9551 -8.0727 -1.4744 19 6 4.5870 -7.2744 -2.6359 20 8 5.5101 -6.1865 -2.5546 21 6 3.0600 -5.9390 -1.1653 22 1 -0.4850 0.8400 -0.0004 23 1 0.3533 -2.3906 0.0005 24 1 0.6167 -4.9162 0.9030 25 1 0.6174 -4.9252 -0.8769 26 1 3.7385 -5.2481 1.2377 27 1 2.2928 -5.8133 2.1058 28 1 4.1497 -7.4192 2.3933 29 1 2.8365 -8.1594 1.4436 30 1 5.1367 -8.2116 -2.7228 31 1 3.9490 -7.1449 -3.5103 32 1 6.0915 -6.1059 -3.3230 33 1 2.4610 -5.6895 -2.0411 34 1 3.8303 -5.1804 -1.0266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719999244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:05 Heat of formation + Delta-G solvation = -102.417348 kcal Electronic energy + Delta-G solvation = -18055.674806 eV Core-core repulsion = 15113.793932 eV Total energy + Delta-G solvation = -2941.880875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83060 -38.58517 -37.54731 -35.85747 -33.38211 -33.06400 -32.03853 -28.44885 -26.77995 -25.50737 -22.99697 -22.18466 -21.04129 -19.90101 -18.66117 -18.11575 -17.40250 -16.65175 -16.47820 -16.32405 -15.84697 -15.64098 -15.52257 -15.19696 -14.52395 -14.21325 -14.02261 -13.67643 -13.29149 -13.23715 -13.00396 -12.81998 -12.52341 -12.46414 -12.19322 -12.14464 -11.60986 -11.39524 -11.01247 -10.97046 -10.55811 -10.02022 -9.18927 -8.55937 -8.47917 -5.97861 0.82973 1.35948 1.38729 1.49341 1.59983 2.00469 2.27324 2.78413 3.17683 3.21808 3.36892 3.85168 3.96173 4.07393 4.23252 4.25723 4.33259 4.46336 4.48631 4.55800 4.61681 4.62702 4.70865 4.74438 5.09130 5.30725 5.39856 5.77568 5.97348 5.98931 6.57166 6.94988 7.10137 7.52948 8.08994 8.67202 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.030241 B = 0.005227 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.671605 B = 5355.710820 C = 5707.558074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.075 0.925 9 N -0.569 5.569 10 C 0.404 3.596 11 O -0.620 6.620 12 C 0.055 3.945 13 N -0.515 5.515 14 C 0.047 3.953 15 C -0.061 4.061 16 S -0.296 6.296 17 C -0.034 4.034 18 H 0.120 0.880 19 C 0.095 3.905 20 O -0.585 6.585 21 C 0.056 3.944 22 H 0.278 0.722 23 H 0.396 0.604 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.034 0.966 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.394 0.606 33 H 0.072 0.928 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 -14.883 -2.983 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.464 4.464 8 H 0.093 0.907 9 N -0.206 5.206 10 C 0.191 3.809 11 O -0.508 6.508 12 C -0.077 4.077 13 N -0.237 5.237 14 C -0.083 4.083 15 C -0.210 4.210 16 S -0.070 6.070 17 C -0.163 4.163 18 H 0.138 0.862 19 C 0.016 3.984 20 O -0.393 6.393 21 C -0.073 4.073 22 H 0.088 0.912 23 H 0.230 0.770 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.243 0.757 33 H 0.090 0.910 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.272 -15.407 -2.391 15.930 hybrid contribution -0.623 2.120 -0.447 2.255 sum 2.648 -13.286 -2.838 13.842 Atomic orbital electron populations 1.69657 1.06731 1.29391 1.50057 1.25993 0.96509 1.02291 0.96214 0.85043 0.77838 0.76949 0.78839 1.19875 1.19250 1.19892 1.19588 0.92548 0.84271 1.50021 0.90722 1.42073 1.09329 1.04866 1.64311 1.22146 0.88821 0.87188 0.82718 1.90504 1.15624 1.87687 1.56968 1.22166 0.94860 0.84796 1.05878 1.61792 1.19024 1.40256 1.02622 1.22267 0.97632 0.96010 0.92363 1.23480 0.99881 0.99365 0.98249 1.86861 1.25748 1.90145 1.04242 1.23438 0.98330 1.00164 0.94390 0.86181 1.21971 0.91393 0.90159 0.94863 1.86665 1.52645 1.51904 1.48118 1.22232 0.96485 0.96017 0.92556 0.91230 0.76965 0.86689 0.86894 0.94772 0.89400 0.86564 0.87589 0.91210 0.90108 0.75693 0.90989 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.37 13.05 21.66 0.28 -49.08 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.33 -19.05 9.68 84.04 0.81 -18.23 16 8 H 0.07 4.58 7.16 -2.91 -0.02 4.56 16 9 N -0.57 -28.93 5.29 -306.98 -1.62 -30.55 16 10 C 0.40 18.84 7.22 87.66 0.63 19.48 16 11 O -0.62 -33.65 11.58 -3.07 -0.04 -33.69 16 12 C 0.05 1.84 5.73 85.56 0.49 2.33 16 13 N -0.51 -16.59 4.58 -902.10 -4.14 -20.73 16 14 C 0.05 1.53 4.83 86.47 0.42 1.95 16 15 C -0.06 -1.62 6.69 72.07 0.48 -1.14 16 16 S -0.30 -8.86 21.56 -56.49 -1.22 -10.08 16 17 C -0.03 -0.93 3.15 30.68 0.10 -0.83 16 18 H 0.12 2.73 8.14 -2.39 -0.02 2.72 16 19 C 0.10 2.13 6.67 71.98 0.48 2.61 16 20 O -0.59 -16.32 12.57 -148.98 -1.87 -18.19 16 21 C 0.06 1.92 3.74 86.47 0.32 2.25 16 22 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 23 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 24 H 0.12 3.35 7.93 -2.39 -0.02 3.33 16 25 H 0.11 3.33 8.07 -2.39 -0.02 3.32 16 26 H 0.03 1.45 6.18 -2.39 -0.01 1.44 16 27 H 0.09 2.60 7.82 -2.39 -0.02 2.59 16 28 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.39 6.84 9.12 -74.06 -0.68 6.16 16 33 H 0.07 2.36 7.91 -2.39 -0.02 2.34 16 34 H 0.05 2.40 5.26 -2.39 -0.01 2.39 16 Total: -1.00 -70.46 289.07 -2.65 -73.11 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.28 Total: 35.60 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.20 Total: 8.35 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -5.48 Total: -100.37 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -1.91 Total: -51.88 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.22 Total: -10.08 kcal Total: -70.46 -2.65 -73.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719999244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.308 kcal (2) G-P(sol) polarization free energy of solvation -70.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds