Wall clock time and date at job start Mon Mar 30 2020 04:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99824 * 2 1 4 4 H 1.48501 * 109.47367 * 239.99730 * 3 2 1 5 5 H 1.48498 * 109.47311 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46831 * 119.99735 * 3 2 1 7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.51973 * 324.99927 * 14 13 11 16 16 C 1.53096 * 109.52074 * 85.12190 * 14 13 11 17 17 O 1.42900 * 109.41634 * 62.29768 * 16 14 13 18 18 C 1.42907 * 114.09559 * 61.15394 * 17 16 14 19 19 C 1.53084 * 109.41721 * 298.84496 * 18 17 16 20 20 C 1.53172 * 109.52509 * 204.87131 * 14 13 11 21 21 H 1.09000 * 109.54620 * 177.20981 * 20 14 13 22 22 N 1.46904 * 109.54199 * 56.93928 * 20 14 13 23 23 H 0.96996 * 120.00393 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47216 * 300.00172 * 10 9 7 25 25 H 1.09001 * 109.46620 * 60.00275 * 10 9 7 26 26 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 27 27 H 1.09000 * 109.47714 * 182.27877 * 16 14 13 28 28 H 1.09002 * 109.48241 * 302.30146 * 16 14 13 29 29 H 1.09007 * 109.47928 * 58.83063 * 18 17 16 30 30 H 1.08999 * 109.48126 * 178.85659 * 18 17 16 31 31 H 1.09003 * 109.52662 * 177.51505 * 19 18 17 32 32 H 1.09000 * 109.52382 * 297.64143 * 19 18 17 33 33 H 1.00898 * 111.00228 * 180.02562 * 22 20 14 34 34 H 1.00902 * 111.00258 * 303.95642 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3306 -7.7151 -0.0019 15 1 1.4142 -7.7613 0.5863 16 6 2.0378 -8.1504 -1.4402 17 8 3.2511 -8.1430 -2.1951 18 6 4.2504 -9.0379 -1.7022 19 6 4.6320 -8.6381 -0.2746 20 6 3.3770 -8.6540 0.6059 21 1 2.9762 -9.6666 0.6507 22 7 3.7186 -8.1984 1.9601 23 1 -0.4850 0.8400 -0.0004 24 1 3.1246 -3.7312 -0.8905 25 1 3.1245 -3.7312 0.8895 26 1 3.8010 -6.1834 -0.0004 27 1 1.6178 -9.1563 -1.4371 28 1 1.3248 -7.4601 -1.8910 29 1 3.8593 -10.0553 -1.7026 30 1 5.1315 -8.9868 -2.3419 31 1 5.3618 -9.3456 0.1191 32 1 5.0617 -7.6364 -0.2793 33 1 4.4081 -8.8024 2.3817 34 1 4.0352 -7.2404 1.9502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722029097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:26 Heat of formation + Delta-G solvation = -114.235233 kcal Electronic energy + Delta-G solvation = -17599.113902 eV Core-core repulsion = 14656.720565 eV Total energy + Delta-G solvation = -2942.393337 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.44550 -39.67186 -36.69009 -34.68532 -34.56767 -31.96936 -31.10567 -29.59647 -27.64867 -24.86372 -24.43294 -22.33281 -20.66794 -19.90623 -18.19764 -17.60184 -17.18279 -16.94445 -16.87469 -16.49051 -16.34809 -15.80491 -15.65587 -14.88168 -14.80888 -14.53088 -13.89512 -13.84268 -13.46492 -13.27003 -13.16744 -12.86397 -12.62959 -12.37157 -12.02907 -11.77362 -11.65372 -11.12589 -11.02054 -10.89082 -10.27898 -9.93275 -9.62135 -8.66065 -8.33991 -6.12216 1.26772 1.44253 1.46776 1.56650 1.62051 2.23621 2.28895 2.92853 3.00040 3.30665 3.40797 3.62267 3.74504 3.87770 3.98437 4.14263 4.29654 4.34930 4.42220 4.49240 4.56913 4.67054 4.74906 4.81782 4.99552 5.12825 5.41565 5.43552 6.13232 6.19876 6.22663 6.45642 6.54630 7.07017 7.23469 8.75094 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.037988 B = 0.004265 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.893636 B = 6563.013399 C = 6618.766646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.698 5.698 14 C 0.118 3.882 15 H 0.080 0.920 16 C 0.053 3.947 17 O -0.397 6.397 18 C 0.053 3.947 19 C -0.185 4.185 20 C 0.094 3.906 21 H 0.110 0.890 22 N -0.849 5.849 23 H 0.271 0.729 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.408 0.592 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.357 0.643 34 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.075 -19.778 -0.035 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.280 4.280 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.352 5.352 14 C 0.012 3.988 15 H 0.098 0.902 16 C -0.025 4.025 17 O -0.316 6.316 18 C -0.024 4.024 19 C -0.224 4.224 20 C -0.019 4.019 21 H 0.128 0.872 22 N -0.380 5.380 23 H 0.080 0.920 24 H 0.123 0.877 25 H 0.128 0.872 26 H 0.245 0.755 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.172 0.828 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.206 -20.065 0.010 22.983 hybrid contribution 2.641 1.417 -0.196 3.003 sum 13.847 -18.648 -0.187 23.228 Atomic orbital electron populations 1.70173 1.07996 1.28696 1.47929 1.26119 0.95945 1.03290 0.93666 0.85008 0.77818 0.75693 0.79490 1.18710 1.20335 1.18603 1.23179 0.95335 0.92085 1.59047 0.89994 1.85559 1.10397 0.99098 1.97036 1.23357 1.03612 0.94564 1.06498 1.20016 0.86271 0.86584 0.74835 1.90682 1.17261 1.86004 1.50190 1.45610 1.09753 1.04610 1.75190 1.21719 0.98992 0.81200 0.96885 0.90203 1.22943 0.86934 1.01918 0.90747 1.87988 1.25073 1.64693 1.53846 1.22784 0.91791 0.93153 0.94631 1.23086 0.98991 1.03494 0.96874 1.21717 0.93766 0.98532 0.87850 0.87249 1.58773 1.51924 1.08064 1.19230 0.91969 0.87717 0.87246 0.75457 0.89767 0.90931 0.91326 0.87639 0.87907 0.91465 0.82833 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 2 C 0.01 0.84 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.55 -31.73 9.50 67.95 0.65 -31.08 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 10 C -0.13 -5.24 6.16 71.24 0.44 -4.81 16 11 C 0.54 20.30 7.82 87.66 0.69 20.98 16 12 O -0.56 -26.45 15.53 -3.04 -0.05 -26.50 16 13 N -0.70 -18.20 4.21 -442.10 -1.86 -20.06 16 14 C 0.12 2.69 2.50 45.08 0.11 2.80 16 15 H 0.08 2.28 7.58 -2.39 -0.02 2.27 16 16 C 0.05 1.21 6.45 72.01 0.46 1.67 16 17 O -0.40 -8.75 10.67 -148.98 -1.59 -10.33 16 18 C 0.05 0.69 6.84 72.01 0.49 1.18 16 19 C -0.18 -1.94 5.53 30.73 0.17 -1.77 16 20 C 0.09 1.34 3.12 45.08 0.14 1.48 16 21 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 22 N -0.85 -12.52 9.26 -167.99 -1.56 -14.08 16 23 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 24 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 25 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 26 H 0.41 8.32 6.74 -92.71 -0.62 7.70 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.79 6.73 -2.39 -0.02 0.78 16 33 H 0.36 3.45 9.04 -89.70 -0.81 2.64 16 34 H 0.34 5.35 7.97 -89.69 -0.72 4.64 16 Total: -1.00 -77.15 297.07 -1.30 -78.44 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -1.01 Total: 20.65 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 3.62 Total: -8.24 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -3.13 Total: -90.43 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.64 Total: -36.84 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -77.15 -1.30 -78.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722029097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.791 kcal (2) G-P(sol) polarization free energy of solvation -77.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds