Wall clock time and date at job start Mon Mar 30 2020 04:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47522 * 300.00351 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00717 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09007 * 109.52089 * 325.13031 * 14 13 11 16 16 C 1.53092 * 109.52100 * 85.31682 * 14 13 11 17 17 O 1.42907 * 109.41688 * 177.51569 * 16 14 13 18 18 C 1.42897 * 114.09576 * 298.84288 * 17 16 14 19 19 C 1.53096 * 109.41476 * 61.15862 * 18 17 16 20 20 C 1.53171 * 109.52718 * 205.00329 * 14 13 11 21 21 H 1.09001 * 109.54677 * 303.07112 * 20 14 13 22 22 N 1.46904 * 109.54522 * 63.24578 * 20 14 13 23 23 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 25 25 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 26 26 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 27 27 H 1.09003 * 109.48241 * 297.50145 * 16 14 13 28 28 H 1.08995 * 109.48217 * 57.53356 * 16 14 13 29 29 H 1.08998 * 109.48629 * 301.17322 * 18 17 16 30 30 H 1.09006 * 109.48088 * 181.13759 * 18 17 16 31 31 H 1.09006 * 109.52001 * 182.48352 * 19 18 17 32 32 H 1.09001 * 109.52184 * 62.29384 * 19 18 17 33 33 H 1.00895 * 111.00400 * 179.97438 * 22 20 14 34 34 H 1.00902 * 110.99990 * 303.96134 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 1 1.4145 -7.7634 0.5748 16 6 2.0382 -8.1458 -1.4537 17 8 1.5922 -9.5035 -1.4621 18 6 2.5488 -10.4349 -0.9527 19 6 2.8616 -10.0961 0.5071 20 6 3.3774 -8.6561 0.5896 21 1 4.3104 -8.5692 0.0326 22 7 3.6090 -8.2969 1.9951 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7316 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.8010 -6.1834 -0.0093 27 1 1.2625 -7.5058 -1.8743 28 1 2.9456 -8.0577 -2.0510 29 1 3.4630 -10.3767 -1.5434 30 1 2.1409 -11.4440 -1.0123 31 1 3.6237 -10.7782 0.8841 32 1 1.9560 -10.1934 1.1058 33 1 4.2962 -8.9047 2.4152 34 1 3.8811 -7.3291 2.0808 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722029099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:29 Heat of formation + Delta-G solvation = -87.445873 kcal Electronic energy + Delta-G solvation = -17358.689709 eV Core-core repulsion = 14417.458046 eV Total energy + Delta-G solvation = -2941.231663 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23822 -38.58029 -35.82688 -33.79546 -32.43796 -30.84573 -30.31107 -28.21798 -25.49963 -24.03958 -23.58020 -20.62431 -20.26308 -17.89026 -16.84645 -16.59766 -16.42232 -15.97173 -15.43405 -15.30392 -14.81587 -14.67065 -14.32449 -13.75962 -13.39679 -13.18297 -12.97928 -12.56458 -12.42776 -11.95762 -11.69168 -11.17598 -11.07924 -11.03119 -10.77356 -10.72695 -10.08567 -9.81823 -9.43461 -9.08992 -9.05486 -8.86133 -8.24350 -6.51056 -6.22692 -3.93397 2.93075 3.03771 3.20845 3.25781 3.30461 3.55425 3.84167 4.05640 4.19109 4.31310 4.60795 4.70501 4.82962 4.97567 5.10712 5.12596 5.20130 5.27728 5.36637 5.50064 5.60216 5.75807 5.82129 5.85465 6.01076 6.10184 6.48648 6.80049 6.99120 7.11626 7.58391 7.61315 8.34155 8.55943 9.22703 10.84758 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.048578 B = 0.003922 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.252886 B = 7137.314894 C = 7401.170766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.510 6.510 13 N -0.733 5.733 14 C 0.120 3.880 15 H 0.106 0.894 16 C 0.052 3.948 17 O -0.374 6.374 18 C 0.058 3.942 19 C -0.147 4.147 20 C 0.084 3.916 21 H 0.039 0.961 22 N -0.842 5.842 23 H 0.268 0.732 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.395 0.605 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.341 0.659 34 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.171 -18.665 -0.170 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.383 6.383 13 N -0.389 5.389 14 C 0.014 3.986 15 H 0.124 0.876 16 C -0.026 4.026 17 O -0.292 6.292 18 C -0.020 4.020 19 C -0.185 4.185 20 C -0.028 4.028 21 H 0.057 0.943 22 N -0.373 5.373 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.228 0.772 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.154 0.846 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.030 -19.126 -0.132 20.744 hybrid contribution 3.803 1.665 -0.138 4.154 sum 11.834 -17.461 -0.270 21.095 Atomic orbital electron populations 1.70029 1.05950 1.27375 1.46856 1.24994 0.95024 0.99038 0.94520 0.86114 0.79543 0.81886 0.77918 1.19651 1.20561 1.20549 1.22907 0.94925 0.91673 1.58942 0.90903 1.85441 1.04737 0.96280 1.96703 1.23532 1.06676 0.95303 1.04885 1.20350 0.86579 0.86205 0.74901 1.90725 1.15253 1.85418 1.46888 1.45961 1.09676 1.05050 1.78177 1.21612 0.98883 0.81031 0.97085 0.87609 1.23053 1.00990 0.83047 0.95542 1.88012 1.41467 1.15942 1.83747 1.22620 0.92955 0.93738 0.92657 1.22253 1.03033 0.95000 0.98232 1.21605 0.96541 0.95111 0.89518 0.94296 1.58593 1.54407 1.08861 1.15417 0.92209 0.89221 0.89249 0.77175 0.87648 0.93110 0.93252 0.88416 0.90666 0.89608 0.84575 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.15 -3.02 6.16 36.01 0.22 -2.79 16 11 C 0.53 9.71 7.82 -10.98 -0.09 9.63 16 12 O -0.51 -11.50 15.52 5.55 0.09 -11.41 16 13 N -0.73 -9.40 4.47 -53.67 -0.24 -9.64 16 14 C 0.12 1.48 2.30 -67.80 -0.16 1.33 16 15 H 0.11 1.68 7.58 -51.92 -0.39 1.28 16 16 C 0.05 0.64 6.42 37.20 0.24 0.88 16 17 O -0.37 -4.60 10.77 -35.23 -0.38 -4.97 16 18 C 0.06 0.49 6.84 37.21 0.25 0.74 16 19 C -0.15 -1.20 5.72 -26.59 -0.15 -1.35 16 20 C 0.08 0.76 2.88 -67.53 -0.19 0.57 16 21 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 22 N -0.84 -7.49 9.25 -4.51 -0.04 -7.53 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 25 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 26 H 0.39 3.82 8.59 -40.82 -0.35 3.47 16 27 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.34 2.27 9.04 -39.29 -0.36 1.91 16 34 H 0.35 3.10 8.42 -39.29 -0.33 2.77 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -34.23 300.84 -7.00 -41.23 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.78 Total: 4.56 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 0.32 Total: -3.90 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.45 Total: -42.55 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.29 Total: -16.39 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.23 -7.00 -41.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722029099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.219 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds