Wall clock time and date at job start Mon Mar 30 2020 04:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47522 * 300.00351 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00717 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09007 * 109.52089 * 325.13031 * 14 13 11 16 16 C 1.53092 * 109.52100 * 85.31682 * 14 13 11 17 17 O 1.42907 * 109.41688 * 177.51569 * 16 14 13 18 18 C 1.42897 * 114.09576 * 298.84288 * 17 16 14 19 19 C 1.53096 * 109.41476 * 61.15862 * 18 17 16 20 20 C 1.53171 * 109.52718 * 205.00329 * 14 13 11 21 21 H 1.09001 * 109.54677 * 303.07112 * 20 14 13 22 22 N 1.46904 * 109.54522 * 63.24578 * 20 14 13 23 23 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 25 25 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 26 26 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 27 27 H 1.09003 * 109.48241 * 297.50145 * 16 14 13 28 28 H 1.08995 * 109.48217 * 57.53356 * 16 14 13 29 29 H 1.08998 * 109.48629 * 301.17322 * 18 17 16 30 30 H 1.09006 * 109.48088 * 181.13759 * 18 17 16 31 31 H 1.09006 * 109.52001 * 182.48352 * 19 18 17 32 32 H 1.09001 * 109.52184 * 62.29384 * 19 18 17 33 33 H 1.00895 * 111.00400 * 179.97438 * 22 20 14 34 34 H 1.00902 * 110.99990 * 303.96134 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 1 1.4145 -7.7634 0.5748 16 6 2.0382 -8.1458 -1.4537 17 8 1.5922 -9.5035 -1.4621 18 6 2.5488 -10.4349 -0.9527 19 6 2.8616 -10.0961 0.5071 20 6 3.3774 -8.6561 0.5896 21 1 4.3104 -8.5692 0.0326 22 7 3.6090 -8.2969 1.9951 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7316 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.8010 -6.1834 -0.0093 27 1 1.2625 -7.5058 -1.8743 28 1 2.9456 -8.0577 -2.0510 29 1 3.4630 -10.3767 -1.5434 30 1 2.1409 -11.4440 -1.0123 31 1 3.6237 -10.7782 0.8841 32 1 1.9560 -10.1934 1.1058 33 1 4.2962 -8.9047 2.4152 34 1 3.8811 -7.3291 2.0808 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722029099.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:29 Heat of formation + Delta-G solvation = -116.191949 kcal Electronic energy + Delta-G solvation = -17359.936232 eV Core-core repulsion = 14417.458046 eV Total energy + Delta-G solvation = -2942.478186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31822 -39.80636 -36.78304 -34.89910 -34.57905 -31.90741 -31.27728 -29.50181 -27.65448 -24.89724 -24.44185 -21.80725 -21.33423 -19.80861 -17.96591 -17.84069 -17.47216 -16.88400 -16.82575 -16.42190 -16.19217 -16.03718 -15.89479 -14.99400 -14.66236 -14.39360 -14.12226 -13.84582 -13.66561 -13.16060 -13.04453 -12.90871 -12.63440 -12.53704 -11.94385 -11.69510 -11.60746 -11.15765 -11.01846 -10.92701 -10.26432 -10.06937 -9.66803 -8.66694 -8.34533 -6.12755 1.26000 1.41894 1.46643 1.57263 1.57824 2.13543 2.27505 2.93499 2.99912 3.30359 3.32860 3.53248 3.78921 3.89608 4.02083 4.07870 4.17838 4.30453 4.49657 4.50474 4.55433 4.68415 4.73208 4.84238 4.98436 5.19375 5.35478 5.42327 6.14565 6.17006 6.20166 6.42867 6.54960 7.06932 7.20526 8.74955 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.048578 B = 0.003922 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.252886 B = 7137.314894 C = 7401.170766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.127 4.127 11 C 0.536 3.464 12 O -0.562 6.562 13 N -0.703 5.703 14 C 0.121 3.879 15 H 0.065 0.935 16 C 0.057 3.943 17 O -0.399 6.399 18 C 0.051 3.949 19 C -0.142 4.142 20 C 0.092 3.908 21 H 0.068 0.932 22 N -0.854 5.854 23 H 0.271 0.729 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.416 0.584 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.357 0.643 34 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.632 -19.475 -0.206 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.279 4.279 11 C 0.322 3.678 12 O -0.439 6.439 13 N -0.359 5.359 14 C 0.015 3.985 15 H 0.083 0.917 16 C -0.022 4.022 17 O -0.317 6.317 18 C -0.026 4.026 19 C -0.181 4.181 20 C -0.020 4.020 21 H 0.085 0.915 22 N -0.387 5.387 23 H 0.080 0.920 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.253 0.747 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.172 0.828 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.561 -19.985 -0.161 23.089 hybrid contribution 2.760 1.738 -0.116 3.264 sum 14.321 -18.248 -0.276 23.198 Atomic orbital electron populations 1.70197 1.08032 1.28546 1.48091 1.26137 0.95942 1.03361 0.93738 0.84893 0.78646 0.76295 0.78027 1.17899 1.20001 1.20001 1.23244 0.95382 0.91938 1.58752 0.89773 1.85661 1.10603 0.99334 1.97053 1.23358 1.03548 0.93978 1.06986 1.20134 0.86233 0.86694 0.74703 1.90719 1.17556 1.85981 1.49649 1.45601 1.10114 1.04288 1.75857 1.21636 0.98702 0.80974 0.97143 0.91716 1.22879 1.00818 0.83114 0.95355 1.87983 1.43416 1.16095 1.84241 1.22912 0.93289 0.93488 0.92887 1.22239 1.02965 0.94974 0.97895 1.21568 0.96249 0.94396 0.89768 0.91454 1.58544 1.55428 1.09267 1.15496 0.92017 0.86970 0.86963 0.74677 0.90991 0.90542 0.90990 0.86824 0.87618 0.91811 0.82810 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.20 13.22 21.65 0.29 -55.91 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -30.95 9.50 67.95 0.65 -30.31 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 10 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 11 C 0.54 19.51 7.82 87.66 0.69 20.20 16 12 O -0.56 -26.46 15.52 -3.04 -0.05 -26.51 16 13 N -0.70 -16.98 4.47 -442.10 -1.98 -18.96 16 14 C 0.12 2.91 2.30 45.08 0.10 3.01 16 15 H 0.06 2.14 7.58 -2.38 -0.02 2.12 16 16 C 0.06 1.37 6.42 72.01 0.46 1.83 16 17 O -0.40 -9.49 10.77 -148.98 -1.60 -11.10 16 18 C 0.05 0.72 6.84 72.01 0.49 1.21 16 19 C -0.14 -1.94 5.72 30.68 0.18 -1.77 16 20 C 0.09 1.41 2.88 45.03 0.13 1.54 16 21 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 22 N -0.85 -13.11 9.25 -168.19 -1.56 -14.66 16 23 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 24 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 25 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 26 H 0.42 6.70 8.59 -92.71 -0.80 5.90 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.36 3.61 9.04 -89.70 -0.81 2.80 16 34 H 0.35 5.33 8.42 -89.69 -0.76 4.58 16 Total: -1.00 -78.38 300.84 -1.66 -80.05 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -1.23 Total: 18.92 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 3.60 Total: -7.56 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -3.25 Total: -89.53 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.65 Total: -37.60 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -78.38 -1.66 -80.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722029099.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.146 kcal (2) G-P(sol) polarization free energy of solvation -78.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds