Wall clock time and date at job start Mon Mar 30 2020 04:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39415 * 119.66977 * 43.90874 * 3 2 1 5 5 C 1.39706 * 118.88800 * 179.72430 * 4 3 2 6 6 C 1.48046 * 120.88326 * 179.97438 * 5 4 3 7 7 O 1.21427 * 120.00399 * 359.97438 * 6 5 4 8 8 O 1.34678 * 119.99897 * 179.97438 * 6 5 4 9 9 C 1.45193 * 116.99780 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.46683 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46728 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46968 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99901 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00178 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99686 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00059 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47344 * 89.99757 * 16 14 12 18 18 H 1.48499 * 109.46891 * 209.99943 * 16 14 12 19 19 H 1.48504 * 109.46865 * 329.99366 * 16 14 12 20 20 C 1.39911 * 118.23002 * 359.97438 * 5 4 3 21 21 C 1.38398 * 119.21616 * 0.02562 * 20 5 4 22 22 N 1.31543 * 121.05607 * 0.02562 * 21 20 5 23 23 H 1.08001 * 120.55264 * 359.74074 * 4 3 2 24 24 H 1.08994 * 109.47524 * 299.99965 * 9 8 6 25 25 H 1.08999 * 109.47409 * 60.00335 * 9 8 6 26 26 H 1.08994 * 109.47190 * 300.00265 * 10 9 8 27 27 H 1.08996 * 109.47096 * 60.00541 * 10 9 8 28 28 H 1.08994 * 109.47461 * 300.00049 * 11 10 9 29 29 H 1.08999 * 109.47427 * 60.00391 * 11 10 9 30 30 H 0.96996 * 119.99592 * 180.02562 * 15 14 12 31 31 H 1.08001 * 120.39376 * 179.97438 * 20 5 4 32 32 H 1.08002 * 119.47560 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2585 -0.8718 -0.8401 5 6 4.6554 -0.8533 -0.8311 6 6 5.4330 -1.7610 -1.7048 7 8 4.8571 -2.5354 -2.4417 8 8 6.7791 -1.7279 -1.6821 9 6 7.4760 -2.6463 -2.5647 10 6 8.9863 -2.4637 -2.4011 11 6 9.7207 -3.4310 -3.3317 12 6 11.2083 -3.2516 -3.1701 13 1 11.5915 -2.5205 -2.4738 14 6 12.0800 -4.0202 -3.9121 15 7 11.6132 -4.9102 -4.7604 16 14 13.9238 -3.7982 -3.7113 17 1 14.4190 -4.7080 -2.6472 18 1 14.6033 -4.1188 -4.9923 19 1 14.2150 -2.3915 -3.3351 20 6 5.2999 0.0458 0.0255 21 6 4.5390 0.8781 0.8277 22 7 3.2246 0.8353 0.7962 23 1 2.7224 -1.5503 -1.4872 24 1 7.2040 -3.6709 -2.3111 25 1 7.1954 -2.4410 -3.5977 26 1 9.2580 -1.4391 -2.6550 27 1 9.2673 -2.6688 -1.3682 28 1 9.4491 -4.4557 -3.0782 29 1 9.4396 -3.2256 -4.3646 30 1 12.2264 -5.4511 -5.2821 31 1 6.3784 0.0892 0.0609 32 1 5.0321 1.5735 1.4908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795970271.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:44 Heat of formation + Delta-G solvation = -29.111627 kcal Electronic energy + Delta-G solvation = -17311.666537 eV Core-core repulsion = 14237.520486 eV Total energy + Delta-G solvation = -3074.146051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.22769 -39.98785 -36.97747 -36.72909 -34.14904 -33.43583 -32.23071 -31.73394 -27.46638 -25.85443 -24.94015 -23.29718 -21.96164 -20.52367 -19.57879 -17.92143 -17.07408 -16.57450 -16.54624 -16.29808 -15.92525 -15.21270 -14.91359 -14.52339 -14.21213 -13.81260 -13.42330 -13.29126 -13.26850 -12.54409 -12.33404 -12.27076 -11.98870 -11.04662 -11.02945 -10.76314 -10.64640 -10.60065 -10.54553 -10.30878 -9.84202 -9.79191 -9.60755 -9.24063 -8.44850 -6.09596 -4.13066 -0.13543 0.17749 2.01953 2.02524 2.40315 2.59779 3.03637 3.26912 3.33576 3.36350 3.36584 4.01099 4.16193 4.28441 4.32931 4.40437 4.71435 5.01793 5.12782 5.26592 5.41507 5.42951 5.44328 5.80141 5.86408 6.22560 6.41620 6.64797 6.86511 6.87691 7.09860 7.52058 7.55880 7.62339 7.88088 8.28259 8.93136 9.51725 11.01792 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.054021 B = 0.002903 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.192919 B = 9644.287145 C =10136.726659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C 0.268 3.732 3 C 0.185 3.815 4 C -0.062 4.062 5 C -0.068 4.068 6 C 0.503 3.497 7 O -0.494 6.494 8 O -0.348 6.348 9 C 0.069 3.931 10 C -0.109 4.109 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.058 0.942 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.086 4.086 21 C 0.105 3.895 22 N -0.433 5.433 23 H 0.161 0.839 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.262 0.738 31 H 0.166 0.834 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 10.439 10.086 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.059 5.059 2 C -0.049 4.049 3 C 0.047 3.953 4 C -0.084 4.084 5 C -0.078 4.078 6 C 0.346 3.654 7 O -0.382 6.382 8 O -0.264 6.264 9 C -0.004 4.004 10 C -0.147 4.147 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.076 0.924 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.107 4.107 21 C -0.054 4.054 22 N -0.144 5.144 23 H 0.179 0.821 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.183 0.817 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.200 10.594 10.233 21.166 hybrid contribution 1.970 -0.650 -0.616 2.164 sum -13.231 9.944 9.617 19.142 Atomic orbital electron populations 1.81274 1.11365 1.06628 1.06655 1.24791 0.91443 0.94340 0.94355 1.16117 0.86377 0.96109 0.96682 1.22153 0.93106 0.96746 0.96415 1.19515 0.92723 0.97536 0.97976 1.20784 0.82388 0.81426 0.80797 1.90870 1.71551 1.37426 1.38316 1.86516 1.18077 1.59961 1.61850 1.23661 0.93434 0.91218 0.92082 1.21794 0.88342 1.02266 1.02254 1.19058 0.94652 0.93666 0.93967 1.21149 0.90927 1.20742 1.23287 0.92391 1.25034 0.99167 0.95148 0.95117 1.69961 1.34929 1.23069 1.25331 0.86539 0.85103 0.78529 0.77515 1.20587 1.21180 1.19793 1.22941 1.03597 0.92050 0.92111 1.22918 0.87671 0.97533 0.97321 1.67418 1.11190 1.18210 1.17559 0.82121 0.91065 0.91070 0.91967 0.91967 0.96182 0.96170 0.92828 0.81673 0.80273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -4.52 18.54 41.83 0.78 -3.74 16 2 C 0.27 2.66 15.53 -22.47 -0.35 2.32 16 3 C 0.18 1.59 6.58 -85.11 -0.56 1.03 16 4 C -0.06 -0.52 9.36 -38.60 -0.36 -0.88 16 5 C -0.07 -0.63 5.90 -104.70 -0.62 -1.25 16 6 C 0.50 6.42 7.92 34.75 0.28 6.69 16 7 O -0.49 -7.64 16.23 -19.21 -0.31 -7.95 16 8 O -0.35 -4.80 9.57 -40.43 -0.39 -5.18 16 9 C 0.07 1.11 5.47 37.16 0.20 1.31 16 10 C -0.11 -2.04 5.53 -26.73 -0.15 -2.19 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 12 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 16 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C -0.09 -0.57 9.71 -38.90 -0.38 -0.95 16 21 C 0.11 0.61 11.17 -17.62 -0.20 0.41 16 22 N -0.43 -3.59 10.25 -11.21 -0.11 -3.70 16 23 H 0.16 1.26 7.74 -52.49 -0.41 0.85 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.17 0.86 7.70 -52.49 -0.40 0.46 16 32 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 LS Contribution 303.84 15.07 4.58 4.58 Total: -1.00 -31.45 303.84 -5.74 -37.19 By element: Atomic # 1 Polarization: -2.41 SS G_CDS: -3.31 Total: -5.72 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.68 Total: -6.00 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 1.40 Total: -32.78 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.70 Total: -13.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.45 -5.74 -37.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795970271.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.077 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds