Wall clock time and date at job start Mon Mar 30 2020 04:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39415 * 119.66977 * 43.90874 * 3 2 1 5 5 C 1.39706 * 118.88800 * 179.72430 * 4 3 2 6 6 C 1.48046 * 120.88326 * 179.97438 * 5 4 3 7 7 O 1.21427 * 120.00399 * 359.97438 * 6 5 4 8 8 O 1.34678 * 119.99897 * 179.97438 * 6 5 4 9 9 C 1.45193 * 116.99780 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.46683 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.46728 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.46968 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99901 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00178 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99686 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00059 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47344 * 89.99757 * 16 14 12 18 18 H 1.48499 * 109.46891 * 209.99943 * 16 14 12 19 19 H 1.48504 * 109.46865 * 329.99366 * 16 14 12 20 20 C 1.39911 * 118.23002 * 359.97438 * 5 4 3 21 21 C 1.38398 * 119.21616 * 0.02562 * 20 5 4 22 22 N 1.31543 * 121.05607 * 0.02562 * 21 20 5 23 23 H 1.08001 * 120.55264 * 359.74074 * 4 3 2 24 24 H 1.08994 * 109.47524 * 299.99965 * 9 8 6 25 25 H 1.08999 * 109.47409 * 60.00335 * 9 8 6 26 26 H 1.08994 * 109.47190 * 300.00265 * 10 9 8 27 27 H 1.08996 * 109.47096 * 60.00541 * 10 9 8 28 28 H 1.08994 * 109.47461 * 300.00049 * 11 10 9 29 29 H 1.08999 * 109.47427 * 60.00391 * 11 10 9 30 30 H 0.96996 * 119.99592 * 180.02562 * 15 14 12 31 31 H 1.08001 * 120.39376 * 179.97438 * 20 5 4 32 32 H 1.08002 * 119.47560 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2585 -0.8718 -0.8401 5 6 4.6554 -0.8533 -0.8311 6 6 5.4330 -1.7610 -1.7048 7 8 4.8571 -2.5354 -2.4417 8 8 6.7791 -1.7279 -1.6821 9 6 7.4760 -2.6463 -2.5647 10 6 8.9863 -2.4637 -2.4011 11 6 9.7207 -3.4310 -3.3317 12 6 11.2083 -3.2516 -3.1701 13 1 11.5915 -2.5205 -2.4738 14 6 12.0800 -4.0202 -3.9121 15 7 11.6132 -4.9102 -4.7604 16 14 13.9238 -3.7982 -3.7113 17 1 14.4190 -4.7080 -2.6472 18 1 14.6033 -4.1188 -4.9923 19 1 14.2150 -2.3915 -3.3351 20 6 5.2999 0.0458 0.0255 21 6 4.5390 0.8781 0.8277 22 7 3.2246 0.8353 0.7962 23 1 2.7224 -1.5503 -1.4872 24 1 7.2040 -3.6709 -2.3111 25 1 7.1954 -2.4410 -3.5977 26 1 9.2580 -1.4391 -2.6550 27 1 9.2673 -2.6688 -1.3682 28 1 9.4491 -4.4557 -3.0782 29 1 9.4396 -3.2256 -4.3646 30 1 12.2264 -5.4511 -5.2821 31 1 6.3784 0.0892 0.0609 32 1 5.0321 1.5735 1.4908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795970271.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:44 Heat of formation + Delta-G solvation = -47.499573 kcal Electronic energy + Delta-G solvation = -17312.463898 eV Core-core repulsion = 14237.520486 eV Total energy + Delta-G solvation = -3074.943413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03553 -40.91651 -37.94077 -37.76726 -35.92480 -34.26320 -33.53751 -32.83189 -29.13016 -26.78523 -25.81611 -24.76492 -22.88162 -22.13818 -20.54100 -18.87675 -18.45384 -17.74314 -17.72556 -17.23601 -16.77321 -16.46582 -16.00679 -15.54646 -15.54177 -14.76275 -14.47582 -14.15493 -14.12601 -14.05564 -13.79477 -13.77823 -13.10318 -12.81815 -12.49770 -12.38912 -12.08504 -12.06138 -11.49663 -11.41609 -11.26669 -11.23062 -10.93356 -10.54504 -10.37905 -8.19436 -6.30366 -0.81524 -0.46578 1.19644 1.20890 1.43009 1.45240 1.46015 1.56568 1.76705 2.30868 2.43646 2.70653 3.15191 3.27137 3.49678 3.62814 3.68485 4.04604 4.05363 4.10841 4.38559 4.46768 4.54601 4.82518 4.85007 4.91667 5.11822 5.30041 5.32434 5.53647 5.68519 5.84040 6.12655 6.21684 6.48585 6.51668 6.86582 7.39408 8.92678 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.054021 B = 0.002903 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.192919 B = 9644.287145 C =10136.726659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.287 3.713 3 C 0.178 3.822 4 C -0.056 4.056 5 C -0.083 4.083 6 C 0.507 3.493 7 O -0.527 6.527 8 O -0.340 6.340 9 C 0.078 3.922 10 C -0.093 4.093 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.068 0.932 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.260 1.260 20 C -0.065 4.065 21 C 0.120 3.880 22 N -0.444 5.444 23 H 0.160 0.840 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.071 0.929 28 H -0.004 1.004 29 H -0.004 1.004 30 H 0.263 0.737 31 H 0.187 0.813 32 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 12.267 11.834 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.030 4.030 3 C 0.041 3.959 4 C -0.079 4.079 5 C -0.092 4.092 6 C 0.351 3.649 7 O -0.417 6.417 8 O -0.256 6.256 9 C 0.005 3.995 10 C -0.131 4.131 11 C -0.014 4.014 12 C -0.578 4.578 13 H 0.086 0.914 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.184 1.184 20 C -0.086 4.086 21 C -0.040 4.040 22 N -0.156 5.156 23 H 0.178 0.822 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.204 0.796 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -14.034 12.440 11.998 22.263 hybrid contribution 1.599 -1.178 -1.120 2.280 sum -12.435 11.262 10.879 19.995 Atomic orbital electron populations 1.81285 1.12486 1.08038 1.08079 1.24977 0.91655 0.93157 0.93171 1.15948 0.85609 0.96853 0.97469 1.22082 0.92942 0.96600 0.96250 1.19303 0.92541 0.98412 0.98980 1.21335 0.81731 0.81254 0.80531 1.90863 1.71809 1.39051 1.39940 1.86477 1.18878 1.59141 1.61118 1.23247 0.92342 0.91545 0.92360 1.21458 0.89419 1.01009 1.01176 1.18954 0.94581 0.93871 0.93984 1.21646 0.92372 1.20631 1.23113 0.91400 1.26000 1.04390 0.94840 0.94798 1.70100 1.36694 1.24234 1.26500 0.85419 0.78891 0.79131 0.77451 1.19842 1.21171 1.18353 1.23228 1.04664 0.90329 0.90336 1.23576 0.86567 0.97118 0.96748 1.67462 1.12520 1.18107 1.17477 0.82208 0.91549 0.91562 0.91009 0.90985 0.98540 0.98527 0.92792 0.79606 0.76203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.98 18.54 19.00 0.35 -9.63 16 2 C 0.29 5.57 15.53 88.34 1.37 6.94 16 3 C 0.18 2.80 6.58 40.54 0.27 3.07 16 4 C -0.06 -0.89 9.36 22.91 0.21 -0.67 16 5 C -0.08 -1.37 5.90 -19.92 -0.12 -1.49 16 6 C 0.51 12.36 7.92 70.42 0.56 12.92 16 7 O -0.53 -16.30 16.23 20.07 0.33 -15.98 16 8 O -0.34 -8.80 9.57 -55.87 -0.53 -9.34 16 9 C 0.08 2.50 5.47 71.99 0.39 2.90 16 10 C -0.09 -3.40 5.53 30.60 0.17 -3.23 16 11 C 0.02 1.15 4.97 29.85 0.15 1.30 16 12 C -0.54 -29.00 9.11 25.60 0.23 -28.77 16 13 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 14 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 15 N -0.94 -55.45 13.29 21.45 0.28 -55.17 16 16 Si 0.97 42.45 29.54 68.60 2.03 44.47 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 20 C -0.06 -0.62 9.71 22.71 0.22 -0.40 16 21 C 0.12 0.90 11.17 84.77 0.95 1.85 16 22 N -0.44 -6.16 10.25 -189.36 -1.94 -8.10 16 23 H 0.16 2.49 7.74 -2.91 -0.02 2.47 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.19 1.08 7.70 -2.91 -0.02 1.06 16 32 H 0.22 -0.17 8.06 -2.91 -0.02 -0.20 16 Total: -1.00 -68.72 303.84 6.52 -62.20 By element: Atomic # 1 Polarization: -4.32 SS G_CDS: 1.14 Total: -3.18 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 4.87 Total: -5.27 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -1.30 Total: -72.90 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.21 Total: -25.31 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -68.72 6.52 -62.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795970271.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.698 kcal (2) G-P(sol) polarization free energy of solvation -68.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds