Wall clock time and date at job start Mon Mar 30 2020 04:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46400 * 2 1 4 4 C 1.50696 * 109.47120 * 240.00085 * 2 1 3 5 5 H 1.08003 * 119.99951 * 239.99492 * 4 2 1 6 6 C 1.37872 * 120.00426 * 59.99731 * 4 2 1 7 7 N 1.31520 * 119.99966 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00234 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46596 * 60.00194 * 8 6 4 10 10 H 1.48504 * 109.46992 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47158 * 300.00309 * 8 6 4 12 12 C 1.50694 * 109.47077 * 119.99614 * 2 1 3 13 13 O 1.21296 * 120.00108 * 120.00136 * 12 2 1 14 14 N 1.34779 * 120.00417 * 300.00637 * 12 2 1 15 15 C 1.40145 * 120.00513 * 175.52248 * 14 12 2 16 16 C 1.38330 * 120.01085 * 34.67031 * 15 14 12 17 17 C 1.39711 * 119.82661 * 179.73233 * 16 15 14 18 18 C 1.43193 * 120.06902 * 180.24837 * 17 16 15 19 19 N 7.43905 * 126.24217 * 126.81748 * 2 1 3 20 20 C 1.39750 * 119.86126 * 0.53568 * 17 16 15 21 21 C 1.37826 * 120.02820 * 359.73728 * 20 17 16 22 22 C 1.38780 * 120.17177 * 359.97438 * 21 20 17 23 23 O 1.35833 * 119.93229 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47111 * 60.00368 * 1 2 3 25 25 H 1.09000 * 109.47673 * 299.99706 * 1 2 3 26 26 H 1.09007 * 109.47057 * 180.02562 * 1 2 3 27 27 H 0.96998 * 120.00128 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99578 * 355.51265 * 14 12 2 29 29 H 1.07999 * 120.08654 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.98766 * 179.70804 * 20 17 16 31 31 H 1.07999 * 119.91170 * 179.97438 * 21 20 17 32 32 H 0.96699 * 113.99804 * 270.02877 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8269 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0323 -0.7103 1.2305 13 8 2.7297 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.0945 -0.9624 3.5974 16 6 3.3008 -1.6392 3.6145 17 6 3.6862 -2.3437 4.7578 18 6 4.9362 -3.0417 4.7831 19 7 5.9280 -3.5955 4.8031 20 6 2.8464 -2.3707 5.8745 21 6 1.6432 -1.6989 5.8491 22 6 1.2618 -0.9938 4.7162 23 8 0.0747 -0.3340 4.6963 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7087 1.1611 -3.4844 28 1 1.2039 0.5748 2.5446 29 1 3.9448 -1.6199 2.7477 30 1 3.1402 -2.9185 6.7576 31 1 0.9955 -1.7214 6.7130 32 1 -0.6657 -0.8661 4.3744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831272130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:30 Heat of formation + Delta-G solvation = -26.368282 kcal Electronic energy + Delta-G solvation = -18501.779446 eV Core-core repulsion = 15427.752354 eV Total energy + Delta-G solvation = -3074.027091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56487 -38.67197 -37.37420 -35.91538 -34.31114 -33.92023 -30.98030 -30.47585 -29.03447 -25.25259 -23.85544 -23.66649 -22.08906 -19.63558 -19.12243 -18.60536 -16.63470 -16.47712 -15.81207 -15.66010 -15.33758 -14.63949 -14.32598 -13.93608 -13.86159 -13.59312 -13.18398 -13.11371 -12.66013 -12.30062 -12.13708 -12.02395 -11.64641 -11.09742 -10.97939 -10.83539 -10.77607 -10.41661 -10.12459 -10.06774 -9.11331 -8.98506 -8.74145 -8.44350 -8.02126 -6.12662 -4.17013 0.59257 1.21468 2.65183 2.74968 3.31216 3.34324 3.36020 3.40867 3.49179 3.74583 3.87721 4.10395 4.39667 4.75257 4.94376 5.20996 5.28064 5.34047 5.64956 5.85748 6.00001 6.14971 6.18329 6.41183 6.49606 6.67993 6.76967 6.90500 7.31372 7.45660 7.49968 7.61759 7.79077 7.96747 8.20647 8.85146 8.92157 9.49234 10.94752 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.005412 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.030509 B = 5172.741655 C = 6217.509877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.033 3.967 3 H 0.058 0.942 4 C -0.507 4.507 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.519 3.481 13 O -0.523 6.523 14 N -0.682 5.682 15 C 0.141 3.859 16 C -0.066 4.066 17 C -0.023 4.023 18 C 0.263 3.737 19 N -0.423 5.423 20 C -0.082 4.082 21 C -0.128 4.128 22 C 0.099 3.901 23 O -0.492 6.492 24 H 0.096 0.904 25 H 0.014 0.986 26 H 0.032 0.968 27 H 0.263 0.737 28 H 0.415 0.585 29 H 0.156 0.844 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.586 -1.013 15.283 15.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 H 0.075 0.925 4 C -0.545 4.545 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.396 6.396 14 N -0.328 5.328 15 C 0.044 3.956 16 C -0.089 4.089 17 C -0.027 4.027 18 C -0.052 4.052 19 N -0.098 5.098 20 C -0.104 4.104 21 C -0.147 4.147 22 C 0.051 3.949 23 O -0.303 6.303 24 H 0.114 0.886 25 H 0.033 0.967 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.252 0.748 29 H 0.173 0.827 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.325 -1.981 15.177 15.363 hybrid contribution -0.737 -0.143 -0.997 1.248 sum -2.062 -2.124 14.181 14.486 Atomic orbital electron populations 1.21772 0.96126 0.99988 1.01307 1.18912 0.94420 0.96982 0.88522 0.92461 1.21058 1.31538 1.13060 0.88854 0.90733 1.24933 0.94943 0.94999 0.99150 1.69848 1.36715 1.22913 1.23876 0.86486 0.79339 0.79705 0.81516 1.20154 1.21290 1.20132 1.22437 0.78162 0.84288 0.84081 1.90545 1.36350 1.26565 1.86173 1.44120 1.57700 1.26990 1.04022 1.18089 0.93212 0.96855 0.87485 1.21379 0.94736 0.95378 0.97391 1.15888 0.89650 1.01195 0.95947 1.25605 0.92827 0.93309 0.93492 1.81224 1.11218 1.09625 1.07750 1.20897 0.93305 0.99147 0.97042 1.21068 0.97660 0.97619 0.98357 1.18447 0.87364 0.95914 0.93196 1.84757 1.16442 1.41065 1.88016 0.88565 0.96654 0.94881 0.92739 0.74827 0.82663 0.84787 0.84250 0.74917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.87 37.16 0.33 -2.49 16 2 C 0.03 0.75 2.64 -92.93 -0.24 0.51 16 3 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.51 -13.63 8.37 -34.44 -0.29 -13.92 16 5 H 0.07 2.12 6.75 -52.48 -0.35 1.76 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.07 11.32 55.43 0.63 -23.44 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.52 10.70 6.99 -10.99 -0.08 10.62 16 13 O -0.52 -12.24 12.88 5.54 0.07 -12.17 16 14 N -0.68 -10.79 5.04 -9.79 -0.05 -10.84 16 15 C 0.14 2.01 6.32 -83.55 -0.53 1.48 16 16 C -0.07 -0.99 8.40 -39.00 -0.33 -1.31 16 17 C -0.02 -0.29 5.74 -106.86 -0.61 -0.90 16 18 C 0.26 3.73 15.32 -22.47 -0.34 3.38 16 19 N -0.42 -6.79 18.54 41.84 0.78 -6.02 16 20 C -0.08 -0.79 9.74 -39.17 -0.38 -1.18 16 21 C -0.13 -1.18 9.96 -39.53 -0.39 -1.57 16 22 C 0.10 1.12 6.73 -38.91 -0.26 0.86 16 23 O -0.49 -4.83 13.04 -19.22 -0.25 -5.08 16 24 H 0.10 2.28 6.07 -51.93 -0.32 1.96 16 25 H 0.01 0.25 7.67 -51.93 -0.40 -0.15 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.41 5.70 8.12 -40.82 -0.33 5.37 16 29 H 0.16 2.73 6.19 -52.49 -0.32 2.41 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.39 2.42 9.06 45.56 0.41 2.84 16 LS Contribution 290.64 15.07 4.38 4.38 Total: -1.00 -30.68 290.64 -4.83 -35.51 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -2.14 Total: 4.48 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.22 Total: -2.98 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.35 Total: -40.30 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.18 Total: -17.25 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.68 -4.83 -35.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831272130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.140 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds