Wall clock time and date at job start Mon Mar 30 2020 04:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46400 * 2 1 4 4 C 1.50696 * 109.47120 * 240.00085 * 2 1 3 5 5 H 1.08003 * 119.99951 * 239.99492 * 4 2 1 6 6 C 1.37872 * 120.00426 * 59.99731 * 4 2 1 7 7 N 1.31520 * 119.99966 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00234 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46596 * 60.00194 * 8 6 4 10 10 H 1.48504 * 109.46992 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47158 * 300.00309 * 8 6 4 12 12 C 1.50694 * 109.47077 * 119.99614 * 2 1 3 13 13 O 1.21296 * 120.00108 * 120.00136 * 12 2 1 14 14 N 1.34779 * 120.00417 * 300.00637 * 12 2 1 15 15 C 1.40145 * 120.00513 * 175.52248 * 14 12 2 16 16 C 1.38330 * 120.01085 * 34.67031 * 15 14 12 17 17 C 1.39711 * 119.82661 * 179.73233 * 16 15 14 18 18 C 1.43193 * 120.06902 * 180.24837 * 17 16 15 19 19 N 7.43905 * 126.24217 * 126.81748 * 2 1 3 20 20 C 1.39750 * 119.86126 * 0.53568 * 17 16 15 21 21 C 1.37826 * 120.02820 * 359.73728 * 20 17 16 22 22 C 1.38780 * 120.17177 * 359.97438 * 21 20 17 23 23 O 1.35833 * 119.93229 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47111 * 60.00368 * 1 2 3 25 25 H 1.09000 * 109.47673 * 299.99706 * 1 2 3 26 26 H 1.09007 * 109.47057 * 180.02562 * 1 2 3 27 27 H 0.96998 * 120.00128 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99578 * 355.51265 * 14 12 2 29 29 H 1.07999 * 120.08654 * 359.97438 * 16 15 14 30 30 H 1.07994 * 119.98766 * 179.70804 * 20 17 16 31 31 H 1.07999 * 119.91170 * 179.97438 * 21 20 17 32 32 H 0.96699 * 113.99804 * 270.02877 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8269 -0.4200 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0323 -0.7103 1.2305 13 8 2.7297 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4546 15 6 2.0945 -0.9624 3.5974 16 6 3.3008 -1.6392 3.6145 17 6 3.6862 -2.3437 4.7578 18 6 4.9362 -3.0417 4.7831 19 7 5.9280 -3.5955 4.8031 20 6 2.8464 -2.3707 5.8745 21 6 1.6432 -1.6989 5.8491 22 6 1.2618 -0.9938 4.7162 23 8 0.0747 -0.3340 4.6963 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7087 1.1611 -3.4844 28 1 1.2039 0.5748 2.5446 29 1 3.9448 -1.6199 2.7477 30 1 3.1402 -2.9185 6.7576 31 1 0.9955 -1.7214 6.7130 32 1 -0.6657 -0.8661 4.3744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831272130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:29 Heat of formation + Delta-G solvation = -48.233849 kcal Electronic energy + Delta-G solvation = -18502.727608 eV Core-core repulsion = 15427.752354 eV Total energy + Delta-G solvation = -3074.975253 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.72980 -39.99949 -38.34540 -36.97799 -35.83008 -35.63127 -32.70642 -31.48519 -30.23175 -27.20380 -25.21918 -24.70989 -23.40197 -21.12036 -20.28006 -19.45501 -18.36012 -17.91594 -17.11942 -16.87107 -16.54213 -16.20957 -15.89794 -15.04969 -15.00177 -14.76210 -14.62837 -14.41629 -14.17500 -13.57484 -13.31431 -13.11437 -13.05358 -12.92920 -12.71692 -12.55420 -12.22932 -12.02967 -11.83891 -11.33498 -11.05027 -10.61302 -10.33587 -9.80778 -9.13056 -8.16335 -6.26491 -0.35821 0.25086 1.41724 1.41868 1.50370 1.52932 1.63892 1.94137 2.17956 2.45840 2.75313 2.82878 3.14052 3.23704 3.88871 4.08674 4.17095 4.37071 4.50507 4.75645 4.83772 4.94615 4.95466 5.05079 5.21482 5.26739 5.45432 5.49139 5.72555 5.78943 5.93719 6.19508 6.36912 6.58539 6.80493 6.81851 7.31703 7.43984 8.89044 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.005412 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.030509 B = 5172.741655 C = 6217.509877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.523 3.477 13 O -0.561 6.561 14 N -0.664 5.664 15 C 0.106 3.894 16 C -0.083 4.083 17 C -0.035 4.035 18 C 0.280 3.720 19 N -0.464 5.464 20 C -0.054 4.054 21 C -0.113 4.113 22 C 0.122 3.878 23 O -0.494 6.494 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.025 0.975 27 H 0.265 0.735 28 H 0.425 0.575 29 H 0.118 0.882 30 H 0.171 0.829 31 H 0.182 0.818 32 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 -0.999 17.862 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.005 3.995 3 H 0.064 0.936 4 C -0.569 4.569 5 H 0.068 0.932 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.205 1.205 12 C 0.314 3.686 13 O -0.438 6.438 14 N -0.311 5.311 15 C 0.011 3.989 16 C -0.106 4.106 17 C -0.039 4.039 18 C -0.034 4.034 19 N -0.140 5.140 20 C -0.075 4.075 21 C -0.132 4.132 22 C 0.074 3.926 23 O -0.307 6.307 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.264 0.736 29 H 0.135 0.865 30 H 0.188 0.812 31 H 0.200 0.800 32 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -3.081 -1.946 17.796 18.165 hybrid contribution -0.261 -0.114 -1.667 1.691 sum -3.342 -2.060 16.129 16.600 Atomic orbital electron populations 1.21570 0.94447 0.99706 1.02078 1.18824 0.95769 0.96027 0.88838 0.93627 1.21235 1.31801 1.12848 0.91037 0.93249 1.25520 0.95167 0.95692 1.01234 1.69926 1.36961 1.23389 1.24412 0.85717 0.78544 0.78813 0.79179 1.20205 1.19967 1.20503 1.21824 0.77957 0.83685 0.85108 1.90537 1.38052 1.28228 1.86960 1.43592 1.57011 1.27236 1.03228 1.18249 0.94161 0.98542 0.87956 1.21101 0.95181 0.97114 0.97254 1.15912 0.89740 1.01733 0.96551 1.25877 0.92761 0.92445 0.92316 1.81230 1.12409 1.11260 1.09094 1.21328 0.92146 0.97456 0.96531 1.21485 0.97543 0.95638 0.98513 1.18513 0.87312 0.94532 0.92286 1.84716 1.16410 1.41597 1.87993 0.91091 0.92429 0.95547 0.92545 0.73591 0.86451 0.81165 0.80044 0.72550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.87 71.98 0.64 -4.39 16 2 C 0.03 1.25 2.64 -12.29 -0.03 1.22 16 3 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.53 -29.57 8.37 25.60 0.21 -29.35 16 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -49.36 11.32 21.45 0.24 -49.11 16 8 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 9 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 C 0.52 22.17 6.99 87.65 0.61 22.78 16 13 O -0.56 -27.63 12.88 -3.08 -0.04 -27.67 16 14 N -0.66 -20.67 5.04 -303.25 -1.53 -22.20 16 15 C 0.11 2.91 6.32 38.14 0.24 3.15 16 16 C -0.08 -2.52 8.40 22.65 0.19 -2.33 16 17 C -0.04 -0.84 5.74 -21.31 -0.12 -0.96 16 18 C 0.28 7.87 15.32 88.33 1.35 9.22 16 19 N -0.46 -15.04 18.54 19.00 0.35 -14.68 16 20 C -0.05 -0.80 9.74 22.54 0.22 -0.58 16 21 C -0.11 -1.47 9.96 22.30 0.22 -1.25 16 22 C 0.12 2.30 6.73 22.70 0.15 2.45 16 23 O -0.49 -7.48 13.04 -91.67 -1.20 -8.68 16 24 H 0.07 3.36 6.07 -2.39 -0.01 3.35 16 25 H 0.06 1.86 7.67 -2.39 -0.02 1.85 16 26 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.43 11.06 8.12 -92.71 -0.75 10.31 16 29 H 0.12 4.46 6.19 -2.91 -0.02 4.44 16 30 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 31 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 32 H 0.41 3.17 9.06 -74.06 -0.67 2.50 16 Total: -1.00 -70.01 290.64 3.77 -66.24 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -0.23 Total: 8.29 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 4.14 Total: 1.69 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -0.93 Total: -86.00 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.24 Total: -36.34 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.01 3.77 -66.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831272130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.011 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds