Wall clock time and date at job start Mon Mar 30 2020 04:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46615 * 2 1 4 4 C 1.50698 * 109.47346 * 119.99680 * 2 1 3 5 5 H 1.07997 * 119.99957 * 120.00081 * 4 2 1 6 6 C 1.37874 * 120.00128 * 300.00314 * 4 2 1 7 7 N 1.31518 * 120.00147 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00172 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47174 * 90.00093 * 8 6 4 10 10 H 1.48496 * 109.47456 * 209.99967 * 8 6 4 11 11 H 1.48500 * 109.47100 * 330.00474 * 8 6 4 12 12 C 1.50697 * 109.47118 * 240.00386 * 2 1 3 13 13 O 1.21297 * 119.99666 * 239.99447 * 12 2 1 14 14 N 1.34770 * 120.00207 * 59.99302 * 12 2 1 15 15 C 1.40143 * 120.00011 * 175.53358 * 14 12 2 16 16 C 1.38337 * 120.01288 * 34.68131 * 15 14 12 17 17 C 1.39715 * 119.82720 * 179.79404 * 16 15 14 18 18 C 1.43197 * 120.06463 * 180.23168 * 17 16 15 19 19 N 7.43872 * 104.99715 * 221.93668 * 2 1 3 20 20 C 1.39744 * 119.86382 * 0.50585 * 17 16 15 21 21 C 1.37825 * 120.02856 * 359.72403 * 20 17 16 22 22 C 1.38790 * 120.17266 * 0.02706 * 21 20 17 23 23 O 1.35822 * 119.93093 * 179.97438 * 22 21 20 24 24 H 1.09005 * 109.46812 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47520 * 60.00055 * 1 2 3 26 26 H 1.09005 * 109.47171 * 299.99554 * 1 2 3 27 27 H 0.97003 * 119.99925 * 179.97438 * 7 6 4 28 28 H 0.96998 * 120.00294 * 355.54036 * 14 12 2 29 29 H 1.07994 * 120.08551 * 0.02562 * 16 15 14 30 30 H 1.07998 * 119.98765 * 179.70295 * 20 17 16 31 31 H 1.08003 * 119.91400 * 180.02562 * 21 20 17 32 32 H 0.96695 * 114.00249 * 270.01535 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.6298 -0.5457 4.4124 10 1 1.3433 -0.9491 5.1121 11 1 2.4861 -2.5660 3.7120 12 6 2.0323 -0.7103 -1.2305 13 8 2.7298 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4545 15 6 2.2491 -0.8532 -3.5973 16 6 2.4849 -2.2162 -3.6143 17 6 3.0217 -2.8143 -4.7572 18 6 3.2633 -4.2255 -4.7822 19 7 3.4549 -5.3451 -4.8020 20 6 3.3278 -2.0316 -5.8737 21 6 3.0950 -0.6734 -5.8487 22 6 2.5569 -0.0787 -4.7160 23 8 2.3299 1.2603 -4.6965 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 0.5138 0.8901 27 1 0.7089 1.1615 3.4844 28 1 1.0969 0.4991 -2.5446 29 1 2.2511 -2.8170 -2.7479 30 1 3.7473 -2.4911 -6.7564 31 1 3.3318 -0.0703 -6.7128 32 1 3.0781 1.7814 -4.3745 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831272131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:32 Heat of formation + Delta-G solvation = -26.433059 kcal Electronic energy + Delta-G solvation = -18484.911605 eV Core-core repulsion = 15410.881705 eV Total energy + Delta-G solvation = -3074.029900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56666 -38.67626 -37.37819 -35.91742 -34.31210 -33.92218 -30.97907 -30.48101 -29.03335 -25.25636 -23.83057 -23.67504 -22.12303 -19.60514 -19.12408 -18.59929 -16.63932 -16.43695 -15.86152 -15.73025 -15.37716 -14.60775 -14.23507 -13.93854 -13.84024 -13.60537 -13.21409 -13.08984 -12.72951 -12.31939 -12.07277 -12.02974 -11.63589 -11.10247 -10.99691 -10.81152 -10.79104 -10.43725 -10.10981 -10.06461 -9.10733 -8.97827 -8.74673 -8.44782 -8.02109 -6.12934 -4.17192 0.59148 1.21346 2.65261 2.74857 3.28661 3.34966 3.38312 3.41169 3.48933 3.74440 3.87635 4.09895 4.39607 4.75149 4.94300 5.20632 5.28053 5.33911 5.64812 5.85637 5.99971 6.15135 6.18429 6.40886 6.50145 6.68272 6.77168 6.90160 7.31888 7.45561 7.49840 7.62426 7.79003 7.96516 8.20562 8.85115 8.92383 9.49141 10.94488 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.023770 B = 0.005337 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.684086 B = 5245.448772 C = 6145.917096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.033 3.967 3 H 0.058 0.942 4 C -0.506 4.506 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.519 3.481 13 O -0.522 6.522 14 N -0.682 5.682 15 C 0.140 3.860 16 C -0.066 4.066 17 C -0.023 4.023 18 C 0.263 3.737 19 N -0.423 5.423 20 C -0.082 4.082 21 C -0.128 4.128 22 C 0.099 3.901 23 O -0.492 6.492 24 H 0.033 0.967 25 H 0.014 0.986 26 H 0.096 0.904 27 H 0.262 0.738 28 H 0.415 0.585 29 H 0.156 0.844 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 2.686 -15.288 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 H 0.075 0.925 4 C -0.544 4.544 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.396 6.396 14 N -0.329 5.329 15 C 0.043 3.957 16 C -0.089 4.089 17 C -0.027 4.027 18 C -0.052 4.052 19 N -0.098 5.098 20 C -0.104 4.104 21 C -0.147 4.147 22 C 0.050 3.950 23 O -0.303 6.303 24 H 0.053 0.947 25 H 0.033 0.967 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.252 0.748 29 H 0.173 0.827 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.850 0.226 -15.185 15.299 hybrid contribution 0.369 0.663 1.002 1.257 sum 2.219 0.890 -14.183 14.383 Atomic orbital electron populations 1.21789 0.96160 1.00137 1.01301 1.18916 0.94377 0.96966 0.88537 0.92460 1.21101 1.31441 1.13055 0.88842 0.90669 1.24936 0.94938 0.95015 0.99166 1.69860 1.36759 1.22958 1.23769 0.86432 0.78488 0.80262 0.81941 1.20598 1.21214 1.19713 1.22437 0.78112 0.84342 0.84087 1.90547 1.37062 1.25831 1.86175 1.44126 1.48085 1.36627 1.04026 1.18093 0.98531 0.91536 0.87495 1.21382 0.96798 0.93288 0.97391 1.15891 1.05757 0.85071 0.95953 1.25602 0.93536 0.92604 0.93494 1.81219 1.08924 1.11917 1.07748 1.20896 0.99456 0.93000 0.97041 1.21069 1.00454 0.94823 0.98346 1.18446 0.99481 0.83826 0.93205 1.84756 1.43397 1.14129 1.88015 0.94740 0.96709 0.88507 0.92799 0.74802 0.82672 0.84781 0.84243 0.74919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.86 37.16 0.33 -2.58 16 2 C 0.03 0.76 2.65 -92.93 -0.25 0.52 16 3 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.51 -13.61 8.37 -34.44 -0.29 -13.89 16 5 H 0.08 2.14 6.75 -52.49 -0.35 1.78 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.07 11.32 55.43 0.63 -23.44 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 12 C 0.52 10.71 6.99 -10.99 -0.08 10.63 16 13 O -0.52 -12.25 12.88 5.54 0.07 -12.18 16 14 N -0.68 -10.82 5.11 -9.78 -0.05 -10.87 16 15 C 0.14 2.01 6.32 -83.55 -0.53 1.48 16 16 C -0.07 -0.99 8.40 -38.99 -0.33 -1.31 16 17 C -0.02 -0.29 5.74 -106.86 -0.61 -0.90 16 18 C 0.26 3.73 15.32 -22.47 -0.34 3.39 16 19 N -0.42 -6.80 18.54 41.84 0.78 -6.02 16 20 C -0.08 -0.79 9.74 -39.17 -0.38 -1.18 16 21 C -0.13 -1.17 9.96 -39.53 -0.39 -1.57 16 22 C 0.10 1.11 6.73 -38.90 -0.26 0.85 16 23 O -0.49 -4.80 13.04 -19.18 -0.25 -5.06 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.01 0.25 7.47 -51.93 -0.39 -0.14 16 26 H 0.10 2.31 6.07 -51.93 -0.32 2.00 16 27 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.41 5.74 7.86 -40.82 -0.32 5.42 16 29 H 0.16 2.75 6.19 -52.49 -0.32 2.42 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 32 H 0.39 2.36 9.06 45.56 0.41 2.78 16 LS Contribution 290.25 15.07 4.37 4.37 Total: -1.00 -30.74 290.25 -4.82 -35.56 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -2.12 Total: 4.53 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.23 Total: -3.03 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 1.35 Total: -40.33 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.18 Total: -17.23 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.74 -4.82 -35.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831272131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.122 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds