Wall clock time and date at job start Mon Mar 30 2020 04:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47116 * 2 1 4 4 C 1.50696 * 109.47143 * 239.99377 * 2 1 3 5 5 H 1.07993 * 120.00357 * 239.99706 * 4 2 1 6 6 C 1.37879 * 119.99971 * 60.00392 * 4 2 1 7 7 N 1.31518 * 119.99916 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00190 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47447 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47193 * 300.00154 * 8 6 4 11 11 H 1.48498 * 109.46983 * 59.99817 * 8 6 4 12 12 C 1.50706 * 109.46905 * 119.99686 * 2 1 3 13 13 O 1.21293 * 119.99950 * 120.00155 * 12 2 1 14 14 N 1.34773 * 119.99837 * 299.99911 * 12 2 1 15 15 C 1.40238 * 120.00181 * 175.34535 * 14 12 2 16 16 C 1.41006 * 119.88664 * 35.03928 * 15 14 12 17 17 C 1.35922 * 119.71286 * 179.97438 * 16 15 14 18 18 C 1.40833 * 119.34007 * 0.02562 * 17 16 15 19 19 N 1.32387 * 133.35859 * 180.02562 * 18 17 16 20 20 N 1.28673 * 109.47030 * 179.97438 * 19 18 17 21 21 C 1.30840 * 110.26775 * 359.97438 * 20 19 18 22 22 N 1.36037 * 107.51561 * 0.02562 * 21 20 19 23 23 C 1.35532 * 119.89377 * 214.77632 * 15 14 12 24 24 H 1.09001 * 109.46808 * 60.00401 * 1 2 3 25 25 H 1.09002 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47161 * 300.00754 * 1 2 3 27 27 H 0.96994 * 119.99825 * 180.02562 * 7 6 4 28 28 H 0.97003 * 120.00571 * 355.35130 * 14 12 2 29 29 H 1.07998 * 120.14725 * 0.03031 * 16 15 14 30 30 H 1.08008 * 120.33244 * 180.02562 * 17 16 15 31 31 H 1.08005 * 126.24154 * 179.97438 * 21 20 19 32 32 H 1.08005 * 119.79332 * 359.97033 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.8281 -0.4196 -5.2204 10 1 3.8076 -1.1193 -4.0076 11 1 1.8281 -2.5200 -4.0079 12 6 2.0323 -0.7104 1.2306 13 8 2.7297 -1.6966 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.0915 -0.9647 3.5981 16 6 3.3232 -1.6509 3.6163 17 6 3.6929 -2.3422 4.7266 18 6 2.8362 -2.3622 5.8442 19 7 2.9129 -2.9287 7.0383 20 7 1.8566 -2.6453 7.7161 21 6 1.0530 -1.8923 7.0095 22 7 1.6425 -1.6861 5.8009 23 6 1.2808 -0.9895 4.6839 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7083 1.1606 -3.4844 28 1 1.2061 0.5761 2.5448 29 1 3.9706 -1.6264 2.7521 30 1 4.6344 -2.8710 4.7516 31 1 0.0960 -1.5058 7.3274 32 1 0.3410 -0.4575 4.6641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831592085.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:13 Heat of formation + Delta-G solvation = 57.359391 kcal Electronic energy + Delta-G solvation = -18572.186704 eV Core-core repulsion = 15534.083068 eV Total energy + Delta-G solvation = -3038.103636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.52516 -41.34690 -38.97744 -35.85607 -35.77478 -34.86147 -32.68872 -31.03685 -30.08908 -27.19293 -25.53307 -25.04526 -23.76218 -23.45046 -21.46209 -19.42172 -18.98000 -18.18657 -18.02499 -17.54468 -17.04222 -16.56224 -16.11370 -15.93466 -15.69375 -15.10174 -14.52256 -14.34727 -13.84706 -13.47228 -13.20788 -12.97619 -12.74515 -12.72405 -12.55716 -12.38097 -12.20450 -12.02146 -11.67983 -11.52977 -11.04749 -10.66429 -10.39030 -9.93006 -8.98492 -8.15607 -6.25246 -0.43397 0.03308 1.19217 1.43803 1.44723 1.52585 1.58349 1.82413 2.14108 2.34374 2.46681 3.08598 3.15739 3.46977 3.60173 3.85188 3.92771 3.95085 4.37916 4.66357 4.76317 4.83554 4.91450 4.94003 4.95531 5.05085 5.12825 5.46066 5.50067 5.75557 5.88609 5.94305 6.19930 6.52477 6.83093 7.26349 7.44462 7.45433 8.89600 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.048996 B = 0.004281 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.334742 B = 6538.712118 C = 6945.494665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.028 3.972 3 H 0.053 0.947 4 C -0.531 4.531 5 H 0.052 0.948 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.529 3.471 13 O -0.554 6.554 14 N -0.658 5.658 15 C 0.136 3.864 16 C -0.082 4.082 17 C -0.079 4.079 18 C 0.174 3.826 19 N -0.333 5.333 20 N -0.298 5.298 21 C 0.136 3.864 22 N -0.380 5.380 23 C 0.032 3.968 24 H 0.070 0.930 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.265 0.735 28 H 0.430 0.570 29 H 0.148 0.852 30 H 0.173 0.827 31 H 0.276 0.724 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 2.183 13.027 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.007 3.993 3 H 0.071 0.929 4 C -0.569 4.569 5 H 0.070 0.930 6 C -0.175 4.175 7 N -0.547 5.547 8 Si 0.776 3.224 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.204 1.204 12 C 0.320 3.680 13 O -0.430 6.430 14 N -0.307 5.307 15 C 0.038 3.962 16 C -0.108 4.108 17 C -0.101 4.101 18 C -0.077 4.077 19 N -0.179 5.179 20 N -0.137 5.137 21 C -0.147 4.147 22 N -0.059 5.059 23 C -0.094 4.094 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.270 0.730 29 H 0.166 0.834 30 H 0.190 0.810 31 H 0.291 0.709 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.294 0.764 14.069 14.276 hybrid contribution -0.245 0.593 -2.072 2.169 sum -2.538 1.357 11.997 12.338 Atomic orbital electron populations 1.21610 0.94610 0.99683 1.02289 1.18836 0.95571 0.96358 0.88505 0.92889 1.21258 1.31801 1.12897 0.90959 0.92975 1.25493 0.95179 0.95656 1.01215 1.69914 1.36984 1.23423 1.24395 0.85741 0.78724 0.78733 0.79229 1.20323 1.20201 1.20373 1.21840 0.77759 0.83662 0.84713 1.90546 1.37766 1.27940 1.86783 1.43539 1.57584 1.26987 1.02545 1.17256 0.93354 0.97617 0.87981 1.21486 0.95627 0.95489 0.98184 1.20282 1.00248 1.01235 0.88303 1.22588 0.89101 0.98429 0.97537 1.74881 1.17520 1.23944 1.01597 1.74093 0.99828 1.13533 1.26198 1.27394 1.03680 1.03161 0.80445 1.43696 1.16018 1.33296 1.12888 1.21443 1.01690 1.01555 0.84667 0.91121 0.95799 0.92049 0.92601 0.72966 0.83430 0.80988 0.70859 0.76450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 8.87 71.98 0.64 -4.18 16 2 C 0.03 1.23 2.64 -12.28 -0.03 1.20 16 3 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.53 -27.90 8.37 25.60 0.21 -27.69 16 5 H 0.05 2.93 6.75 -2.91 -0.02 2.91 16 6 C 0.02 1.26 5.30 84.65 0.45 1.71 16 7 N -0.91 -47.40 11.32 21.45 0.24 -47.16 16 8 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 9 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 C 0.53 20.05 7.00 87.66 0.61 20.67 16 13 O -0.55 -24.87 12.89 -3.07 -0.04 -24.91 16 14 N -0.66 -16.97 5.19 -304.04 -1.58 -18.55 16 15 C 0.14 3.33 6.25 37.85 0.24 3.57 16 16 C -0.08 -2.28 8.69 22.41 0.19 -2.08 16 17 C -0.08 -2.06 10.10 22.37 0.23 -1.83 16 18 C 0.17 4.91 7.91 134.07 1.06 5.97 16 19 N -0.33 -10.72 12.31 -55.39 -0.68 -11.40 16 20 N -0.30 -8.52 12.19 -59.48 -0.73 -9.24 16 21 C 0.14 2.65 12.97 179.84 2.33 4.98 16 22 N -0.38 -8.39 2.95 -355.77 -1.05 -9.44 16 23 C 0.03 0.58 10.89 83.34 0.91 1.49 16 24 H 0.07 3.17 6.07 -2.39 -0.01 3.15 16 25 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.75 7.68 -2.39 -0.02 1.73 16 27 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 28 H 0.43 7.83 8.38 -92.71 -0.78 7.06 16 29 H 0.15 4.67 6.26 -2.91 -0.02 4.66 16 30 H 0.17 3.80 8.06 -2.91 -0.02 3.77 16 31 H 0.28 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.22 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -69.73 280.61 5.43 -64.30 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.39 Total: 8.24 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 6.84 Total: 3.80 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -3.79 Total: -95.79 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.91 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -69.73 5.43 -64.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831592085.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.662 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds