Wall clock time and date at job start Mon Mar 30 2020 04:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46961 * 2 1 4 4 C 1.50691 * 109.47298 * 120.00512 * 2 1 3 5 5 H 1.08004 * 120.00542 * 119.99656 * 4 2 1 6 6 C 1.37881 * 120.00389 * 300.00073 * 4 2 1 7 7 N 1.31518 * 119.99198 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00434 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46889 * 90.00108 * 8 6 4 10 10 H 1.48503 * 109.46910 * 209.99814 * 8 6 4 11 11 H 1.48496 * 109.46699 * 329.99819 * 8 6 4 12 12 C 1.50698 * 109.47063 * 240.00657 * 2 1 3 13 13 O 1.21293 * 120.00242 * 239.99864 * 12 2 1 14 14 N 1.34776 * 120.00178 * 59.99479 * 12 2 1 15 15 C 1.40234 * 120.00045 * 185.27637 * 14 12 2 16 16 C 1.41010 * 119.89314 * 33.23577 * 15 14 12 17 17 C 1.35930 * 119.71409 * 180.29299 * 16 15 14 18 18 C 1.40831 * 119.33686 * 359.73902 * 17 16 15 19 19 N 1.32383 * 133.35466 * 180.02562 * 18 17 16 20 20 N 1.28669 * 109.47071 * 179.97438 * 19 18 17 21 21 C 1.30840 * 110.27409 * 0.02562 * 20 19 18 22 22 N 1.36037 * 107.50609 * 359.97438 * 21 20 19 23 23 C 1.35539 * 119.89140 * 212.99359 * 15 14 12 24 24 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47101 * 299.99432 * 1 2 3 26 26 H 1.09003 * 109.47603 * 59.99779 * 1 2 3 27 27 H 0.96997 * 119.99358 * 180.02562 * 7 6 4 28 28 H 0.96999 * 120.00159 * 5.27925 * 14 12 2 29 29 H 1.07995 * 120.14328 * 0.02562 * 16 15 14 30 30 H 1.07997 * 120.32766 * 179.71489 * 17 16 15 31 31 H 1.07995 * 126.24906 * 179.97438 * 21 20 19 32 32 H 1.08009 * 119.79109 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3226 -1.1199 4.0078 9 1 3.6306 -0.5443 4.4117 10 1 1.3446 -0.9494 5.1122 11 1 2.4881 -2.5656 3.7119 12 6 2.0323 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1194 14 7 1.7067 -0.2498 -2.4546 15 6 2.0802 -0.9714 -3.5975 16 6 2.1330 -2.3798 -3.5533 17 6 2.5013 -3.0754 -4.6615 18 6 2.8199 -2.3754 -5.8413 19 7 3.2020 -2.7576 -7.0498 20 7 3.3722 -1.7215 -7.7935 21 6 3.1144 -0.6311 -7.1178 22 7 2.7559 -1.0044 -5.8597 23 6 2.3847 -0.3130 -4.7425 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1615 3.4844 28 1 1.2139 0.5808 -2.5450 29 1 1.8860 -2.9034 -2.6416 30 1 2.5495 -4.1540 -4.6374 31 1 3.1752 0.3806 -7.4907 32 1 2.3378 0.7657 -4.7699 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831592086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:16 Heat of formation + Delta-G solvation = 75.150803 kcal Electronic energy + Delta-G solvation = -18565.288251 eV Core-core repulsion = 15527.956109 eV Total energy + Delta-G solvation = -3037.332142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.49255 -40.03423 -37.77034 -34.55161 -34.07984 -33.75356 -31.01387 -29.86608 -28.99015 -25.34060 -24.33855 -23.92399 -22.49632 -22.32030 -20.06451 -18.22356 -17.76943 -16.92562 -16.54452 -16.33474 -15.71529 -15.15713 -14.92625 -14.64954 -14.40205 -13.45309 -13.27284 -12.90782 -12.55651 -12.17866 -11.79832 -11.68298 -11.33398 -11.17871 -10.93295 -10.86843 -10.63728 -10.53928 -10.33313 -10.13809 -9.20409 -9.06486 -8.76162 -8.53561 -7.96363 -6.20817 -4.25551 0.55748 1.08125 2.20266 2.64717 3.10012 3.23966 3.29547 3.31238 3.39621 3.48824 4.06718 4.32549 4.42025 4.52076 4.71126 4.84527 5.04084 5.13507 5.58162 5.72515 5.88939 5.93136 5.97526 6.18183 6.38796 6.54469 6.57712 6.67019 6.88081 7.20332 7.47737 7.64976 7.86685 8.08548 8.49609 8.67874 8.83611 9.41326 10.86677 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.050086 B = 0.004228 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.903839 B = 6620.580354 C = 6932.685204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.034 3.966 3 H 0.058 0.942 4 C -0.509 4.509 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.522 3.478 13 O -0.516 6.516 14 N -0.681 5.681 15 C 0.170 3.830 16 C -0.076 4.076 17 C -0.072 4.072 18 C 0.185 3.815 19 N -0.295 5.295 20 N -0.260 5.260 21 C 0.108 3.892 22 N -0.371 5.371 23 C -0.010 4.010 24 H 0.034 0.966 25 H 0.097 0.903 26 H 0.014 0.986 27 H 0.263 0.737 28 H 0.413 0.587 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.223 0.777 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.214 1.378 -11.817 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.013 3.987 3 H 0.076 0.924 4 C -0.547 4.547 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.314 3.686 13 O -0.388 6.388 14 N -0.328 5.328 15 C 0.070 3.930 16 C -0.101 4.101 17 C -0.094 4.094 18 C -0.064 4.064 19 N -0.143 5.143 20 N -0.100 5.100 21 C -0.174 4.174 22 N -0.050 5.050 23 C -0.136 4.136 24 H 0.053 0.947 25 H 0.116 0.884 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.249 0.751 29 H 0.180 0.820 30 H 0.178 0.822 31 H 0.240 0.760 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.368 -0.084 -12.788 12.793 hybrid contribution -0.314 1.141 1.792 2.148 sum -0.682 1.057 -10.995 11.067 Atomic orbital electron populations 1.21788 0.95972 1.00205 1.01337 1.18939 0.94419 0.97062 0.88321 0.92411 1.21086 1.31658 1.13176 0.88759 0.90594 1.24941 0.94849 0.94992 0.99228 1.69852 1.36643 1.22893 1.23903 0.86410 0.78532 0.80252 0.81828 1.20557 1.21174 1.19636 1.22503 0.77741 0.84682 0.83706 1.90576 1.35743 1.26468 1.86051 1.44220 1.57753 1.26915 1.03921 1.17262 0.97004 0.91595 0.87090 1.21455 0.96964 0.92328 0.99364 1.20177 1.00297 1.01083 0.87811 1.22410 1.05146 0.81283 0.97586 1.74946 1.20449 1.20364 0.98518 1.74160 1.15624 0.94841 1.25382 1.26351 1.08488 1.02207 0.80373 1.43454 1.42771 1.08551 1.10245 1.20888 1.09078 0.98078 0.85598 0.94675 0.88437 0.96743 0.92712 0.75052 0.82018 0.82187 0.76039 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.87 37.16 0.33 -2.38 16 2 C 0.03 0.73 2.64 -92.93 -0.24 0.49 16 3 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.51 -13.14 8.37 -34.44 -0.29 -13.43 16 5 H 0.08 2.07 6.75 -52.48 -0.35 1.72 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -23.34 11.32 55.43 0.63 -22.71 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 12 C 0.52 10.05 6.90 -10.99 -0.08 9.98 16 13 O -0.52 -11.44 13.14 5.55 0.07 -11.37 16 14 N -0.68 -9.61 5.19 -10.03 -0.05 -9.66 16 15 C 0.17 2.29 6.23 -83.93 -0.52 1.76 16 16 C -0.08 -1.07 8.65 -39.36 -0.34 -1.41 16 17 C -0.07 -0.95 10.10 -39.43 -0.40 -1.35 16 18 C 0.19 2.74 7.91 -156.07 -1.23 1.50 16 19 N -0.30 -4.86 12.31 31.14 0.38 -4.48 16 20 N -0.26 -3.95 12.19 29.85 0.36 -3.58 16 21 C 0.11 1.27 12.97 -89.18 -1.16 0.11 16 22 N -0.37 -4.73 2.95 -63.80 -0.19 -4.92 16 23 C -0.01 -0.11 10.88 -16.42 -0.18 -0.29 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.10 2.22 6.07 -51.93 -0.32 1.91 16 26 H 0.01 0.22 7.69 -51.93 -0.40 -0.18 16 27 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.41 4.54 8.40 -40.82 -0.34 4.19 16 29 H 0.16 2.48 6.46 -52.49 -0.34 2.14 16 30 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.22 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -31.10 280.92 -6.79 -37.89 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.00 Total: 2.65 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -4.21 Total: -3.52 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 1.13 Total: -45.36 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.10 -6.79 -37.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831592086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.041 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds