Wall clock time and date at job start Mon Mar 30 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99649 * 2 1 4 4 H 1.48492 * 109.47311 * 240.00122 * 3 2 1 5 5 H 1.48501 * 109.47327 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46961 * 120.00127 * 3 2 1 7 7 C 1.37877 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99564 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.38289 * 119.93128 * 89.99503 * 10 9 7 12 12 C 1.38094 * 120.07732 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.92834 * 0.02562 * 12 11 10 14 14 N 1.39674 * 120.07895 * 179.97438 * 13 12 11 15 15 C 1.46496 * 120.00146 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.43581 * 327.53521 * 15 14 13 17 17 C 1.54629 * 110.48603 * 204.99699 * 15 14 13 18 18 C 1.54480 * 101.76664 * 216.39148 * 17 15 14 19 19 N 1.46763 * 105.47393 * 25.41343 * 18 17 15 20 20 C 1.34415 * 111.29894 * 343.25623 * 19 18 17 21 21 O 1.21281 * 124.94285 * 180.12105 * 20 19 18 22 22 C 1.38915 * 119.84852 * 0.25007 * 13 12 11 23 23 C 1.38105 * 119.92447 * 359.49313 * 22 13 12 24 24 H 0.97001 * 120.00579 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47621 * 59.99307 * 9 7 2 26 26 H 1.09002 * 109.46805 * 299.99722 * 9 7 2 27 27 H 1.08001 * 119.95597 * 0.02562 * 11 10 9 28 28 H 1.08006 * 120.03636 * 179.97438 * 12 11 10 29 29 H 0.96997 * 119.99579 * 359.97438 * 14 13 12 30 30 H 1.09005 * 110.97125 * 98.26997 * 17 15 14 31 31 H 1.09002 * 110.97294 * 334.51253 * 17 15 14 32 32 H 1.09006 * 110.24508 * 266.41905 * 18 17 15 33 33 H 1.08999 * 110.31871 * 144.45539 * 18 17 15 34 34 H 0.97001 * 124.34660 * 162.97922 * 19 18 17 35 35 H 1.07999 * 120.03985 * 179.72535 * 22 13 12 36 36 H 1.07994 * 119.96650 * 180.25573 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2304 -3.6445 -0.0015 11 6 2.6780 -4.1694 1.1971 12 6 3.5758 -5.2186 1.2008 13 6 4.0299 -5.7466 -0.0011 14 7 4.9384 -6.8074 -0.0010 15 6 5.4165 -7.3625 -1.2696 16 1 4.6395 -7.2960 -2.0311 17 6 5.8669 -8.8299 -1.0828 18 6 7.0814 -8.9103 -2.0341 19 7 7.5846 -7.5360 -2.1436 20 6 6.6702 -6.6461 -1.7208 21 8 6.8264 -5.4435 -1.7058 22 6 3.5827 -5.2132 -1.2033 23 6 2.6807 -4.1674 -1.1999 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8918 26 1 0.6242 -2.5575 0.8881 27 1 2.3249 -3.7582 2.1313 28 1 3.9252 -5.6278 2.1373 29 1 5.2532 -7.1761 0.8391 30 1 5.0827 -9.5211 -1.3920 31 1 6.1660 -9.0179 -0.0516 32 1 6.7706 -9.2772 -3.0124 33 1 7.8487 -9.5606 -1.6142 34 1 8.4654 -7.3005 -2.4746 35 1 3.9371 -5.6183 -2.1396 36 1 2.3295 -3.7549 -2.1342 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902226521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:46 Heat of formation + Delta-G solvation = -9.304211 kcal Electronic energy + Delta-G solvation = -18587.614409 eV Core-core repulsion = 15650.160366 eV Total energy + Delta-G solvation = -2937.454043 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61657 -38.56509 -36.54355 -35.18434 -32.93602 -31.11674 -30.12493 -29.47825 -27.29101 -25.68114 -22.83767 -22.70127 -21.77037 -20.48777 -19.72636 -17.63042 -17.28929 -16.27802 -16.15198 -15.88117 -14.84181 -14.45840 -14.17252 -13.98520 -13.89088 -13.46954 -13.21093 -12.79529 -12.59350 -12.53409 -12.22068 -11.92283 -11.42094 -11.26085 -11.12190 -10.57150 -10.46893 -10.42781 -10.01984 -9.57259 -9.37115 -9.33034 -8.93454 -8.30022 -8.13381 -6.74000 -5.90679 -3.94578 2.22224 2.36775 2.49642 3.07187 3.41286 3.43921 3.49090 3.59359 4.11453 4.16535 4.51992 4.52671 4.62969 4.78103 5.03764 5.10581 5.38889 5.42022 5.49282 5.60384 5.66545 6.10435 6.19417 6.41037 6.46984 6.55370 6.78103 6.79605 6.91652 7.37892 7.38726 7.43795 7.67337 7.83841 8.05072 8.05742 8.06104 8.13945 8.49051 9.11360 9.68663 11.17805 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034185 B = 0.004119 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.876959 B = 6795.949568 C = 7235.887153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.080 4.080 11 C -0.083 4.083 12 C -0.187 4.187 13 C 0.180 3.820 14 N -0.736 5.736 15 C 0.127 3.873 16 H 0.116 0.884 17 C -0.139 4.139 18 C 0.104 3.896 19 N -0.740 5.740 20 C 0.494 3.506 21 O -0.505 6.505 22 C -0.179 4.179 23 C -0.082 4.082 24 H 0.261 0.739 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.397 0.603 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.105 0.895 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.307 -21.953 -2.739 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.017 3.983 10 C -0.081 4.081 11 C -0.102 4.102 12 C -0.209 4.209 13 C 0.082 3.918 14 N -0.370 5.370 15 C 0.016 3.984 16 H 0.133 0.867 17 C -0.178 4.178 18 C -0.021 4.021 19 N -0.398 5.398 20 C 0.277 3.723 21 O -0.377 6.377 22 C -0.201 4.201 23 C -0.101 4.101 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.232 0.768 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.246 0.754 35 H 0.123 0.877 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.108 -21.211 -2.861 24.591 hybrid contribution 1.185 0.855 0.097 1.465 sum 13.294 -20.357 -2.765 24.469 Atomic orbital electron populations 1.69954 1.05987 1.26696 1.51071 1.25008 0.94853 0.99135 0.95411 0.86631 0.79534 0.82980 0.78748 1.20207 1.21334 1.20231 1.21125 0.93114 0.90128 1.50244 0.92555 1.18242 0.92493 0.89660 0.97952 1.20473 0.98918 0.96947 0.91809 1.20807 0.96342 0.94777 0.98246 1.20417 1.03927 1.01406 0.95183 1.17526 0.91030 0.89112 0.94161 1.44040 1.49880 1.38043 1.05047 1.21387 0.94716 0.92077 0.90176 0.86654 1.22908 0.98000 0.95811 1.01053 1.22011 0.96474 0.83683 0.99932 1.46249 1.18318 1.07776 1.67477 1.21810 0.86731 0.87019 0.76777 1.90821 1.80551 1.13519 1.52843 1.20457 1.03163 1.01178 0.95311 1.20837 0.96228 0.94772 0.98263 0.92964 0.95673 0.95668 0.86535 0.87406 0.76836 0.88376 0.89466 0.90789 0.90209 0.75385 0.87696 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -15.01 9.09 -34.44 -0.31 -15.32 16 8 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 9 C 0.05 1.45 5.10 -29.04 -0.15 1.30 16 10 C -0.08 -1.86 5.07 -104.59 -0.53 -2.39 16 11 C -0.08 -1.73 9.69 -39.62 -0.38 -2.11 16 12 C -0.19 -3.35 9.90 -39.38 -0.39 -3.74 16 13 C 0.18 3.07 6.65 -83.79 -0.56 2.52 16 14 N -0.74 -9.39 5.30 -52.18 -0.28 -9.67 16 15 C 0.13 1.33 2.99 -67.94 -0.20 1.13 16 16 H 0.12 1.22 6.41 -51.93 -0.33 0.89 16 17 C -0.14 -0.77 6.87 -25.10 -0.17 -0.94 16 18 C 0.10 0.48 7.78 -3.12 -0.02 0.46 16 19 N -0.74 -6.15 6.24 -59.20 -0.37 -6.52 16 20 C 0.49 6.38 8.07 -10.86 -0.09 6.30 16 21 O -0.51 -9.42 18.02 5.56 0.10 -9.32 16 22 C -0.18 -3.34 9.22 -39.38 -0.36 -3.70 16 23 C -0.08 -1.76 9.69 -39.61 -0.38 -2.14 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 26 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 27 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 29 H 0.40 4.20 8.44 -40.82 -0.34 3.85 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.42 7.82 -51.93 -0.41 0.02 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.41 2.89 8.96 -40.82 -0.37 2.53 16 35 H 0.11 1.76 6.21 -52.49 -0.33 1.43 16 36 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -35.89 307.95 -8.54 -44.42 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.69 Total: 2.68 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -3.65 Total: -17.07 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.09 Total: -42.90 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.10 Total: -9.32 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.89 -8.54 -44.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.118 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds