Wall clock time and date at job start Mon Mar 30 2020 05:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99649 * 2 1 4 4 H 1.48492 * 109.47311 * 240.00122 * 3 2 1 5 5 H 1.48501 * 109.47327 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46961 * 120.00127 * 3 2 1 7 7 C 1.37877 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99564 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.38289 * 119.93128 * 89.99503 * 10 9 7 12 12 C 1.38094 * 120.07732 * 180.02562 * 11 10 9 13 13 C 1.38912 * 119.92834 * 0.02562 * 12 11 10 14 14 N 1.39674 * 120.07895 * 179.97438 * 13 12 11 15 15 C 1.46496 * 120.00146 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.43581 * 327.53521 * 15 14 13 17 17 C 1.54629 * 110.48603 * 204.99699 * 15 14 13 18 18 C 1.54480 * 101.76664 * 216.39148 * 17 15 14 19 19 N 1.46763 * 105.47393 * 25.41343 * 18 17 15 20 20 C 1.34415 * 111.29894 * 343.25623 * 19 18 17 21 21 O 1.21281 * 124.94285 * 180.12105 * 20 19 18 22 22 C 1.38915 * 119.84852 * 0.25007 * 13 12 11 23 23 C 1.38105 * 119.92447 * 359.49313 * 22 13 12 24 24 H 0.97001 * 120.00579 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47621 * 59.99307 * 9 7 2 26 26 H 1.09002 * 109.46805 * 299.99722 * 9 7 2 27 27 H 1.08001 * 119.95597 * 0.02562 * 11 10 9 28 28 H 1.08006 * 120.03636 * 179.97438 * 12 11 10 29 29 H 0.96997 * 119.99579 * 359.97438 * 14 13 12 30 30 H 1.09005 * 110.97125 * 98.26997 * 17 15 14 31 31 H 1.09002 * 110.97294 * 334.51253 * 17 15 14 32 32 H 1.09006 * 110.24508 * 266.41905 * 18 17 15 33 33 H 1.08999 * 110.31871 * 144.45539 * 18 17 15 34 34 H 0.97001 * 124.34660 * 162.97922 * 19 18 17 35 35 H 1.07999 * 120.03985 * 179.72535 * 22 13 12 36 36 H 1.07994 * 119.96650 * 180.25573 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2304 -3.6445 -0.0015 11 6 2.6780 -4.1694 1.1971 12 6 3.5758 -5.2186 1.2008 13 6 4.0299 -5.7466 -0.0011 14 7 4.9384 -6.8074 -0.0010 15 6 5.4165 -7.3625 -1.2696 16 1 4.6395 -7.2960 -2.0311 17 6 5.8669 -8.8299 -1.0828 18 6 7.0814 -8.9103 -2.0341 19 7 7.5846 -7.5360 -2.1436 20 6 6.6702 -6.6461 -1.7208 21 8 6.8264 -5.4435 -1.7058 22 6 3.5827 -5.2132 -1.2033 23 6 2.6807 -4.1674 -1.1999 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8918 26 1 0.6242 -2.5575 0.8881 27 1 2.3249 -3.7582 2.1313 28 1 3.9252 -5.6278 2.1373 29 1 5.2532 -7.1761 0.8391 30 1 5.0827 -9.5211 -1.3920 31 1 6.1660 -9.0179 -0.0516 32 1 6.7706 -9.2772 -3.0124 33 1 7.8487 -9.5606 -1.6142 34 1 8.4654 -7.3005 -2.4746 35 1 3.9371 -5.6183 -2.1396 36 1 2.3295 -3.7549 -2.1342 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902226521.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:46 Heat of formation + Delta-G solvation = -35.933904 kcal Electronic energy + Delta-G solvation = -18588.769159 eV Core-core repulsion = 15650.160366 eV Total energy + Delta-G solvation = -2938.608793 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50340 -40.01729 -37.51898 -36.49446 -34.95695 -32.50039 -31.67151 -30.68694 -28.47368 -27.21147 -24.75123 -23.82720 -22.64640 -21.88759 -20.94207 -18.60498 -18.46090 -18.27947 -17.19310 -16.98427 -16.67826 -15.83149 -15.57433 -14.91012 -14.79588 -14.65055 -14.60428 -14.44716 -14.13669 -13.66699 -13.33929 -13.23305 -13.19440 -12.76711 -12.53750 -12.39458 -12.05991 -11.87311 -11.62502 -11.39898 -11.30863 -10.58642 -10.40784 -10.05418 -9.68696 -8.32813 -7.99540 -6.31001 0.66734 0.85417 1.37672 1.41141 1.48429 1.49809 2.32026 2.40831 2.67403 3.11232 3.12455 3.51049 3.55136 3.96930 4.07084 4.17622 4.23335 4.47382 4.49952 4.71953 4.76644 4.80183 4.95749 5.04494 5.13642 5.18285 5.35031 5.38341 5.53699 5.68697 5.79806 5.87667 5.97879 6.02423 6.21848 6.23651 6.50238 6.81611 6.89331 7.27339 7.36981 8.90797 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034185 B = 0.004119 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.876959 B = 6795.949568 C = 7235.887153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.065 3.935 10 C -0.120 4.120 11 C -0.092 4.092 12 C -0.185 4.185 13 C 0.197 3.803 14 N -0.723 5.723 15 C 0.117 3.883 16 H 0.115 0.885 17 C -0.125 4.125 18 C 0.100 3.900 19 N -0.726 5.726 20 C 0.482 3.518 21 O -0.577 6.577 22 C -0.183 4.183 23 C -0.095 4.095 24 H 0.266 0.734 25 H -0.002 1.002 26 H 0.002 0.998 27 H 0.115 0.885 28 H 0.144 0.856 29 H 0.411 0.589 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.414 0.586 35 H 0.123 0.877 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.680 -24.674 -2.541 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.568 4.568 8 H 0.066 0.934 9 C 0.028 3.972 10 C -0.121 4.121 11 C -0.110 4.110 12 C -0.207 4.207 13 C 0.096 3.904 14 N -0.356 5.356 15 C 0.007 3.993 16 H 0.133 0.867 17 C -0.163 4.163 18 C -0.023 4.023 19 N -0.381 5.381 20 C 0.266 3.734 21 O -0.456 6.456 22 C -0.206 4.206 23 C -0.114 4.114 24 H 0.075 0.925 25 H 0.017 0.983 26 H 0.020 0.980 27 H 0.133 0.867 28 H 0.162 0.838 29 H 0.248 0.752 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.253 0.747 35 H 0.141 0.859 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.528 -24.042 -2.670 28.217 hybrid contribution 0.547 1.495 -0.012 1.592 sum 15.075 -22.547 -2.682 27.254 Atomic orbital electron populations 1.70072 1.07527 1.27930 1.51491 1.25912 0.95808 1.02959 0.94659 0.85535 0.78365 0.78333 0.79031 1.19676 1.20032 1.19330 1.21419 0.92885 0.91751 1.50725 0.93435 1.17970 0.92754 0.91109 0.95398 1.20167 1.00574 0.97584 0.93797 1.20853 0.97180 0.95833 0.97166 1.20677 1.02713 1.00219 0.97063 1.17631 0.90364 0.89169 0.93265 1.44099 1.48200 1.36288 1.07011 1.21691 0.93701 0.94898 0.88978 0.86748 1.22984 0.98867 0.92114 1.02311 1.22381 0.96949 0.81709 1.01252 1.46309 1.17806 1.08848 1.65186 1.22253 0.88153 0.86477 0.76479 1.90787 1.82044 1.16505 1.56215 1.20578 1.02491 1.00506 0.96978 1.20813 0.97328 0.95980 0.97258 0.92548 0.98341 0.97992 0.86729 0.83803 0.75158 0.85761 0.88090 0.88652 0.87161 0.74731 0.85943 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.69 13.29 21.45 0.28 -58.40 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.96 47.16 29.54 68.60 2.03 49.18 16 4 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.53 -32.76 9.09 25.60 0.23 -32.53 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.06 3.75 5.10 29.10 0.15 3.90 16 10 C -0.12 -5.86 5.07 -19.84 -0.10 -5.96 16 11 C -0.09 -3.90 9.69 22.25 0.22 -3.69 16 12 C -0.18 -6.34 9.90 22.40 0.22 -6.12 16 13 C 0.20 6.43 6.65 38.22 0.25 6.69 16 14 N -0.72 -16.30 5.30 -319.00 -1.69 -17.99 16 15 C 0.12 2.10 2.99 44.98 0.13 2.23 16 16 H 0.11 2.11 6.41 -2.39 -0.02 2.09 16 17 C -0.12 -0.74 6.87 31.65 0.22 -0.53 16 18 C 0.10 0.43 7.78 86.83 0.68 1.10 16 19 N -0.73 -9.88 6.24 -459.81 -2.87 -12.75 16 20 C 0.48 11.61 8.07 87.90 0.71 12.32 16 21 O -0.58 -21.56 18.02 -3.03 -0.05 -21.62 16 22 C -0.18 -6.83 9.22 22.40 0.21 -6.62 16 23 C -0.10 -4.24 9.69 22.25 0.22 -4.02 16 24 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 25 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 16 26 H 0.00 0.11 8.08 -2.39 -0.02 0.09 16 27 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 28 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.41 7.06 8.44 -92.71 -0.78 6.28 16 30 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.10 0.40 7.82 -2.39 -0.02 0.38 16 32 H 0.10 0.12 8.14 -2.38 -0.02 0.10 16 33 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.41 4.85 8.96 -92.71 -0.83 4.02 16 35 H 0.12 4.04 6.21 -2.91 -0.02 4.02 16 36 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -83.20 307.95 0.78 -82.41 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -0.50 Total: 11.65 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 3.59 Total: -32.48 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -4.28 Total: -89.14 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -83.20 0.78 -82.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902226521.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.479 kcal (2) G-P(sol) polarization free energy of solvation -83.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds