Wall clock time and date at job start Mon Mar 30 2020 04:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99821 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00164 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99873 * 179.97438 * 11 10 9 13 13 O 1.21525 * 119.99650 * 0.02562 * 12 11 10 14 14 C 1.48136 * 119.99955 * 179.97438 * 12 11 10 15 15 C 1.41280 * 119.95796 * 180.02562 * 14 12 11 16 16 C 1.35364 * 119.31309 * 180.02562 * 15 14 12 17 17 N 1.36621 * 119.18384 * 359.97438 * 16 15 14 18 18 N 1.39960 * 132.48508 * 180.02562 * 17 16 15 19 19 C 1.31534 * 108.89022 * 180.02562 * 18 17 16 20 20 C 1.38443 * 109.08471 * 359.97438 * 19 18 17 21 21 C 1.37447 * 119.94355 * 0.02562 * 17 16 15 22 22 N 1.32018 * 119.95938 * 359.73229 * 14 12 11 23 23 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 25 25 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 26 26 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 27 27 H 1.09000 * 109.47312 * 300.00049 * 10 9 7 28 28 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 29 29 H 1.07993 * 120.34346 * 359.97438 * 15 14 12 30 30 H 1.08000 * 120.41215 * 180.02562 * 16 15 14 31 31 H 1.07994 * 125.45876 * 179.97438 * 19 18 17 32 32 H 1.08001 * 126.17494 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 7 1.5127 -4.9309 -0.0033 12 6 2.1866 -6.0981 -0.0047 13 8 3.4018 -6.0980 -0.0051 14 6 1.4459 -7.3809 -0.0047 15 6 2.1532 -8.6040 -0.0056 16 6 1.4632 -9.7685 -0.0061 17 7 0.0974 -9.7337 -0.0051 18 7 -0.8739 -10.7414 -0.0048 19 6 -2.0655 -10.1843 -0.0042 20 6 -1.9214 -8.8074 -0.0036 21 6 -0.5581 -8.5256 -0.0041 22 7 0.1257 -7.3800 0.0022 23 1 -0.4851 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5576 0.8880 26 1 2.8719 -3.6051 0.8873 27 1 2.8719 -3.6036 -0.8927 28 1 0.5427 -4.9308 -0.0033 29 1 3.2331 -8.6096 -0.0068 30 1 1.9858 -10.7137 -0.0064 31 1 -3.0055 -10.7158 -0.0043 32 1 -2.7222 -8.0827 -0.0027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907322313.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:45 Heat of formation + Delta-G solvation = 78.685288 kcal Electronic energy + Delta-G solvation = -17926.022463 eV Core-core repulsion = 14888.843587 eV Total energy + Delta-G solvation = -3037.178875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.52932 -39.69972 -37.77072 -35.10604 -34.35168 -32.85929 -31.38393 -29.95932 -29.11993 -26.08575 -24.66298 -23.63349 -21.85576 -21.11369 -20.64336 -18.67227 -17.83604 -17.05763 -16.42597 -16.34133 -15.28456 -15.07592 -14.95026 -14.51819 -14.31642 -14.13647 -13.50725 -13.39445 -13.17724 -12.45458 -12.31690 -11.61274 -11.55294 -11.24920 -11.05782 -10.67468 -10.50125 -10.38611 -10.01181 -9.77459 -9.57660 -9.28164 -8.66498 -8.41109 -8.18844 -6.09943 -4.13418 -0.04650 0.56048 1.76850 2.30240 2.61457 3.07642 3.29193 3.35545 3.39285 3.49797 3.57072 3.84244 4.25957 4.41150 4.68374 4.77241 5.08397 5.10118 5.27053 5.30116 5.51953 5.68797 6.02757 6.23030 6.24656 6.26022 6.63309 6.72839 7.11005 7.18431 7.49329 7.58882 7.82361 7.88017 8.21704 8.37256 8.92309 9.51502 11.01561 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.037497 B = 0.003643 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.539422 B = 7685.026975 C = 8411.118316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.118 3.882 11 N -0.691 5.691 12 C 0.558 3.442 13 O -0.531 6.531 14 C 0.176 3.824 15 C -0.178 4.178 16 C 0.157 3.843 17 N -0.309 5.309 18 N -0.313 5.313 19 C 0.086 3.914 20 C -0.252 4.252 21 C 0.254 3.746 22 N -0.430 5.430 23 H 0.262 0.738 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.410 0.590 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.200 0.800 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 -20.014 -0.021 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.004 4.004 11 N -0.340 5.340 12 C 0.340 3.660 13 O -0.408 6.408 14 C 0.009 3.991 15 C -0.203 4.203 16 C 0.023 3.977 17 N -0.081 5.081 18 N -0.138 5.138 19 C -0.091 4.091 20 C -0.282 4.282 21 C 0.025 3.975 22 N -0.145 5.145 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.246 0.754 29 H 0.198 0.802 30 H 0.203 0.797 31 H 0.216 0.784 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.097 -20.307 -0.008 20.337 hybrid contribution -0.133 0.923 -0.014 0.932 sum -1.230 -19.385 -0.022 19.424 Atomic orbital electron populations 1.69956 1.06092 1.26930 1.50128 1.24997 0.94890 0.99421 0.94947 0.86506 0.79821 0.82989 0.78198 1.20555 1.21169 1.19716 1.21022 0.93234 0.90282 1.51643 0.92170 1.19347 0.94185 0.90901 0.98182 1.21918 0.96253 0.80915 1.01297 1.46310 1.11690 1.05941 1.70032 1.17627 0.86729 0.82761 0.78851 1.90798 1.12383 1.86786 1.50805 1.22072 0.88955 0.95602 0.92513 1.21701 1.03544 0.89655 1.05365 1.21987 0.79270 1.01375 0.95053 1.47352 1.06082 1.07973 1.46741 1.77928 0.95955 1.08852 1.31107 1.23837 0.96566 0.93398 0.95254 1.21138 0.92189 0.96255 1.18639 1.20692 0.94152 0.80948 1.01662 1.68026 1.07869 1.25441 1.13145 0.92793 0.95721 0.95700 0.91900 0.91895 0.75378 0.80237 0.79750 0.78380 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 11 N -0.69 -12.26 5.55 -61.15 -0.34 -12.60 16 12 C 0.56 9.33 7.82 -12.20 -0.10 9.24 16 13 O -0.53 -9.96 16.37 5.34 0.09 -9.88 16 14 C 0.18 2.45 6.79 -82.57 -0.56 1.89 16 15 C -0.18 -1.88 9.58 -39.45 -0.38 -2.26 16 16 C 0.16 1.48 11.30 -16.44 -0.19 1.29 16 17 N -0.31 -3.75 3.91 -12.18 -0.05 -3.80 16 18 N -0.31 -3.67 12.66 30.45 0.39 -3.28 16 19 C 0.09 0.82 11.93 -17.60 -0.21 0.61 16 20 C -0.25 -2.81 10.92 -39.14 -0.43 -3.24 16 21 C 0.25 3.41 7.92 -155.61 -1.23 2.18 16 22 N -0.43 -6.21 9.67 -8.79 -0.08 -6.29 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.41 6.90 7.82 -40.82 -0.32 6.58 16 29 H 0.18 1.55 7.69 -52.49 -0.40 1.14 16 30 H 0.19 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.20 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 292.13 15.07 4.40 4.40 Total: -1.00 -32.54 292.13 -6.77 -39.31 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -3.22 Total: 2.00 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -3.67 Total: -0.79 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.65 Total: -51.18 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.54 -6.77 -39.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907322313.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.998 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds