Wall clock time and date at job start Mon Mar 30 2020 04:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47238 * 66.73278 * 3 2 1 5 5 C 1.36819 * 120.00139 * 264.01901 * 4 3 2 6 6 H 1.07999 * 119.99442 * 201.10100 * 5 4 3 7 7 C 1.39075 * 120.00147 * 21.09287 * 5 4 3 8 8 N 1.31356 * 119.99900 * 11.04732 * 7 5 4 9 9 Si 1.86797 * 119.99919 * 191.04249 * 7 5 4 10 10 H 1.48497 * 109.47236 * 60.00486 * 9 7 5 11 11 H 1.48502 * 109.46677 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47266 * 300.00306 * 9 7 5 13 13 C 1.34777 * 119.99832 * 84.01161 * 4 3 2 14 14 O 1.21655 * 120.00005 * 180.02562 * 13 4 3 15 15 C 1.46954 * 119.99657 * 0.02562 * 13 4 3 16 16 C 1.33128 * 119.99613 * 185.31842 * 15 13 4 17 17 C 1.50698 * 120.00057 * 5.84691 * 16 15 13 18 18 N 1.46500 * 109.47115 * 173.40664 * 17 16 15 19 19 C 1.34434 * 126.82092 * 125.00195 * 18 17 16 20 20 N 1.30831 * 108.07491 * 179.97438 * 19 18 17 21 21 C 1.33245 * 109.82964 * 359.97438 * 20 19 18 22 22 N 1.30715 * 108.94487 * 359.76017 * 21 20 19 23 23 H 4.40641 * 5.51324 * 180.02562 * 4 1 2 24 24 H 1.09005 * 109.46910 * 306.73136 * 3 2 1 25 25 H 1.08998 * 109.46820 * 186.73419 * 3 2 1 26 26 H 0.96995 * 119.99763 * 179.97438 * 8 7 5 27 27 H 1.07996 * 120.00402 * 5.31779 * 15 13 4 28 28 H 1.07998 * 119.99831 * 185.84822 * 16 15 13 29 29 H 1.09002 * 109.47164 * 53.40489 * 17 16 15 30 30 H 1.09007 * 109.47125 * 293.40522 * 17 16 15 31 31 H 1.08001 * 125.96217 * 359.97438 * 19 18 17 32 32 H 1.07998 * 125.52544 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5447 -1.2689 5 6 3.4797 -1.8657 -1.3581 6 1 4.1406 -2.1992 -2.1445 7 6 2.9795 -2.7789 -0.4361 8 7 2.0145 -2.4249 0.3817 9 14 3.6801 -4.5089 -0.3608 10 1 5.1305 -4.4425 -0.0492 11 1 2.9807 -5.2804 0.6980 12 1 3.4855 -5.1792 -1.6715 13 6 3.2441 0.2548 -2.3484 14 8 3.6494 -0.1982 -3.4022 15 6 2.8739 1.6737 -2.2523 16 6 2.8806 2.4385 -3.3420 17 6 3.1388 1.8229 -4.6930 18 7 2.9392 2.8324 -5.7358 19 6 3.8208 3.1980 -6.6826 20 7 3.2645 4.1254 -7.4189 21 6 2.0334 4.3768 -6.9753 22 7 1.7865 3.6057 -5.9490 23 1 -1.0499 0.0001 -0.0002 24 1 3.0096 -0.6138 0.8237 25 1 3.0089 1.0214 0.1205 26 1 1.6654 -3.0619 1.0245 27 1 2.5963 2.0960 -1.2979 28 1 2.7010 3.5001 -3.2576 29 1 2.4488 0.9943 -4.8527 30 1 4.1641 1.4552 -4.7348 31 1 4.8148 2.7963 -6.8126 32 1 1.3493 5.0980 -7.3975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907979982.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:26 Heat of formation + Delta-G solvation = 152.785444 kcal Electronic energy + Delta-G solvation = -18432.971034 eV Core-core repulsion = 15399.005382 eV Total energy + Delta-G solvation = -3033.965651 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.86432 -38.95078 -35.87312 -34.49056 -32.40027 -31.67732 -31.34044 -31.04250 -27.08408 -26.45805 -24.79196 -22.18521 -21.80128 -21.09987 -18.35768 -17.85371 -17.43403 -16.71783 -16.21677 -15.52123 -14.96974 -14.45222 -14.27112 -14.13781 -13.97774 -13.27655 -12.96797 -12.82072 -12.41907 -12.36374 -11.89795 -11.58947 -11.43636 -11.09401 -10.67449 -10.48052 -9.90650 -9.69002 -9.62705 -9.49002 -9.39842 -8.99441 -8.93122 -8.50037 -7.99667 -6.46751 -4.03304 1.80789 1.88657 2.54610 3.08251 3.11664 3.15867 3.18189 3.67556 3.95551 4.07434 4.18411 4.43135 4.70920 4.85710 4.98268 5.08473 5.21019 5.39114 5.52793 5.75318 5.78962 6.04563 6.23882 6.33199 6.55261 6.61800 6.68697 6.74144 6.98210 7.02714 7.38279 7.91034 8.21330 8.26767 8.75362 8.96003 9.17553 9.73419 10.51326 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.030625 B = 0.004731 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.073465 B = 5916.936275 C = 6532.251080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.112 4.112 3 C 0.229 3.771 4 N -0.422 5.422 5 C -0.309 4.309 6 H 0.106 0.894 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.931 3.069 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.462 3.538 14 O -0.593 6.593 15 C -0.166 4.166 16 C -0.127 4.127 17 C 0.169 3.831 18 N -0.369 5.369 19 C 0.250 3.750 20 N -0.558 5.558 21 C 0.185 3.815 22 N -0.319 5.319 23 H 0.199 0.801 24 H 0.117 0.883 25 H 0.062 0.938 26 H 0.272 0.728 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.217 0.783 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.635 8.180 -3.093 8.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.113 4.113 3 C 0.106 3.894 4 N -0.138 5.138 5 C -0.437 4.437 6 H 0.123 0.877 7 C -0.174 4.174 8 N -0.500 5.500 9 Si 0.757 3.243 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.197 1.197 13 C 0.254 3.746 14 O -0.481 6.481 15 C -0.187 4.187 16 C -0.148 4.148 17 C 0.050 3.950 18 N -0.161 5.161 19 C -0.047 4.047 20 N -0.286 5.286 21 C -0.118 4.118 22 N -0.148 5.148 23 H 0.216 0.784 24 H 0.135 0.865 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.145 0.855 31 H 0.233 0.767 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.246 7.872 -3.187 8.583 hybrid contribution -0.077 -1.064 0.447 1.157 sum 1.168 6.808 -2.740 7.431 Atomic orbital electron populations 1.24286 0.95413 1.06121 1.02158 1.23094 0.94276 0.95485 0.98476 1.18402 0.84368 0.96918 0.89705 1.43592 1.53721 1.09208 1.07239 1.19701 1.26967 0.82003 1.14982 0.87651 1.25448 0.95058 1.00320 0.96579 1.69952 1.22980 1.36199 1.20885 0.85917 0.78984 0.81154 0.78235 1.19695 1.20844 1.19719 1.18165 0.85891 0.86447 0.84061 1.90550 1.52993 1.76468 1.28085 1.22943 1.01756 0.95038 0.99004 1.23307 0.99469 0.99066 0.92987 1.21277 1.05438 0.86185 0.82103 1.51045 1.09936 1.30164 1.24929 1.26034 0.97861 0.93658 0.87136 1.70498 1.09185 1.18406 1.30485 1.25933 0.93710 0.99221 0.92940 1.78038 1.06790 1.09461 1.20537 0.78388 0.86539 0.91982 0.91700 0.85833 0.86159 0.87132 0.85518 0.76669 0.77141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.32 19.25 29.55 0.57 -4.75 16 2 C -0.11 -2.43 11.26 -37.12 -0.42 -2.85 16 3 C 0.23 4.83 4.79 -6.83 -0.03 4.80 16 4 N -0.42 -10.08 2.59 -119.33 -0.31 -10.39 16 5 C -0.31 -7.99 9.32 -15.02 -0.14 -8.13 16 6 H 0.11 2.83 7.38 -52.49 -0.39 2.44 16 7 C 0.03 0.76 5.10 -17.44 -0.09 0.67 16 8 N -0.86 -21.54 9.03 55.50 0.50 -21.04 16 9 Si 0.93 19.57 29.57 -169.99 -5.03 14.54 16 10 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.46 10.42 7.43 -12.73 -0.09 10.33 16 14 O -0.59 -14.41 12.87 5.23 0.07 -14.34 16 15 C -0.17 -2.99 9.09 -37.83 -0.34 -3.33 16 16 C -0.13 -2.04 9.81 -36.09 -0.35 -2.40 16 17 C 0.17 2.71 5.12 -5.19 -0.03 2.69 16 18 N -0.37 -5.56 3.68 -63.81 -0.23 -5.80 16 19 C 0.25 3.26 12.63 -90.65 -1.14 2.11 16 20 N -0.56 -7.94 11.19 -15.83 -0.18 -8.12 16 21 C 0.18 2.52 13.03 -91.81 -1.20 1.33 16 22 N -0.32 -5.07 12.56 29.29 0.37 -4.70 16 23 H 0.20 3.31 7.80 -54.10 -0.42 2.89 16 24 H 0.12 2.59 6.36 -51.93 -0.33 2.26 16 25 H 0.06 1.08 6.38 -51.93 -0.33 0.75 16 26 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 27 H 0.12 2.00 6.26 -52.49 -0.33 1.67 16 28 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.11 2.06 7.32 -51.93 -0.38 1.68 16 30 H 0.13 1.95 7.12 -51.93 -0.37 1.58 16 31 H 0.22 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.21 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 290.75 15.07 4.38 4.38 Total: -1.00 -30.53 290.75 -6.65 -37.19 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -2.95 Total: 7.81 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.27 Total: 0.46 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.15 Total: -50.05 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.07 Total: -14.34 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.53 -6.65 -37.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907979982.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.973 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds