Wall clock time and date at job start Mon Mar 30 2020 04:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31203 * 1 3 3 Si 1.86796 * 119.99996 * 2 1 4 4 H 1.48490 * 109.47423 * 275.13988 * 3 2 1 5 5 H 1.48495 * 109.47319 * 35.14443 * 3 2 1 6 6 H 1.48510 * 109.47173 * 155.14093 * 3 2 1 7 7 C 1.39298 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99784 * 341.12612 * 7 2 1 9 9 N 1.36537 * 119.99976 * 161.13066 * 7 2 1 10 10 C 1.34770 * 119.99838 * 316.35228 * 9 7 2 11 11 O 1.21573 * 120.00180 * 2.61109 * 10 9 7 12 12 C 1.48080 * 119.99920 * 182.60669 * 10 9 7 13 13 C 1.39496 * 119.54871 * 173.02828 * 12 10 9 14 14 C 1.38270 * 119.21683 * 180.02562 * 13 12 10 15 15 C 1.40244 * 118.34202 * 0.25008 * 14 13 12 16 16 C 1.47243 * 120.48159 * 179.74641 * 15 14 13 17 17 O 1.21242 * 120.00212 * 180.02562 * 16 15 14 18 18 C 1.40030 * 119.03789 * 359.51074 * 15 14 13 19 19 N 1.31349 * 120.68423 * 0.49921 * 18 15 14 20 20 C 1.46501 * 120.00011 * 136.35227 * 9 7 2 21 21 C 1.53003 * 117.49598 * 1.42622 * 20 9 7 22 22 C 1.53001 * 117.49953 * 292.80355 * 20 9 7 23 23 H 0.96994 * 120.00071 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.39518 * 0.02562 * 13 12 10 25 25 H 1.07998 * 120.83287 * 179.97438 * 14 13 12 26 26 H 1.08004 * 119.99693 * 0.02562 * 16 15 14 27 27 H 1.08005 * 119.65644 * 180.24652 * 18 15 14 28 28 H 1.08996 * 115.54591 * 147.12947 * 20 9 7 29 29 H 1.08998 * 117.50542 * 359.97438 * 21 20 9 30 30 H 1.08996 * 117.49529 * 145.02214 * 21 20 9 31 31 H 1.09001 * 117.49809 * 214.98148 * 22 20 9 32 32 H 1.09003 * 117.49957 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2460 1.6177 0.0000 4 1 2.3849 2.1091 -1.3943 5 1 1.5021 2.6188 0.8059 6 1 3.5938 1.4112 0.5886 7 6 2.0085 -1.2064 -0.0005 8 1 1.5120 -2.1167 0.3016 9 7 3.3188 -1.2380 -0.3830 10 6 3.7202 -0.5502 -1.4703 11 8 2.9256 0.1362 -2.0829 12 6 5.1292 -0.6306 -1.9187 13 6 5.5026 -0.0356 -3.1239 14 6 6.8200 -0.1153 -3.5363 15 6 7.7323 -0.8012 -2.7215 16 6 9.1455 -0.9196 -3.1179 17 8 9.9267 -1.5149 -2.4071 18 6 7.2810 -1.3676 -1.5230 19 7 6.0203 -1.2688 -1.1679 20 6 4.2885 -2.0195 0.3886 21 6 3.7646 -2.8049 1.5927 22 6 4.6076 -1.5463 1.8082 23 1 -0.4850 0.8400 0.0004 24 1 4.7714 0.4812 -3.7278 25 1 7.1375 0.3355 -4.4649 26 1 9.4860 -0.4761 -4.0419 27 1 7.9759 -1.8946 -0.8859 28 1 5.0996 -2.4637 -0.1882 29 1 2.6987 -2.7398 1.8110 30 1 4.2312 -3.7660 1.8082 31 1 5.6288 -1.6795 2.1655 32 1 4.0965 -0.6533 2.1679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:59 Heat of formation + Delta-G solvation = 31.904087 kcal Electronic energy + Delta-G solvation = -19232.766253 eV Core-core repulsion = 16161.266042 eV Total energy + Delta-G solvation = -3071.500212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.52138 -39.13017 -38.11770 -36.37169 -33.11776 -32.87921 -31.58463 -31.16133 -26.54705 -24.49375 -23.73940 -22.08632 -21.62429 -21.04925 -19.90262 -17.90948 -17.15611 -16.40460 -16.19411 -15.44297 -15.28903 -14.71583 -14.54043 -14.26354 -14.00412 -13.69835 -13.42605 -12.98250 -12.82731 -12.61943 -12.42661 -11.62804 -11.18523 -10.73683 -10.38789 -10.29234 -10.17825 -10.04293 -9.85010 -9.77403 -9.09186 -9.05824 -8.66409 -8.49553 -7.58726 -6.43025 -4.10746 0.27304 1.32171 2.18772 3.19324 3.41354 3.51638 3.57277 3.97955 4.14254 4.22864 4.40179 4.51139 4.73447 4.74914 4.91767 4.95446 5.13576 5.28055 5.49545 5.72948 5.80181 5.86272 5.92922 5.97323 6.09565 6.29278 6.45441 6.62463 6.90965 6.99523 7.21595 7.61099 7.77340 7.95624 8.57283 8.72599 9.17804 9.64744 10.59409 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.007307 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.553872 B = 3831.277856 C = 4492.033970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.092 3.908 3 Si 0.915 3.085 4 H -0.251 1.251 5 H -0.305 1.305 6 H -0.277 1.277 7 C -0.335 4.335 8 H 0.105 0.895 9 N -0.393 5.393 10 C 0.465 3.535 11 O -0.547 6.547 12 C 0.145 3.855 13 C -0.147 4.147 14 C -0.029 4.029 15 C -0.262 4.262 16 C 0.392 3.608 17 O -0.465 6.465 18 C 0.155 3.845 19 N -0.470 5.470 20 C 0.064 3.936 21 C -0.186 4.186 22 C -0.188 4.188 23 H 0.278 0.722 24 H 0.151 0.849 25 H 0.144 0.856 26 H 0.104 0.896 27 H 0.165 0.835 28 H 0.154 0.846 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.055 -0.956 -4.383 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.120 4.120 3 Si 0.745 3.255 4 H -0.176 1.176 5 H -0.235 1.235 6 H -0.202 1.202 7 C -0.461 4.461 8 H 0.123 0.877 9 N -0.108 5.108 10 C 0.257 3.743 11 O -0.431 6.431 12 C 0.008 3.992 13 C -0.168 4.168 14 C -0.054 4.054 15 C -0.266 4.266 16 C 0.251 3.749 17 O -0.338 6.338 18 C -0.006 4.006 19 N -0.181 5.181 20 C -0.041 4.041 21 C -0.224 4.224 22 C -0.227 4.227 23 H 0.088 0.912 24 H 0.169 0.831 25 H 0.162 0.838 26 H 0.121 0.879 27 H 0.182 0.818 28 H 0.170 0.830 29 H 0.124 0.876 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.533 -1.241 -3.513 14.037 hybrid contribution 0.484 1.256 -0.683 1.510 sum 14.017 0.015 -4.196 14.632 Atomic orbital electron populations 1.69643 1.07089 1.28973 1.41851 1.25464 0.94999 0.99903 0.91654 0.86276 0.79228 0.81423 0.78597 1.17613 1.23454 1.20249 1.19012 0.83530 0.96354 1.47232 0.87742 1.43086 1.07806 1.40069 1.19881 1.17771 0.85668 0.88191 0.82705 1.90629 1.52642 1.42878 1.56992 1.22096 0.94841 0.91025 0.91263 1.22067 0.96749 1.00494 0.97460 1.21750 0.92289 0.93331 0.98078 1.21917 0.97981 1.07020 0.99642 1.23903 0.85967 0.76122 0.88950 1.90517 1.56494 1.33283 1.53549 1.23280 0.92278 0.92494 0.92512 1.68276 1.01999 1.15876 1.31967 1.22757 0.95094 0.98937 0.87310 1.23209 1.01295 0.94615 1.03278 1.23104 0.99635 0.98750 1.01194 0.91195 0.83140 0.83841 0.87935 0.81803 0.82973 0.87560 0.89507 0.89523 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.74 13.95 55.51 0.77 -23.97 16 2 C 0.09 2.64 4.86 -17.43 -0.08 2.56 16 3 Si 0.91 24.05 24.79 -169.99 -4.21 19.84 16 4 H -0.25 -6.82 6.31 56.52 0.36 -6.46 16 5 H -0.31 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.33 -9.22 8.56 -15.06 -0.13 -9.35 16 8 H 0.11 2.97 7.18 -52.48 -0.38 2.59 16 9 N -0.39 -9.67 2.46 -108.73 -0.27 -9.94 16 10 C 0.47 11.38 5.96 -12.22 -0.07 11.31 16 11 O -0.55 -14.96 11.70 5.30 0.06 -14.89 16 12 C 0.14 2.84 6.67 -82.92 -0.55 2.29 16 13 C -0.15 -2.34 9.61 -39.10 -0.38 -2.71 16 14 C -0.03 -0.33 9.94 -38.82 -0.39 -0.72 16 15 C -0.26 -3.12 5.89 -104.81 -0.62 -3.74 16 16 C 0.39 3.80 11.48 34.39 0.39 4.20 16 17 O -0.47 -6.13 17.19 5.59 0.10 -6.04 16 18 C 0.15 2.19 10.76 -17.09 -0.18 2.01 16 19 N -0.47 -8.22 5.96 -9.42 -0.06 -8.28 16 20 C 0.06 1.30 5.12 -67.93 -0.35 0.95 16 21 C -0.19 -3.39 9.80 -26.73 -0.26 -3.65 16 22 C -0.19 -3.50 10.38 -26.73 -0.28 -3.78 16 23 H 0.28 7.64 8.30 -40.82 -0.34 7.30 16 24 H 0.15 2.39 7.64 -52.49 -0.40 1.99 16 25 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.10 0.56 8.06 -52.48 -0.42 0.13 16 27 H 0.16 2.04 7.65 -52.48 -0.40 1.64 16 28 H 0.15 2.86 5.29 -52.33 -0.28 2.59 16 29 H 0.11 2.14 6.59 -51.93 -0.34 1.80 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 LS Contribution 278.80 15.07 4.20 4.20 Total: -1.00 -33.08 278.80 -5.39 -38.47 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.09 Total: 1.24 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.89 Total: -0.64 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.45 Total: -42.18 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.16 Total: -20.93 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.21 Total: 19.84 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.08 -5.39 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.374 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds