Wall clock time and date at job start Mon Mar 30 2020 04:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31203 * 1 3 3 Si 1.86796 * 119.99996 * 2 1 4 4 H 1.48490 * 109.47423 * 275.13988 * 3 2 1 5 5 H 1.48495 * 109.47319 * 35.14443 * 3 2 1 6 6 H 1.48510 * 109.47173 * 155.14093 * 3 2 1 7 7 C 1.39298 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99784 * 341.12612 * 7 2 1 9 9 N 1.36537 * 119.99976 * 161.13066 * 7 2 1 10 10 C 1.34770 * 119.99838 * 316.35228 * 9 7 2 11 11 O 1.21573 * 120.00180 * 2.61109 * 10 9 7 12 12 C 1.48080 * 119.99920 * 182.60669 * 10 9 7 13 13 C 1.39496 * 119.54871 * 173.02828 * 12 10 9 14 14 C 1.38270 * 119.21683 * 180.02562 * 13 12 10 15 15 C 1.40244 * 118.34202 * 0.25008 * 14 13 12 16 16 C 1.47243 * 120.48159 * 179.74641 * 15 14 13 17 17 O 1.21242 * 120.00212 * 180.02562 * 16 15 14 18 18 C 1.40030 * 119.03789 * 359.51074 * 15 14 13 19 19 N 1.31349 * 120.68423 * 0.49921 * 18 15 14 20 20 C 1.46501 * 120.00011 * 136.35227 * 9 7 2 21 21 C 1.53003 * 117.49598 * 1.42622 * 20 9 7 22 22 C 1.53001 * 117.49953 * 292.80355 * 20 9 7 23 23 H 0.96994 * 120.00071 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.39518 * 0.02562 * 13 12 10 25 25 H 1.07998 * 120.83287 * 179.97438 * 14 13 12 26 26 H 1.08004 * 119.99693 * 0.02562 * 16 15 14 27 27 H 1.08005 * 119.65644 * 180.24652 * 18 15 14 28 28 H 1.08996 * 115.54591 * 147.12947 * 20 9 7 29 29 H 1.08998 * 117.50542 * 359.97438 * 21 20 9 30 30 H 1.08996 * 117.49529 * 145.02214 * 21 20 9 31 31 H 1.09001 * 117.49809 * 214.98148 * 22 20 9 32 32 H 1.09003 * 117.49957 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2460 1.6177 0.0000 4 1 2.3849 2.1091 -1.3943 5 1 1.5021 2.6188 0.8059 6 1 3.5938 1.4112 0.5886 7 6 2.0085 -1.2064 -0.0005 8 1 1.5120 -2.1167 0.3016 9 7 3.3188 -1.2380 -0.3830 10 6 3.7202 -0.5502 -1.4703 11 8 2.9256 0.1362 -2.0829 12 6 5.1292 -0.6306 -1.9187 13 6 5.5026 -0.0356 -3.1239 14 6 6.8200 -0.1153 -3.5363 15 6 7.7323 -0.8012 -2.7215 16 6 9.1455 -0.9196 -3.1179 17 8 9.9267 -1.5149 -2.4071 18 6 7.2810 -1.3676 -1.5230 19 7 6.0203 -1.2688 -1.1679 20 6 4.2885 -2.0195 0.3886 21 6 3.7646 -2.8049 1.5927 22 6 4.6076 -1.5463 1.8082 23 1 -0.4850 0.8400 0.0004 24 1 4.7714 0.4812 -3.7278 25 1 7.1375 0.3355 -4.4649 26 1 9.4860 -0.4761 -4.0419 27 1 7.9759 -1.8946 -0.8859 28 1 5.0996 -2.4637 -0.1882 29 1 2.6987 -2.7398 1.8110 30 1 4.2312 -3.7660 1.8082 31 1 5.6288 -1.6795 2.1655 32 1 4.0965 -0.6533 2.1679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616436.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:59 Heat of formation + Delta-G solvation = 8.460349 kcal Electronic energy + Delta-G solvation = -19233.782850 eV Core-core repulsion = 16161.266042 eV Total energy + Delta-G solvation = -3072.516808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.87196 -40.50541 -39.33530 -38.10681 -35.05786 -34.12189 -33.35452 -32.47604 -28.11760 -26.03733 -24.91896 -23.58290 -23.00809 -22.34327 -21.58687 -19.65815 -18.23783 -18.08400 -17.46494 -17.10587 -16.64742 -16.10785 -15.76654 -15.73689 -15.42777 -15.17977 -15.02813 -14.78108 -14.24485 -14.06199 -13.89853 -13.45133 -12.92544 -12.50153 -12.23546 -12.12986 -11.65572 -11.48459 -11.08491 -10.99521 -10.87289 -10.82732 -10.23535 -9.93387 -9.45782 -8.55005 -6.26546 -0.85069 0.21842 1.05492 1.26062 1.32552 1.40823 1.98251 2.31454 2.42517 2.81863 2.92203 3.08881 3.26445 3.34552 3.70542 3.82166 3.91504 4.04257 4.21159 4.31704 4.42552 4.61781 4.74874 4.84870 4.85590 4.95077 5.05687 5.28799 5.43188 5.55897 5.62425 5.78342 6.45214 6.52505 6.69632 6.80814 7.19402 7.72650 8.52885 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.007307 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.553872 B = 3831.277856 C = 4492.033970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.052 3.948 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.346 4.346 8 H 0.078 0.922 9 N -0.417 5.417 10 C 0.471 3.529 11 O -0.584 6.584 12 C 0.104 3.896 13 C -0.149 4.149 14 C 0.000 4.000 15 C -0.237 4.237 16 C 0.408 3.592 17 O -0.495 6.495 18 C 0.139 3.861 19 N -0.481 5.481 20 C 0.048 3.952 21 C -0.177 4.177 22 C -0.179 4.179 23 H 0.278 0.722 24 H 0.146 0.854 25 H 0.205 0.795 26 H 0.171 0.829 27 H 0.182 0.818 28 H 0.172 0.828 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.201 -0.891 -6.346 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.155 4.155 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.473 4.473 8 H 0.096 0.904 9 N -0.134 5.134 10 C 0.262 3.738 11 O -0.470 6.470 12 C -0.032 4.032 13 C -0.170 4.170 14 C -0.025 4.025 15 C -0.241 4.241 16 C 0.267 3.733 17 O -0.369 6.369 18 C -0.021 4.021 19 N -0.193 5.193 20 C -0.055 4.055 21 C -0.215 4.215 22 C -0.218 4.218 23 H 0.088 0.912 24 H 0.164 0.836 25 H 0.222 0.778 26 H 0.187 0.813 27 H 0.199 0.801 28 H 0.188 0.812 29 H 0.096 0.904 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.696 -1.187 -5.454 19.511 hybrid contribution -0.655 1.150 -0.309 1.359 sum 18.041 -0.036 -5.763 18.939 Atomic orbital electron populations 1.69707 1.07912 1.29198 1.46050 1.25971 0.95444 1.01913 0.92130 0.85568 0.78416 0.79684 0.77398 1.19420 1.22557 1.20273 1.18762 0.85364 0.95164 1.47997 0.90402 1.43185 1.07394 1.41633 1.21180 1.18652 0.87786 0.85595 0.81763 1.90574 1.54733 1.43874 1.57799 1.21456 0.92800 0.95286 0.93611 1.22223 0.99051 0.99764 0.95948 1.22302 0.89530 0.91228 0.99428 1.22498 0.99946 1.03742 0.97874 1.24663 0.83696 0.74847 0.90075 1.90549 1.56809 1.34627 1.54953 1.23673 0.91113 0.93152 0.94201 1.67995 1.03189 1.15813 1.32268 1.23046 0.95076 0.99594 0.87828 1.23242 1.00046 0.96310 1.01877 1.23115 1.01121 0.97709 0.99831 0.91236 0.83629 0.77786 0.81291 0.80142 0.81190 0.90407 0.85646 0.85974 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -56.00 13.95 21.72 0.30 -55.70 16 2 C 0.05 3.18 4.86 85.04 0.41 3.59 16 3 Si 0.96 52.13 24.79 68.60 1.70 53.83 16 4 H -0.27 -15.05 6.31 99.48 0.63 -14.42 16 5 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 6 H -0.28 -14.75 7.11 99.48 0.71 -14.04 16 7 C -0.35 -20.31 8.56 84.22 0.72 -19.59 16 8 H 0.08 4.82 7.18 -2.91 -0.02 4.80 16 9 N -0.42 -21.35 2.46 -616.17 -1.52 -22.87 16 10 C 0.47 23.61 5.96 86.86 0.52 24.13 16 11 O -0.58 -33.13 11.70 -3.95 -0.05 -33.18 16 12 C 0.10 3.97 6.67 41.91 0.28 4.25 16 13 C -0.15 -4.30 9.61 22.58 0.22 -4.09 16 14 C 0.00 0.00 9.94 22.77 0.23 0.23 16 15 C -0.24 -4.20 5.89 -19.99 -0.12 -4.32 16 16 C 0.41 4.88 11.48 70.19 0.81 5.69 16 17 O -0.50 -10.22 17.19 -2.91 -0.05 -10.27 16 18 C 0.14 3.39 10.76 85.20 0.92 4.30 16 19 N -0.48 -15.82 5.96 -183.70 -1.09 -16.91 16 20 C 0.05 1.97 5.12 44.99 0.23 2.20 16 21 C -0.18 -6.48 9.80 30.60 0.30 -6.18 16 22 C -0.18 -6.60 10.38 30.60 0.32 -6.29 16 23 H 0.28 16.34 8.30 -92.71 -0.77 15.57 16 24 H 0.15 4.36 7.64 -2.91 -0.02 4.34 16 25 H 0.21 1.03 8.06 -2.91 -0.02 1.00 16 26 H 0.17 0.12 8.06 -2.91 -0.02 0.10 16 27 H 0.18 3.76 7.65 -2.91 -0.02 3.74 16 28 H 0.17 6.24 5.29 -3.17 -0.02 6.22 16 29 H 0.08 3.31 6.59 -2.39 -0.02 3.30 16 30 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 31 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 32 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -80.77 278.80 5.19 -75.58 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.07 Total: 5.60 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 4.83 Total: 3.92 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -2.31 Total: -95.48 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.10 Total: -43.45 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 1.70 Total: 53.83 kcal Total: -80.77 5.19 -75.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616436.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.036 kcal (2) G-P(sol) polarization free energy of solvation -80.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds