Wall clock time and date at job start Mon Mar 30 2020 04:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38475 * 119.81518 * 59.72403 * 4 2 1 6 6 C 1.37831 * 120.18519 * 179.76655 * 5 4 2 7 7 C 1.40014 * 119.80823 * 0.52456 * 6 5 4 8 8 C 1.47046 * 120.17817 * 179.70381 * 7 6 5 9 9 N 1.30455 * 119.99871 * 0.02562 * 8 7 6 10 10 N 1.40104 * 119.99566 * 179.97438 * 9 8 7 11 11 C 1.34778 * 119.99902 * 180.02562 * 10 9 8 12 12 O 1.21916 * 119.99621 * 0.02562 * 11 10 9 13 13 C 1.41044 * 120.00105 * 180.02562 * 11 10 9 14 14 H 1.07997 * 120.00331 * 0.02562 * 13 11 10 15 15 C 1.40227 * 119.99985 * 180.02562 * 13 11 10 16 16 N 1.30586 * 120.00122 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00008 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46949 * 89.99905 * 17 15 13 19 19 H 1.48497 * 109.47335 * 209.99940 * 17 15 13 20 20 H 1.48498 * 109.47315 * 330.00071 * 17 15 13 21 21 C 1.40009 * 119.63955 * 359.73175 * 7 6 5 22 22 C 1.37829 * 119.81084 * 359.97438 * 21 7 6 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.08006 * 119.90748 * 359.97438 * 5 4 2 31 31 H 1.07994 * 120.09533 * 180.25518 * 6 5 4 32 32 H 1.07997 * 120.00229 * 180.02562 * 8 7 6 33 33 H 0.96997 * 120.00280 * 0.02562 * 10 9 8 34 34 H 0.97002 * 120.00072 * 179.97438 * 16 15 13 35 35 H 1.07993 * 120.09396 * 179.97438 * 21 7 6 36 36 H 1.08000 * 119.90313 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6907 -0.2373 -2.4863 6 6 2.1499 -0.8783 -3.6168 7 6 2.9548 -2.0172 -3.4927 8 6 3.4437 -2.7112 -4.6934 9 7 3.1281 -2.2657 -5.8782 10 7 3.5945 -2.9266 -7.0221 11 6 3.2689 -2.4661 -8.2463 12 8 2.5690 -1.4741 -8.3580 13 6 3.7379 -3.1318 -9.3979 14 1 4.3575 -4.0107 -9.2989 15 6 3.3996 -2.6523 -10.6715 16 7 2.6499 -1.5898 -10.7913 17 14 4.0201 -3.5344 -12.1968 18 1 3.0399 -4.5743 -12.6004 19 1 4.1866 -2.5558 -13.3012 20 1 5.3272 -4.1742 -11.9013 21 6 3.2911 -2.4920 -2.2193 22 6 2.8285 -1.8356 -1.0990 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.0655 0.6384 -2.5801 31 1 1.8859 -0.5056 -4.5955 32 1 4.0640 -3.5896 -4.5944 33 1 4.1516 -3.7156 -6.9332 34 1 2.4162 -1.2579 -11.6723 35 1 3.9111 -3.3701 -2.1150 36 1 3.0874 -2.2004 -0.1160 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012340135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:14 Heat of formation + Delta-G solvation = 8.572471 kcal Electronic energy + Delta-G solvation = -17894.854431 eV Core-core repulsion = 14958.175579 eV Total energy + Delta-G solvation = -2936.678852 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.38470 -37.62254 -35.94800 -34.64138 -32.65255 -31.31730 -30.72083 -28.88544 -27.25890 -26.51972 -23.81686 -22.63841 -21.06793 -19.92325 -19.57224 -17.64785 -16.42649 -16.04626 -15.56042 -14.96290 -14.79683 -14.10999 -13.77555 -13.67449 -13.64767 -13.26874 -13.10701 -12.68230 -12.51753 -12.21220 -12.12950 -11.44596 -11.42124 -11.23747 -11.20573 -10.79536 -10.73199 -10.64171 -10.61209 -10.38512 -9.49825 -9.07318 -8.73882 -8.67052 -7.78318 -7.24859 -6.40893 -4.95765 1.17269 1.64420 2.88918 3.05647 3.10172 3.14318 3.71096 4.08751 4.11742 4.44481 4.61876 4.74229 5.09252 5.09560 5.16008 5.23847 5.35130 5.49299 5.59513 5.62100 5.71027 5.74648 5.78639 5.86548 5.93926 6.11157 6.11459 6.21786 6.24877 6.46899 6.71520 6.79973 6.94028 7.19632 7.20040 7.81244 7.98043 8.66813 8.75532 9.27908 10.38359 10.62816 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.048978 B = 0.003203 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.553483 B = 8739.246845 C = 9125.043464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 C -0.145 4.145 4 C -0.085 4.085 5 C -0.116 4.116 6 C -0.089 4.089 7 C -0.022 4.022 8 C 0.015 3.985 9 N -0.186 5.186 10 N -0.589 5.589 11 C 0.558 3.442 12 O -0.553 6.553 13 C -0.537 4.537 14 H 0.071 0.929 15 C 0.088 3.912 16 N -0.745 5.745 17 Si 0.918 3.082 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.262 1.262 21 C -0.107 4.107 22 C -0.122 4.122 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.369 0.631 34 H 0.274 0.726 35 H 0.122 0.878 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -0.342 18.519 18.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.086 4.086 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.025 4.025 8 C -0.194 4.194 9 N 0.004 4.996 10 N -0.335 5.335 11 C 0.366 3.634 12 O -0.432 6.432 13 C -0.573 4.573 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.372 5.372 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.186 1.186 21 C -0.128 4.128 22 C -0.140 4.140 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.153 0.847 32 H 0.123 0.877 33 H 0.204 0.796 34 H 0.085 0.915 35 H 0.140 0.860 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.814 1.155 17.560 17.616 hybrid contribution 1.159 -1.652 -0.421 2.061 sum 0.344 -0.497 17.139 17.149 Atomic orbital electron populations 1.21865 0.94509 1.02003 1.01811 1.20098 0.95834 0.95956 0.95433 1.21863 1.01253 0.95257 1.01810 1.19909 0.98251 0.95994 0.94451 1.20898 1.00575 1.00190 0.91714 1.21547 0.95710 0.94314 0.99365 1.18522 0.97689 0.95170 0.91079 1.23980 1.04250 1.00493 0.90692 1.74722 1.11386 1.18867 0.94618 1.48106 1.52880 1.29550 1.02919 1.16900 0.81828 0.85404 0.79274 1.90705 1.40701 1.27565 1.84222 1.19820 1.33857 1.13908 0.89754 0.91066 1.25775 0.93311 0.94173 1.00331 1.70002 1.24761 1.17593 1.24880 0.86206 0.79934 0.79587 0.80144 1.19413 1.20116 1.18647 1.21151 1.00362 0.99952 0.91288 1.20819 0.99097 0.95952 0.98095 0.92546 0.92672 0.92306 0.90767 0.92316 0.92668 0.92546 0.86276 0.84681 0.87734 0.79554 0.91451 0.85978 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.00 37.16 0.33 -0.91 16 2 C -0.05 -0.51 3.09 -91.77 -0.28 -0.79 16 3 C -0.14 -1.25 9.01 37.16 0.33 -0.91 16 4 C -0.08 -1.00 4.80 -104.45 -0.50 -1.50 16 5 C -0.12 -1.57 8.68 -39.64 -0.34 -1.91 16 6 C -0.09 -1.46 9.59 -39.06 -0.37 -1.84 16 7 C -0.02 -0.36 5.88 -105.00 -0.62 -0.97 16 8 C 0.01 0.27 10.76 -14.57 -0.16 0.11 16 9 N -0.19 -4.27 10.19 32.16 0.33 -3.94 16 10 N -0.59 -14.30 6.26 28.99 0.18 -14.12 16 11 C 0.56 16.37 7.67 -15.20 -0.12 16.26 16 12 O -0.55 -18.60 15.21 4.99 0.08 -18.52 16 13 C -0.54 -14.93 9.28 -37.77 -0.35 -15.28 16 14 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 15 C 0.09 2.39 5.50 -17.33 -0.10 2.29 16 16 N -0.75 -21.90 11.71 55.56 0.65 -21.25 16 17 Si 0.92 19.40 29.56 -169.99 -5.02 14.38 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 C -0.11 -1.36 9.80 -39.07 -0.38 -1.75 16 22 C -0.12 -1.40 9.65 -39.65 -0.38 -1.78 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.53 7.36 -51.93 -0.38 0.15 16 26 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 27 H 0.06 0.53 7.39 -51.93 -0.38 0.14 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.12 1.43 7.07 -52.48 -0.37 1.06 16 31 H 0.14 2.52 7.55 -52.49 -0.40 2.13 16 32 H 0.11 1.56 8.03 -52.49 -0.42 1.14 16 33 H 0.37 7.52 8.61 -182.60 -1.57 5.95 16 34 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.06 7.94 -52.49 -0.42 0.64 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -34.51 315.52 -7.98 -42.49 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.01 Total: 5.19 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.94 Total: -8.99 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 1.16 Total: -39.31 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.08 Total: -18.52 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.51 -7.98 -42.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012340135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.065 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds