Wall clock time and date at job start Mon Mar 30 2020 04:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38475 * 119.81518 * 59.72403 * 4 2 1 6 6 C 1.37831 * 120.18519 * 179.76655 * 5 4 2 7 7 C 1.40014 * 119.80823 * 0.52456 * 6 5 4 8 8 C 1.47046 * 120.17817 * 179.70381 * 7 6 5 9 9 N 1.30455 * 119.99871 * 0.02562 * 8 7 6 10 10 N 1.40104 * 119.99566 * 179.97438 * 9 8 7 11 11 C 1.34778 * 119.99902 * 180.02562 * 10 9 8 12 12 O 1.21916 * 119.99621 * 0.02562 * 11 10 9 13 13 C 1.41044 * 120.00105 * 180.02562 * 11 10 9 14 14 H 1.07997 * 120.00331 * 0.02562 * 13 11 10 15 15 C 1.40227 * 119.99985 * 180.02562 * 13 11 10 16 16 N 1.30586 * 120.00122 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 120.00008 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46949 * 89.99905 * 17 15 13 19 19 H 1.48497 * 109.47335 * 209.99940 * 17 15 13 20 20 H 1.48498 * 109.47315 * 330.00071 * 17 15 13 21 21 C 1.40009 * 119.63955 * 359.73175 * 7 6 5 22 22 C 1.37829 * 119.81084 * 359.97438 * 21 7 6 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 29 29 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 30 30 H 1.08006 * 119.90748 * 359.97438 * 5 4 2 31 31 H 1.07994 * 120.09533 * 180.25518 * 6 5 4 32 32 H 1.07997 * 120.00229 * 180.02562 * 8 7 6 33 33 H 0.96997 * 120.00280 * 0.02562 * 10 9 8 34 34 H 0.97002 * 120.00072 * 179.97438 * 16 15 13 35 35 H 1.07993 * 120.09396 * 179.97438 * 21 7 6 36 36 H 1.08000 * 119.90313 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6907 -0.2373 -2.4863 6 6 2.1499 -0.8783 -3.6168 7 6 2.9548 -2.0172 -3.4927 8 6 3.4437 -2.7112 -4.6934 9 7 3.1281 -2.2657 -5.8782 10 7 3.5945 -2.9266 -7.0221 11 6 3.2689 -2.4661 -8.2463 12 8 2.5690 -1.4741 -8.3580 13 6 3.7379 -3.1318 -9.3979 14 1 4.3575 -4.0107 -9.2989 15 6 3.3996 -2.6523 -10.6715 16 7 2.6499 -1.5898 -10.7913 17 14 4.0201 -3.5344 -12.1968 18 1 3.0399 -4.5743 -12.6004 19 1 4.1866 -2.5558 -13.3012 20 1 5.3272 -4.1742 -11.9013 21 6 3.2911 -2.4920 -2.2193 22 6 2.8285 -1.8356 -1.0990 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.0655 0.6384 -2.5801 31 1 1.8859 -0.5056 -4.5955 32 1 4.0640 -3.5896 -4.5944 33 1 4.1516 -3.7156 -6.9332 34 1 2.4162 -1.2579 -11.6723 35 1 3.9111 -3.3701 -2.1150 36 1 3.0874 -2.2004 -0.1160 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012340135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:13 Heat of formation + Delta-G solvation = -14.563383 kcal Electronic energy + Delta-G solvation = -17895.857677 eV Core-core repulsion = 14958.175579 eV Total energy + Delta-G solvation = -2937.682098 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46158 -39.58219 -37.35739 -35.97960 -34.72711 -32.91766 -31.83026 -30.33097 -28.43804 -27.93246 -25.08119 -23.74612 -22.59784 -21.44413 -20.75104 -19.51229 -17.87567 -17.70518 -17.20306 -16.15020 -15.83740 -15.75249 -15.23734 -14.84306 -14.70661 -14.58252 -14.46167 -14.12510 -13.67576 -13.35985 -13.13782 -13.09113 -12.85188 -12.75426 -12.52530 -12.17694 -12.03430 -11.95055 -11.59931 -11.49029 -11.02306 -10.99803 -10.15377 -10.02317 -9.82084 -8.86650 -8.44643 -7.11690 -0.04601 0.56160 1.37021 1.37941 1.56559 1.57891 2.04416 2.33519 2.40462 2.98856 3.61452 3.72344 3.86257 3.91123 4.17350 4.19900 4.37663 4.47907 4.55396 4.60615 4.69374 4.85167 4.97205 5.02155 5.04210 5.08317 5.16432 5.22957 5.25908 5.39818 5.43367 5.57694 5.70416 5.76886 5.78818 6.00124 6.11342 6.65582 6.92092 7.42333 8.39283 8.55928 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.048978 B = 0.003203 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.553483 B = 8739.246845 C = 9125.043464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C -0.145 4.145 4 C -0.070 4.070 5 C -0.125 4.125 6 C -0.109 4.109 7 C -0.063 4.063 8 C 0.065 3.935 9 N -0.266 5.266 10 N -0.596 5.596 11 C 0.543 3.457 12 O -0.617 6.617 13 C -0.562 4.562 14 H 0.096 0.904 15 C 0.028 3.972 16 N -0.802 5.802 17 Si 1.012 2.988 18 H -0.258 1.258 19 H -0.269 1.269 20 H -0.244 1.244 21 C -0.087 4.087 22 C -0.119 4.119 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.097 0.903 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.141 0.859 33 H 0.384 0.616 34 H 0.282 0.718 35 H 0.156 0.844 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.565 -2.206 21.265 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.202 4.202 4 C -0.072 4.072 5 C -0.143 4.143 6 C -0.130 4.130 7 C -0.066 4.066 8 C -0.145 4.145 9 N -0.073 5.073 10 N -0.341 5.341 11 C 0.353 3.647 12 O -0.502 6.502 13 C -0.598 4.598 14 H 0.115 0.885 15 C -0.190 4.190 16 N -0.430 5.430 17 Si 0.830 3.170 18 H -0.182 1.182 19 H -0.194 1.194 20 H -0.167 1.167 21 C -0.107 4.107 22 C -0.137 4.137 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.116 0.884 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.113 0.887 32 H 0.158 0.842 33 H 0.222 0.778 34 H 0.092 0.908 35 H 0.174 0.826 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.534 -0.743 20.365 20.385 hybrid contribution 0.712 -1.025 -0.823 1.495 sum 1.246 -1.768 19.542 19.661 Atomic orbital electron populations 1.21872 0.94076 1.02022 1.02277 1.20203 0.96139 0.96142 0.94693 1.21870 1.01121 0.94977 1.02273 1.20341 0.96588 0.95668 0.94556 1.20994 1.00934 1.00518 0.91843 1.21413 0.97280 0.95644 0.98663 1.18668 0.99999 0.96090 0.91799 1.24723 1.00234 0.99584 0.89916 1.74839 1.15600 1.21354 0.95481 1.47323 1.53832 1.30296 1.02647 1.17325 0.81304 0.84889 0.81215 1.90637 1.43574 1.30200 1.85806 1.20391 1.34378 1.14771 0.90232 0.88549 1.27200 0.92720 0.94651 1.04451 1.70177 1.26506 1.19939 1.26403 0.84818 0.79901 0.78082 0.74246 1.18204 1.19385 1.16743 1.21511 0.99126 1.00283 0.89788 1.21309 0.97801 0.95112 0.99464 0.92752 0.90789 0.93390 0.88432 0.93406 0.90783 0.92753 0.85649 0.88688 0.84172 0.77777 0.90795 0.82629 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.00 71.98 0.65 -1.46 16 2 C -0.05 -0.80 3.09 -11.54 -0.04 -0.83 16 3 C -0.15 -2.11 9.01 71.98 0.65 -1.46 16 4 C -0.07 -1.47 4.80 -19.75 -0.09 -1.56 16 5 C -0.12 -3.38 8.68 22.23 0.19 -3.18 16 6 C -0.11 -3.76 9.59 22.60 0.22 -3.55 16 7 C -0.06 -1.98 5.88 -20.11 -0.12 -2.10 16 8 C 0.07 2.33 10.76 87.21 0.94 3.27 16 9 N -0.27 -12.85 10.19 -52.15 -0.53 -13.38 16 10 N -0.60 -30.33 6.26 -180.31 -1.13 -31.45 16 11 C 0.54 33.77 7.67 84.93 0.65 34.42 16 12 O -0.62 -44.66 15.21 -5.04 -0.08 -44.74 16 13 C -0.56 -32.21 9.28 23.44 0.22 -31.99 16 14 H 0.10 4.81 7.85 -2.91 -0.02 4.79 16 15 C 0.03 1.56 5.50 85.36 0.47 2.03 16 16 N -0.80 -49.43 11.71 21.87 0.26 -49.18 16 17 Si 1.01 39.94 29.56 68.60 2.03 41.97 16 18 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 20 H -0.24 -8.84 7.11 99.48 0.71 -8.14 16 21 C -0.09 -1.91 9.80 22.60 0.22 -1.68 16 22 C -0.12 -2.23 9.65 22.23 0.21 -2.01 16 23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.80 7.36 -2.39 -0.02 0.78 16 26 H 0.10 1.08 7.86 -2.39 -0.02 1.06 16 27 H 0.05 0.80 7.39 -2.39 -0.02 0.78 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.13 3.11 7.07 -2.91 -0.02 3.09 16 31 H 0.09 3.99 7.55 -2.91 -0.02 3.97 16 32 H 0.14 3.85 8.03 -2.91 -0.02 3.83 16 33 H 0.38 16.09 8.61 -213.32 -1.84 14.25 16 34 H 0.28 15.47 8.29 -92.71 -0.77 14.70 16 35 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.16 1.80 7.94 -2.91 -0.02 1.78 16 Total: -1.00 -82.84 315.52 3.97 -78.88 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.75 Total: 28.02 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 4.17 Total: -10.12 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -1.40 Total: -94.01 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.08 Total: -44.74 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -82.84 3.97 -78.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012340135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.316 kcal (2) G-P(sol) polarization free energy of solvation -82.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds